Wall clock time and date at job start Tue Mar 31 2020 15:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47585 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47179 * 299.99751 * 3 2 1 6 6 H 1.48498 * 109.47374 * 59.99758 * 3 2 1 7 7 C 1.37880 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00601 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99379 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00077 * 179.97438 * 10 9 7 12 12 O 1.21355 * 119.99611 * 359.97438 * 11 10 9 13 13 C 1.49344 * 119.99993 * 179.97438 * 11 10 9 14 14 O 1.21386 * 120.00115 * 0.02562 * 13 11 10 15 15 N 1.34774 * 120.00226 * 180.02562 * 13 11 10 16 16 C 1.39791 * 120.00357 * 185.27877 * 15 13 11 17 17 C 1.39078 * 119.98539 * 213.31222 * 16 15 13 18 18 C 1.38145 * 120.24009 * 179.97438 * 17 16 15 19 19 C 1.38186 * 120.21703 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.01575 * 179.97438 * 19 18 17 21 21 C 1.39715 * 119.96876 * 359.97438 * 19 18 17 22 22 C 1.47784 * 120.11868 * 179.97438 * 21 19 18 23 23 N 1.34777 * 120.00149 * 179.97438 * 22 21 19 24 24 O 1.21563 * 120.00170 * 0.02562 * 22 21 19 25 25 C 1.38603 * 119.98929 * 33.53899 * 16 15 13 26 26 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47579 * 59.99294 * 9 7 2 28 28 H 1.09005 * 109.46546 * 299.99253 * 9 7 2 29 29 H 0.97006 * 120.00019 * 0.02562 * 10 9 7 30 30 H 0.97001 * 119.99867 * 5.27030 * 15 13 11 31 31 H 1.08001 * 119.87907 * 359.94760 * 17 16 15 32 32 H 1.08000 * 119.88827 * 179.97438 * 18 17 16 33 33 H 0.97003 * 119.99621 * 0.02562 * 23 22 21 34 34 H 0.96997 * 120.00404 * 179.72557 * 23 22 21 35 35 H 1.07996 * 120.10596 * 0.04993 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8834 0.0011 12 8 0.5608 -5.1051 0.0020 13 6 2.7244 -6.0184 0.0005 14 8 3.9179 -5.7966 0.0000 15 7 2.2753 -7.2891 0.0005 16 6 3.1789 -8.3500 0.1113 17 6 2.9222 -9.5525 -0.5385 18 6 3.8118 -10.6041 -0.4330 19 6 4.9629 -10.4684 0.3195 20 17 6.0769 -11.7935 0.4491 21 6 5.2296 -9.2643 0.9760 22 6 6.4594 -9.1158 1.7821 23 7 6.7146 -7.9530 2.4140 24 8 7.2412 -10.0420 1.8745 25 6 4.3280 -8.2045 0.8725 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8895 28 1 0.6242 -2.5566 0.8904 29 1 3.1568 -3.4353 0.0009 30 1 1.3249 -7.4676 -0.0763 31 1 2.0238 -9.6648 -1.1273 32 1 3.6066 -11.5355 -0.9396 33 1 6.0909 -7.2137 2.3399 34 1 7.5197 -7.8568 2.9463 35 1 4.5265 -7.2728 1.3813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321086697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:15 Heat of formation + Delta-G solvation = -104.751448 kcal Electronic energy + Delta-G solvation = -23807.226599 eV Core-core repulsion = 19830.355044 eV Total energy + Delta-G solvation = -3976.871555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.25606 -41.07658 -39.97394 -39.02482 -37.51503 -36.58134 -35.71600 -34.87009 -34.35104 -32.20244 -30.89634 -29.65381 -26.49926 -25.52859 -24.56102 -23.19701 -21.84358 -21.44547 -20.22565 -19.44194 -18.34882 -18.06443 -17.91777 -17.43250 -17.11152 -16.96333 -16.83098 -16.15853 -16.02147 -15.82167 -15.53223 -15.25349 -14.88018 -14.55495 -14.27244 -14.07673 -13.88392 -13.57948 -13.22783 -12.98082 -12.82070 -12.76288 -12.63730 -12.29792 -12.20870 -11.49036 -11.41892 -10.84701 -10.78118 -10.73024 -10.71863 -10.24333 -10.04318 -9.32977 -8.30907 -6.46320 -0.51342 -0.16906 0.40080 1.07884 1.23301 1.44872 1.46279 1.59036 1.69085 2.08152 2.35413 2.42435 2.58791 2.66284 3.05200 3.39387 3.57700 3.62050 3.98607 4.01960 4.20758 4.51181 4.61980 4.87282 4.98387 5.00807 5.04252 5.19559 5.26893 5.48350 5.54317 5.78845 5.81947 5.87830 6.28468 6.42980 6.58906 6.70374 7.00967 7.20099 7.26971 8.80754 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002429 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.474812 B =11523.381912 C =12510.948299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.263 3.737 10 N -0.671 5.671 11 C 0.494 3.506 12 O -0.556 6.556 13 C 0.524 3.476 14 O -0.511 6.511 15 N -0.631 5.631 16 C 0.131 3.869 17 C -0.084 4.084 18 C -0.090 4.090 19 C -0.013 4.013 20 Cl -0.044 7.044 21 C -0.129 4.129 22 C 0.555 3.445 23 N -0.833 5.833 24 O -0.554 6.554 25 C -0.082 4.082 26 H 0.270 0.730 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.414 0.586 30 H 0.436 0.564 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.411 0.589 34 H 0.414 0.586 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.273 -20.368 0.842 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.597 4.597 8 H 0.099 0.901 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.274 3.726 12 O -0.435 6.435 13 C 0.306 3.694 14 O -0.385 6.385 15 N -0.279 5.279 16 C 0.037 3.963 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.042 4.042 20 Cl -0.015 7.015 21 C -0.134 4.134 22 C 0.341 3.659 23 N -0.398 5.398 24 O -0.433 6.433 25 C -0.103 4.103 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.251 0.749 30 H 0.277 0.723 31 H 0.197 0.803 32 H 0.193 0.807 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.584 -20.942 0.829 22.649 hybrid contribution 0.113 1.413 0.251 1.439 sum 8.697 -19.530 1.080 21.406 Atomic orbital electron populations 1.70094 1.07934 1.28614 1.49698 1.25920 0.95752 1.03467 0.93818 0.85188 0.79060 0.77750 0.77732 1.18073 1.20468 1.20408 1.21598 0.94305 0.90550 1.53222 0.90132 1.18832 0.88322 0.83081 0.95684 1.46141 1.12469 1.04855 1.68678 1.20138 0.88388 0.84784 0.79333 1.90739 1.17089 1.84932 1.50774 1.20079 0.88227 0.84224 0.76863 1.90757 1.16206 1.84730 1.46846 1.43040 1.12086 1.02843 1.69927 1.17802 0.91866 0.88669 0.97940 1.21457 1.01446 0.90281 0.97200 1.21200 0.90914 1.01046 0.97740 1.21270 0.93758 0.89340 0.99810 1.98411 1.61617 1.44770 1.96677 1.19568 0.96856 0.94230 1.02708 1.18226 0.85368 0.83069 0.79287 1.43676 1.28600 1.14945 1.52551 1.90889 1.49141 1.40122 1.63175 1.21274 0.93394 0.98378 0.97301 0.92101 0.97640 0.97549 0.74933 0.72296 0.80333 0.80696 0.75766 0.75287 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.49 13.29 21.45 0.28 -52.20 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.98 40.62 29.54 68.60 2.03 42.65 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.56 -28.71 9.28 25.60 0.24 -28.48 16 8 H 0.08 3.83 7.60 -2.91 -0.02 3.81 16 9 C 0.26 13.13 5.43 85.63 0.46 13.59 16 10 N -0.67 -26.37 5.54 -468.25 -2.59 -28.96 16 11 C 0.49 17.33 7.89 87.24 0.69 18.02 16 12 O -0.56 -22.19 16.48 -3.26 -0.05 -22.25 16 13 C 0.52 14.08 7.62 87.24 0.66 14.75 16 14 O -0.51 -14.54 14.17 -3.36 -0.05 -14.59 16 15 N -0.63 -12.41 5.32 -304.92 -1.62 -14.03 16 16 C 0.13 2.33 6.27 38.16 0.24 2.57 16 17 C -0.08 -1.01 9.95 22.45 0.22 -0.79 16 18 C -0.09 -1.17 9.81 22.24 0.22 -0.95 16 19 C -0.01 -0.26 6.35 22.61 0.14 -0.11 16 20 Cl -0.04 -0.96 26.01 -2.72 -0.07 -1.03 16 21 C -0.13 -2.72 5.87 -20.09 -0.12 -2.84 16 22 C 0.56 12.69 8.04 86.77 0.70 13.39 16 23 N -0.83 -13.43 8.82 -175.64 -1.55 -14.98 16 24 O -0.55 -15.92 14.79 -3.91 -0.06 -15.98 16 25 C -0.08 -1.63 8.14 22.67 0.18 -1.44 16 26 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.41 14.62 7.79 -92.70 -0.72 13.90 16 30 H 0.44 7.10 8.30 -92.71 -0.77 6.33 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.41 5.51 6.86 -92.71 -0.64 4.87 16 34 H 0.41 5.36 8.93 -92.71 -0.83 4.53 16 35 H 0.15 2.87 4.77 -2.91 -0.01 2.86 16 Total: -1.00 -69.37 330.34 -1.31 -70.68 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -1.73 Total: 21.97 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 4.11 Total: 28.74 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -5.48 Total: -110.18 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.16 Total: -52.82 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -69.37 -1.31 -70.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321086697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.070 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds