Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38377 * 119.85595 * 2 1 4 4 C 1.37940 * 120.15266 * 179.69557 * 3 2 1 5 5 C 1.50705 * 120.05868 * 180.27492 * 4 3 2 6 6 C 1.39593 * 119.87608 * 0.55567 * 4 3 2 7 7 C 1.47846 * 120.14112 * 179.71738 * 6 4 3 8 8 O 1.21551 * 120.00460 * 269.72874 * 7 6 4 9 9 N 1.34774 * 119.99666 * 89.72779 * 7 6 4 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47289 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 C 1.39550 * 119.72118 * 359.44957 * 6 4 3 20 20 C 1.50698 * 120.08150 * 180.29578 * 19 6 4 21 21 C 1.38070 * 119.83974 * 0.27393 * 19 6 4 22 22 Br 1.89099 * 119.93873 * 180.02562 * 21 19 6 23 23 H 1.08991 * 109.47662 * 270.02060 * 1 2 3 24 24 H 1.09000 * 109.47449 * 30.02747 * 1 2 3 25 25 H 1.09008 * 109.46891 * 150.01774 * 1 2 3 26 26 H 1.07998 * 119.92128 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47134 * 270.27824 * 5 4 3 28 28 H 1.08998 * 109.47078 * 30.28372 * 5 4 3 29 29 H 1.09005 * 109.46493 * 150.28301 * 5 4 3 30 30 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 32 32 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 33 33 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47175 * 89.99643 * 20 19 6 35 35 H 1.08996 * 109.47282 * 209.99974 * 20 19 6 36 36 H 1.08997 * 109.47000 * 330.00025 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5752 1.2073 0.0063 5 6 4.3233 2.5155 0.0126 6 6 4.2768 0.0005 0.0010 7 6 5.7553 0.0014 0.0015 8 8 6.3634 0.0016 -1.0510 9 7 6.4288 0.0020 1.1689 10 6 7.8938 0.0034 1.1694 11 6 8.3957 0.0044 2.5904 12 1 7.6935 0.0037 3.4110 13 6 9.7511 0.0053 2.8428 14 7 10.6061 0.0058 1.8434 15 14 10.3732 0.0074 4.6042 16 1 9.2179 0.0071 5.5371 17 1 11.1987 -1.2045 4.8389 18 1 11.1975 1.2205 4.8366 19 6 3.5769 -1.2068 0.0010 20 6 4.3262 -2.5143 0.0020 21 6 2.1962 -1.2004 0.0004 22 35 1.2449 -2.8347 0.0011 23 1 -0.3634 0.0004 1.0275 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6522 2.1333 -0.0004 27 1 4.5040 2.8356 -1.0135 28 1 3.7309 3.2703 0.5297 29 1 5.2761 2.3867 0.5261 30 1 5.9435 0.0022 2.0088 31 1 8.2582 -0.8862 0.6556 32 1 8.2565 0.8938 0.6557 33 1 11.5597 0.0068 2.0210 34 1 4.5061 -2.8291 1.0299 35 1 3.7350 -3.2722 -0.5120 36 1 5.2793 -2.3872 -0.5112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348295585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -32.584864 kcal Electronic energy + Delta-G solvation = -19391.410625 eV Core-core repulsion = 16306.781106 eV Total energy + Delta-G solvation = -3084.629519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28119 -38.19836 -34.22985 -34.06716 -33.71900 -32.29004 -30.65730 -28.18061 -27.98354 -26.62077 -26.24060 -23.01147 -21.36904 -20.77409 -19.59608 -17.63036 -16.57494 -15.97164 -15.40327 -14.86302 -14.52151 -14.35624 -13.93380 -13.87802 -13.28289 -13.20877 -13.14593 -12.89398 -12.76059 -12.61489 -12.02871 -11.85032 -11.79004 -11.62759 -11.46288 -11.13012 -11.01587 -10.92567 -10.68827 -10.35955 -10.08907 -9.42900 -9.22750 -8.78076 -8.65670 -8.52293 -7.96949 -6.19813 -4.26829 0.95161 1.11990 1.53920 3.21147 3.22128 3.29167 3.31988 3.35956 3.99614 4.33240 4.57288 4.59436 4.74241 5.09930 5.16710 5.20266 5.32166 5.39666 5.41498 5.47120 5.62231 5.67514 5.70512 5.72954 5.86047 6.08044 6.17883 6.21515 6.26821 6.44632 6.70066 7.24343 7.33475 7.45645 7.62159 7.92301 8.53551 8.71906 8.98765 9.39846 10.90359 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.003527 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.931568 B = 7937.114020 C = 8576.598397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 C -0.128 4.128 4 C -0.027 4.027 5 C -0.125 4.125 6 C -0.119 4.119 7 C 0.550 3.450 8 O -0.545 6.545 9 N -0.701 5.701 10 C 0.248 3.752 11 C -0.543 4.543 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.013 4.013 20 C -0.133 4.133 21 C -0.107 4.107 22 Br -0.049 7.049 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.522 -1.565 -2.409 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.045 4.045 3 C -0.147 4.147 4 C -0.028 4.028 5 C -0.181 4.181 6 C -0.123 4.123 7 C 0.334 3.666 8 O -0.424 6.424 9 N -0.349 5.349 10 C 0.128 3.872 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.015 4.015 20 C -0.189 4.189 21 C -0.186 4.186 22 Br 0.036 6.964 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.151 0.849 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.225 0.775 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.187 -2.189 -3.188 22.522 hybrid contribution 0.459 0.374 1.305 1.433 sum -21.728 -1.815 -1.883 21.885 Atomic orbital electron populations 1.20995 0.90286 1.03641 1.03113 1.19812 0.96444 0.91391 0.96804 1.20767 0.93009 0.97233 1.03662 1.20041 0.93516 0.94593 0.94685 1.20939 1.00678 0.93174 1.03334 1.19955 0.94554 0.92651 1.05136 1.18063 0.85806 0.77659 0.85077 1.90778 1.69183 1.50947 1.31467 1.46543 1.10381 1.71285 1.06666 1.19179 0.72467 0.97931 0.97614 1.21240 0.92200 1.53227 0.91435 0.91801 1.24939 0.96559 0.94638 0.97773 1.69983 1.02474 1.48900 1.30869 0.86368 0.78924 0.77785 0.83900 1.19611 1.20771 1.20772 1.19739 0.91419 0.95437 0.94947 1.21091 1.00898 0.93167 1.03751 1.21423 0.93502 0.91257 1.12390 1.96592 1.74309 1.27754 1.97707 0.90382 0.90972 0.90515 0.84850 0.90204 0.90862 0.90421 0.77480 0.95319 0.95335 0.92464 0.89755 0.90260 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.54 36.00 0.34 -0.71 16 2 C -0.04 -0.49 5.89 -104.51 -0.62 -1.11 16 3 C -0.13 -1.49 9.34 -39.64 -0.37 -1.86 16 4 C -0.03 -0.39 5.91 -104.22 -0.62 -1.00 16 5 C -0.12 -1.63 9.62 36.01 0.35 -1.29 16 6 C -0.12 -1.98 5.63 -104.97 -0.59 -2.57 16 7 C 0.55 11.25 4.18 -12.33 -0.05 11.20 16 8 O -0.54 -13.32 17.10 5.32 0.09 -13.23 16 9 N -0.70 -14.74 5.54 -62.42 -0.35 -15.09 16 10 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 11 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.01 -0.20 5.92 -104.20 -0.62 -0.81 16 20 C -0.13 -1.94 9.16 36.00 0.33 -1.61 16 21 C -0.11 -1.40 6.21 -39.58 -0.25 -1.65 16 22 Br -0.05 -0.55 29.84 -68.01 -2.03 -2.58 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.08 0.65 6.63 -51.92 -0.34 0.30 16 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.08 1.19 7.08 -51.93 -0.37 0.83 16 30 H 0.39 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.02 6.64 -51.93 -0.34 0.68 16 36 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -30.88 324.76 -8.88 -39.76 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.67 Total: 3.72 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.53 Total: -8.11 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.39 Total: -40.04 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.03 Total: -2.58 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.88 -8.88 -39.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348295585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds