Wall clock time and date at job start Tue Mar 31 2020 15:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47022 * 269.99933 * 3 2 1 5 5 H 1.48504 * 109.47166 * 29.99843 * 3 2 1 6 6 H 1.48501 * 109.47109 * 149.99749 * 3 2 1 7 7 C 1.37873 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00244 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47084 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47097 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54325 * 68.37540 * 11 10 9 13 13 O 1.42102 * 110.54692 * 291.62443 * 11 10 9 14 14 O 1.52205 * 104.45217 * 180.02562 * 11 10 9 15 15 C 1.35836 * 114.00023 * 74.99963 * 14 11 10 16 16 C 1.38990 * 120.52246 * 270.32520 * 15 14 11 17 17 C 1.38608 * 118.45982 * 180.28076 * 16 15 14 18 18 C 1.38342 * 119.41564 * 359.44009 * 17 16 15 19 19 N 1.31712 * 121.01743 * 0.25593 * 18 17 16 20 20 C 1.32631 * 121.67729 * 0.02562 * 19 18 17 21 21 C 1.48350 * 119.76697 * 179.97438 * 20 19 18 22 22 N 1.34085 * 126.68362 * 180.02562 * 21 20 19 23 23 N 1.28980 * 107.26546 * 180.02562 * 22 21 20 24 24 N 1.28732 * 108.95826 * 359.97438 * 23 22 21 25 25 H 0.96991 * 125.33711 * 180.02562 * 24 23 22 26 26 N 1.28875 * 109.32111 * 359.73533 * 24 23 22 27 27 H 0.97000 * 120.00378 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47327 * 59.99870 * 9 7 2 29 29 H 1.09004 * 109.47058 * 299.99763 * 9 7 2 30 30 H 1.09001 * 109.47277 * 60.00104 * 10 9 7 31 31 H 1.08996 * 109.47273 * 299.99892 * 10 9 7 32 32 H 1.08005 * 120.77018 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.29422 * 179.71924 * 17 16 15 34 34 H 1.08001 * 119.48952 * 180.27868 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 16 5.8355 -2.6364 0.0009 12 8 6.3342 -2.1461 1.2379 13 8 6.3342 -2.1460 -1.2360 14 8 6.2154 -4.1103 0.0001 15 6 6.0422 -4.7249 -1.1988 16 6 4.8301 -5.3272 -1.5148 17 6 4.7022 -5.9472 -2.7478 18 6 5.7708 -5.9392 -3.6264 19 7 6.9079 -5.3563 -3.3069 20 6 7.0779 -4.7557 -2.1367 21 6 8.3770 -4.1128 -1.8207 22 7 8.6989 -3.4717 -0.6879 23 7 9.9152 -3.0613 -0.8126 24 7 10.3607 -3.4179 -1.9666 25 1 11.2498 -3.2321 -2.3066 26 7 9.4419 -4.0657 -2.5967 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.6586 -3.1501 -0.8893 31 1 3.6579 -3.1505 0.8907 32 1 4.0083 -5.3160 -0.8140 33 1 3.7751 -6.4284 -3.0221 34 1 5.6709 -6.4181 -4.5893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:17 Heat of formation + Delta-G solvation = 36.903229 kcal Electronic energy + Delta-G solvation = -25672.170783 eV Core-core repulsion = 21735.778293 eV Total energy + Delta-G solvation = -3936.392489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.66007 -42.51503 -40.12610 -38.34979 -37.24630 -35.99696 -35.64724 -34.90690 -33.62462 -33.23219 -31.70280 -28.07823 -26.61008 -26.02535 -25.00795 -23.53751 -23.24904 -21.83771 -20.49056 -19.78651 -19.20431 -18.75413 -18.57611 -18.31027 -18.12585 -17.17299 -16.62129 -16.35531 -15.81495 -15.40129 -15.32766 -15.19605 -14.91744 -14.75981 -14.24388 -13.89208 -13.82274 -13.60336 -13.38823 -13.30131 -13.28199 -13.12037 -13.03083 -12.59770 -12.40773 -12.30580 -12.18985 -12.01249 -11.72090 -11.36205 -11.03811 -10.87793 -10.83914 -10.09290 -8.36251 -6.41310 -1.24685 -0.60124 -0.11399 -0.02480 0.97121 1.03560 1.24752 1.30574 1.34153 1.43177 2.16242 2.29236 2.46805 2.57219 2.73462 2.86927 2.97765 3.32355 3.57088 3.67845 3.73656 3.80949 3.84326 3.99351 4.20234 4.37320 4.49965 4.58259 4.78966 4.89451 4.98406 5.01254 5.39778 5.44845 5.49536 6.16679 6.50838 6.64116 6.91262 7.23067 8.78668 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.004563 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.359343 B = 6135.153306 C = 7122.656948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.021 3.979 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.524 4.524 8 H 0.061 0.939 9 C -0.014 4.014 10 C -0.609 4.609 11 S 2.592 3.408 12 O -0.959 6.959 13 O -0.977 6.977 14 O -0.649 6.649 15 C 0.030 3.970 16 C -0.090 4.090 17 C -0.110 4.110 18 C 0.123 3.877 19 N -0.456 5.456 20 C 0.199 3.801 21 C 0.206 3.794 22 N -0.300 5.300 23 N -0.050 5.050 24 N -0.192 5.192 25 H 0.499 0.501 26 N -0.256 5.256 27 H 0.270 0.730 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.190 0.810 33 H 0.211 0.789 34 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.101 -15.370 -9.228 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.053 4.053 10 C -0.739 4.739 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.975 6.975 14 O -0.606 6.606 15 C -0.017 4.017 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.036 4.036 19 N -0.167 5.167 20 C 0.059 3.941 21 C -0.075 4.075 22 N -0.173 5.173 23 N -0.045 5.045 24 N -0.045 5.045 25 H 0.359 0.641 26 N -0.109 5.109 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.207 0.793 33 H 0.227 0.773 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 16.883 -14.756 -9.185 24.231 hybrid contribution -0.781 1.041 0.596 1.431 sum 16.102 -13.716 -8.589 22.829 Atomic orbital electron populations 1.69973 1.07598 1.28341 1.51503 1.25725 0.95533 1.02502 0.94068 0.86193 0.79999 0.80235 0.79896 1.18501 1.19756 1.17828 1.21110 0.89543 0.94259 1.51336 0.92113 1.19356 0.97824 0.90174 0.97960 1.30601 1.22016 1.07640 1.13643 1.05543 0.78495 0.73045 0.73789 1.93532 1.79135 1.76916 1.46153 1.93535 1.78544 1.78937 1.46533 1.85745 1.87276 1.47655 1.39879 1.19274 0.97141 1.03052 0.82192 1.22508 0.94873 0.94286 1.00047 1.22960 1.02769 0.96440 0.90848 1.23968 0.85824 0.92128 1.01678 1.67676 1.27299 1.07824 1.13930 1.17970 0.87899 0.97062 0.91177 1.23199 0.94864 1.00859 0.88593 1.75991 1.05520 1.13448 1.22368 1.78845 1.04932 1.16649 1.04108 1.47858 1.15951 1.31904 1.08748 0.64099 1.74981 0.98046 1.14947 1.22945 0.92056 0.95174 0.94960 0.82890 0.82791 0.79326 0.77254 0.75933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 13.96 21.45 0.30 -55.58 16 2 C 0.02 1.19 5.47 84.65 0.46 1.65 16 3 Si 0.91 43.41 27.47 68.60 1.88 45.29 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 7 C -0.52 -28.60 9.66 25.60 0.25 -28.35 16 8 H 0.06 3.45 7.99 -2.91 -0.02 3.43 16 9 C -0.01 -0.67 4.05 29.85 0.12 -0.55 16 10 C -0.61 -21.94 5.44 71.98 0.39 -21.55 16 11 S 2.59 100.17 4.42 -56.49 -0.25 99.92 16 12 O -0.96 -43.37 18.09 -118.57 -2.15 -45.51 16 13 O -0.98 -40.79 14.72 -118.57 -1.75 -42.53 16 14 O -0.65 -21.71 8.72 -60.80 -0.53 -22.24 16 15 C 0.03 0.86 4.81 22.82 0.11 0.97 16 16 C -0.09 -1.64 8.60 22.54 0.19 -1.45 16 17 C -0.11 -1.18 10.10 22.38 0.23 -0.96 16 18 C 0.12 1.62 11.17 84.74 0.95 2.56 16 19 N -0.46 -10.79 10.29 -184.50 -1.90 -12.68 16 20 C 0.20 5.98 6.20 42.08 0.26 6.24 16 21 C 0.21 6.83 7.14 137.32 0.98 7.81 16 22 N -0.30 -10.93 9.58 -52.22 -0.50 -11.43 16 23 N -0.05 -1.50 13.47 37.02 0.50 -1.00 16 24 N -0.19 -4.07 7.90 37.02 0.29 -3.78 16 25 H 0.50 4.39 8.96 -347.54 -3.12 1.27 16 26 N -0.26 -6.96 12.38 -52.17 -0.65 -7.60 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 29 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 30 H 0.15 4.55 6.59 -2.39 -0.02 4.54 16 31 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 32 H 0.19 2.42 7.52 -2.91 -0.02 2.40 16 33 H 0.21 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -87.47 312.79 -2.78 -90.26 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -1.98 Total: 0.51 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.94 Total: -33.61 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -1.95 Total: -92.09 kcal Atomic # 8 Polarization: -105.86 SS G_CDS: -4.42 Total: -110.28 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 16 Polarization: 100.17 SS G_CDS: -0.25 Total: 99.92 kcal Total: -87.47 -2.78 -90.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.160 kcal (2) G-P(sol) polarization free energy of solvation -87.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds