Wall clock time and date at job start Tue Mar 31 2020 14:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 H 1.08998 * 109.46978 * 304.16070 * 3 2 1 5 5 C 1.50693 * 109.47212 * 184.16233 * 3 2 1 6 6 H 1.08000 * 120.00136 * 240.00382 * 5 3 2 7 7 C 1.37886 * 120.00272 * 59.99728 * 5 3 2 8 8 N 1.31516 * 119.99371 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48488 * 109.47325 * 60.00201 * 9 7 5 11 11 H 1.48509 * 109.46585 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47113 * 299.99671 * 9 7 5 13 13 N 1.46898 * 109.47299 * 64.16187 * 3 2 1 14 14 C 1.46894 * 110.99981 * 205.24537 * 13 3 2 15 15 H 1.08997 * 110.83454 * 322.52500 * 14 13 3 16 16 C 1.54709 * 110.94341 * 86.23735 * 14 13 3 17 17 O 1.43767 * 102.79093 * 92.87251 * 16 14 13 18 18 C 1.36156 * 109.25276 * 27.67823 * 17 16 14 19 19 C 1.39286 * 129.87331 * 161.53872 * 18 17 16 20 20 C 1.37925 * 120.25525 * 179.42856 * 19 18 17 21 21 C 1.38362 * 120.34280 * 359.88942 * 20 19 18 22 22 Br 1.89099 * 120.12846 * 180.15302 * 21 20 19 23 23 C 1.38430 * 119.74203 * 0.42244 * 21 20 19 24 24 C 1.37741 * 119.97020 * 359.51710 * 23 21 20 25 25 H 1.09009 * 109.46756 * 294.85933 * 1 2 3 26 26 H 1.09001 * 109.47173 * 54.85255 * 1 2 3 27 27 H 1.08994 * 109.47679 * 174.85444 * 1 2 3 28 28 H 1.09004 * 109.46469 * 240.00318 * 2 1 3 29 29 H 1.08994 * 109.47207 * 120.00406 * 2 1 3 30 30 H 0.97002 * 119.99773 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99734 * 81.28634 * 13 3 2 32 32 H 1.09002 * 110.74629 * 334.55193 * 16 14 13 33 33 H 1.08999 * 110.90664 * 211.27501 * 16 14 13 34 34 H 1.08003 * 119.87103 * 359.41496 * 19 18 17 35 35 H 1.08000 * 119.82913 * 179.86186 * 20 19 18 36 36 H 1.08003 * 120.01314 * 179.76755 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6171 1.9774 -0.8504 5 6 3.5435 1.4437 -0.1031 6 1 4.1381 1.8920 0.6791 7 6 4.1601 0.8723 -1.1961 8 7 3.4360 0.3268 -2.1488 9 14 6.0237 0.8732 -1.3235 10 1 6.5994 0.1441 -0.1652 11 1 6.4339 0.2037 -2.5841 12 1 6.5192 2.2731 -1.3233 13 7 1.6342 2.1054 1.2465 14 6 1.5523 3.5609 1.0661 15 1 2.3475 3.9157 0.4106 16 6 0.1634 3.9736 0.5237 17 8 -0.5741 4.2618 1.7236 18 6 0.2902 4.6611 2.6969 19 6 0.0449 5.3560 3.8789 20 6 1.0816 5.6512 4.7394 21 6 2.3735 5.2583 4.4381 22 35 3.7896 5.6625 5.6243 23 6 2.6264 4.5731 3.2621 24 6 1.5918 4.2765 2.4025 25 1 -0.3633 0.4321 0.9325 26 1 -0.3633 0.5916 -0.8403 27 1 -0.3634 -1.0234 -0.0922 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8697 -0.0755 -2.9176 31 1 2.2601 1.8692 2.0019 32 1 -0.2969 3.1514 -0.0244 33 1 0.2393 4.8605 -0.1054 34 1 -0.9610 5.6649 4.1224 35 1 0.8839 6.1922 5.6530 36 1 3.6338 4.2676 3.0208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:46 Heat of formation + Delta-G solvation = -7.694139 kcal Electronic energy + Delta-G solvation = -19791.162361 eV Core-core repulsion = 16707.612184 eV Total energy + Delta-G solvation = -3083.550176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98768 -37.47552 -36.15571 -33.10333 -31.74812 -31.61339 -30.25288 -28.57656 -28.19289 -25.94688 -23.38009 -22.72237 -21.81444 -20.73312 -19.54232 -17.14790 -16.86167 -16.56581 -15.84644 -15.49274 -14.82977 -14.26772 -13.85995 -13.73251 -13.56296 -13.06397 -12.93591 -12.53347 -12.35596 -11.77007 -11.63182 -11.39985 -11.27526 -11.19622 -11.02305 -10.79417 -10.71508 -10.32125 -10.19635 -10.14154 -9.67740 -9.66626 -9.19016 -8.98242 -8.47159 -8.01911 -7.46495 -6.09850 -4.23439 1.16736 1.28159 1.66053 3.22402 3.28170 3.30675 3.42290 3.62260 4.31668 4.59327 4.80305 4.88065 5.14033 5.16377 5.21505 5.27918 5.57348 5.74270 5.84737 6.01148 6.09430 6.10162 6.20374 6.32141 6.43491 6.47491 6.52331 6.63774 6.97696 7.09924 7.22911 7.31216 7.46199 7.67352 7.94248 7.99705 8.16933 8.46826 8.86898 9.45049 10.90546 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.004405 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.841014 B = 6354.575197 C = 8000.950210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.105 3.895 15 H 0.078 0.922 16 C 0.059 3.941 17 O -0.296 6.296 18 C 0.140 3.860 19 C -0.145 4.145 20 C -0.057 4.057 21 C -0.127 4.127 22 Br -0.058 7.058 23 C -0.033 4.033 24 C -0.160 4.160 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.336 0.664 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 11.033 12.187 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.052 0.948 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.302 5.302 14 C -0.006 4.006 15 H 0.095 0.905 16 C -0.016 4.016 17 O -0.209 6.209 18 C 0.093 3.907 19 C -0.165 4.165 20 C -0.077 4.077 21 C -0.207 4.207 22 Br 0.027 6.973 23 C -0.054 4.054 24 C -0.163 4.163 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.080 10.935 12.299 16.955 hybrid contribution 1.934 -0.009 -0.569 2.016 sum -2.147 10.926 11.729 16.173 Atomic orbital electron populations 1.21714 0.98899 0.98528 1.00367 1.21495 0.92132 0.98921 1.01892 1.19254 0.92937 0.91330 0.85851 0.94829 1.21786 0.92463 1.38687 1.06057 0.92855 1.24913 0.98046 0.94766 0.95546 1.69857 1.35113 1.37572 1.09511 0.86713 0.85897 0.78268 0.77487 1.20200 1.21151 1.20346 1.61087 1.56089 1.02811 1.10215 1.21526 0.96709 0.91260 0.91055 0.90479 1.24026 0.91647 1.00956 0.84996 1.86821 1.32883 1.80353 1.20810 1.19712 0.88791 0.91670 0.90550 1.20148 1.00047 1.02628 0.93633 1.20705 0.90192 0.97962 0.98835 1.21414 0.92999 1.09082 0.97184 1.96655 1.45846 1.93860 1.60938 1.20260 0.99301 0.94809 0.91012 1.20969 0.93560 1.02289 0.99450 0.93383 0.94461 0.95501 0.88995 0.94955 0.92683 0.84603 0.86703 0.90750 0.84865 0.84627 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.73 37.16 0.36 -2.36 16 2 C -0.11 -2.42 5.45 -26.73 -0.15 -2.57 16 3 C 0.21 4.92 1.85 -68.87 -0.13 4.80 16 4 H 0.03 0.84 7.71 -51.93 -0.40 0.44 16 5 C -0.55 -14.03 8.31 -34.44 -0.29 -14.32 16 6 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -23.89 11.30 55.43 0.63 -23.26 16 9 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -13.30 5.59 -100.74 -0.56 -13.86 16 14 C 0.11 1.86 3.18 -67.50 -0.21 1.64 16 15 H 0.08 1.47 7.77 -51.93 -0.40 1.07 16 16 C 0.06 0.94 7.56 38.06 0.29 1.23 16 17 O -0.30 -4.84 11.10 -20.24 -0.22 -5.06 16 18 C 0.14 2.16 7.04 -38.96 -0.27 1.89 16 19 C -0.14 -1.85 10.06 -39.31 -0.40 -2.25 16 20 C -0.06 -0.68 9.76 -39.65 -0.39 -1.06 16 21 C -0.13 -1.69 6.23 -39.47 -0.25 -1.93 16 22 Br -0.06 -0.69 33.71 -68.01 -2.29 -2.98 16 23 C -0.03 -0.50 9.78 -39.69 -0.39 -0.89 16 24 C -0.16 -2.58 5.69 -104.10 -0.59 -3.17 16 25 H 0.05 0.92 7.88 -51.92 -0.41 0.51 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.34 6.80 8.19 -39.29 -0.32 6.48 16 32 H 0.12 1.89 8.06 -51.93 -0.42 1.47 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -26.22 320.88 -9.91 -36.13 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.76 Total: 6.01 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.50 Total: -17.24 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.06 Total: -37.13 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.22 Total: -5.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.22 -9.91 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.433 kcal (2) G-P(sol) polarization free energy of solvation -26.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds