Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38377 * 119.85595 * 2 1 4 4 C 1.37940 * 120.15266 * 179.69557 * 3 2 1 5 5 C 1.50705 * 120.05868 * 180.27492 * 4 3 2 6 6 C 1.39593 * 119.87608 * 0.55567 * 4 3 2 7 7 C 1.47846 * 120.14112 * 179.71738 * 6 4 3 8 8 O 1.21551 * 120.00460 * 269.72874 * 7 6 4 9 9 N 1.34774 * 119.99666 * 89.72779 * 7 6 4 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47289 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99399 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 C 1.39550 * 119.72118 * 359.44957 * 6 4 3 20 20 C 1.50698 * 120.08150 * 180.29578 * 19 6 4 21 21 C 1.38070 * 119.83974 * 0.27393 * 19 6 4 22 22 Br 1.89099 * 119.93873 * 180.02562 * 21 19 6 23 23 H 1.08991 * 109.47662 * 270.02060 * 1 2 3 24 24 H 1.09000 * 109.47449 * 30.02747 * 1 2 3 25 25 H 1.09008 * 109.46891 * 150.01774 * 1 2 3 26 26 H 1.07998 * 119.92128 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47134 * 270.27824 * 5 4 3 28 28 H 1.08998 * 109.47078 * 30.28372 * 5 4 3 29 29 H 1.09005 * 109.46493 * 150.28301 * 5 4 3 30 30 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 32 32 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 33 33 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47175 * 89.99643 * 20 19 6 35 35 H 1.08996 * 109.47282 * 209.99974 * 20 19 6 36 36 H 1.08997 * 109.47000 * 330.00025 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2001 0.0000 4 6 3.5752 1.2073 0.0063 5 6 4.3233 2.5155 0.0126 6 6 4.2768 0.0005 0.0010 7 6 5.7553 0.0014 0.0015 8 8 6.3634 0.0016 -1.0510 9 7 6.4288 0.0020 1.1689 10 6 7.8938 0.0034 1.1694 11 6 8.3957 0.0044 2.5904 12 1 7.6935 0.0037 3.4110 13 6 9.7511 0.0053 2.8428 14 7 10.6061 0.0058 1.8434 15 14 10.3732 0.0074 4.6042 16 1 9.2179 0.0071 5.5371 17 1 11.1987 -1.2045 4.8389 18 1 11.1975 1.2205 4.8366 19 6 3.5769 -1.2068 0.0010 20 6 4.3262 -2.5143 0.0020 21 6 2.1962 -1.2004 0.0004 22 35 1.2449 -2.8347 0.0011 23 1 -0.3634 0.0004 1.0275 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6522 2.1333 -0.0004 27 1 4.5040 2.8356 -1.0135 28 1 3.7309 3.2703 0.5297 29 1 5.2761 2.3867 0.5261 30 1 5.9435 0.0022 2.0088 31 1 8.2582 -0.8862 0.6556 32 1 8.2565 0.8938 0.6557 33 1 11.5597 0.0068 2.0210 34 1 4.5061 -2.8291 1.0299 35 1 3.7350 -3.2722 -0.5120 36 1 5.2793 -2.3872 -0.5112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348295585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -51.676921 kcal Electronic energy + Delta-G solvation = -19392.238518 eV Core-core repulsion = 16306.781106 eV Total energy + Delta-G solvation = -3085.457413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 325.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.56756 -39.69872 -36.20279 -35.13156 -34.83978 -34.24372 -31.62852 -29.84525 -29.01329 -28.04685 -27.32644 -24.88101 -22.78704 -21.85895 -21.11633 -19.25596 -17.85432 -17.71599 -17.20200 -16.45303 -15.72018 -15.63835 -15.44793 -15.22798 -14.49089 -14.30513 -14.15659 -14.14651 -14.03920 -13.91119 -13.83033 -13.36969 -12.96123 -12.85629 -12.76825 -12.56985 -12.55515 -12.24970 -12.14765 -11.67761 -11.48489 -11.11856 -10.85526 -10.84022 -9.94565 -9.72142 -9.55649 -8.30819 -6.47435 -0.11405 0.05832 0.54653 1.42695 1.43403 1.56792 1.57053 2.21833 2.35657 2.52915 3.04340 3.53613 3.62056 3.67275 3.87191 4.15319 4.32795 4.40129 4.43801 4.52563 4.62156 4.64501 4.69909 4.82573 4.98005 5.02757 5.07013 5.13336 5.19505 5.23348 5.29668 5.37393 5.41758 5.60551 5.71356 5.80963 6.61147 6.76053 7.18230 7.33365 8.81528 Molecular weight = 325.04amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.003527 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.931568 B = 7937.114020 C = 8576.598397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.117 4.117 4 C -0.033 4.033 5 C -0.124 4.124 6 C -0.148 4.148 7 C 0.559 3.441 8 O -0.594 6.594 9 N -0.694 5.694 10 C 0.267 3.733 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.025 4.025 20 C -0.129 4.129 21 C -0.116 4.116 22 Br -0.029 7.029 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.173 0.827 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.406 0.594 31 H -0.010 1.010 32 H -0.008 1.008 33 H 0.269 0.731 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.792 -0.944 -0.611 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.135 4.135 4 C -0.034 4.034 5 C -0.180 4.180 6 C -0.152 4.152 7 C 0.346 3.654 8 O -0.476 6.476 9 N -0.342 5.342 10 C 0.145 3.855 11 C -0.592 4.592 12 H 0.100 0.900 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.806 3.194 16 H -0.178 1.178 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.028 4.028 20 C -0.185 4.185 21 C -0.196 4.196 22 Br 0.057 6.943 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.191 0.809 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.241 0.759 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.507 -1.572 -1.373 25.593 hybrid contribution 1.365 0.156 0.669 1.528 sum -24.142 -1.416 -0.704 24.194 Atomic orbital electron populations 1.21107 0.87487 1.04923 1.04445 1.20301 0.98360 0.90619 0.94143 1.21148 0.91678 0.98960 1.01713 1.20229 0.94854 0.93698 0.94650 1.20962 0.99770 0.93929 1.03356 1.19633 0.91519 0.94744 1.09290 1.18651 0.87704 0.75371 0.83723 1.90732 1.70939 1.52808 1.33086 1.46265 1.08486 1.71593 1.07900 1.18627 0.75323 0.94432 0.97160 1.21585 0.92948 1.53037 0.91673 0.90041 1.26017 0.96734 0.93758 1.02744 1.70137 1.03002 1.49868 1.33757 0.85131 0.78580 0.77772 0.77875 1.17798 1.20420 1.20292 1.19751 0.92587 0.94643 0.95814 1.21046 0.99608 0.94018 1.03854 1.21597 0.92779 0.93029 1.12154 1.96606 1.73408 1.26667 1.97643 0.88785 0.88585 0.90438 0.80929 0.90339 0.87171 0.93558 0.75892 0.99161 0.98971 0.92180 0.89232 0.88620 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.54 71.23 0.68 -0.84 16 2 C -0.03 -0.64 5.89 -19.79 -0.12 -0.75 16 3 C -0.12 -2.30 9.34 22.23 0.21 -2.09 16 4 C -0.03 -0.90 5.91 -19.61 -0.12 -1.02 16 5 C -0.12 -3.14 9.62 71.24 0.69 -2.46 16 6 C -0.15 -5.01 5.63 -20.09 -0.11 -5.13 16 7 C 0.56 24.28 4.18 86.79 0.36 24.64 16 8 O -0.59 -31.31 17.10 -3.88 -0.07 -31.38 16 9 N -0.69 -30.87 5.54 -469.69 -2.60 -33.47 16 10 C 0.27 14.80 5.43 85.63 0.46 15.26 16 11 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 12 H 0.08 4.07 7.60 -2.91 -0.02 4.04 16 13 C 0.01 0.40 5.46 84.65 0.46 0.87 16 14 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 15 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 16 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 C -0.03 -0.77 5.92 -19.59 -0.12 -0.88 16 20 C -0.13 -3.88 9.16 71.24 0.65 -3.23 16 21 C -0.12 -2.83 6.21 22.27 0.14 -2.69 16 22 Br -0.03 -0.58 29.84 -20.37 -0.61 -1.19 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 25 H 0.08 0.99 6.63 -2.38 -0.02 0.97 16 26 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.11 1.92 8.09 -2.39 -0.02 1.90 16 29 H 0.05 1.46 7.08 -2.38 -0.02 1.44 16 30 H 0.41 15.66 8.31 -92.71 -0.77 14.89 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.47 6.64 -2.39 -0.02 2.45 16 36 H 0.05 1.72 7.08 -2.39 -0.02 1.70 16 Total: -1.00 -71.17 324.76 2.80 -68.37 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.33 Total: 17.29 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.43 Total: -8.37 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.32 Total: -89.03 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.07 Total: -31.38 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.61 Total: -1.19 kcal Total: -71.17 2.80 -68.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348295585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.694 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds