Wall clock time and date at job start Tue Mar 31 2020 14:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47156 * 269.99771 * 3 2 1 5 5 H 1.48497 * 109.46987 * 30.00239 * 3 2 1 6 6 H 1.48498 * 109.46811 * 149.99974 * 3 2 1 7 7 C 1.38949 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99828 * 197.98539 * 7 2 1 9 9 N 1.37097 * 120.00579 * 17.99074 * 7 2 1 10 10 C 1.34777 * 119.99741 * 44.48336 * 9 7 2 11 11 O 1.21294 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00119 * 180.02562 * 10 9 7 13 13 S 1.81399 * 109.47302 * 179.97438 * 12 10 9 14 14 C 1.81404 * 102.99710 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46829 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.98946 * 269.72392 * 15 14 13 17 17 C 1.38223 * 120.02252 * 179.76612 * 16 15 14 18 18 C 1.38238 * 120.01223 * 0.51494 * 17 16 15 19 19 C 1.38326 * 119.98776 * 359.73824 * 18 17 16 20 20 Cl 1.73604 * 120.01577 * 180.02562 * 19 18 17 21 21 C 1.38187 * 119.99456 * 90.00396 * 15 14 13 22 22 C 1.46499 * 119.99963 * 224.48595 * 9 7 2 23 23 C 1.52996 * 117.49865 * 3.27045 * 22 9 7 24 24 C 1.52994 * 117.49836 * 294.61141 * 22 9 7 25 25 H 0.97004 * 120.00051 * 354.96544 * 1 2 3 26 26 H 1.09001 * 109.46878 * 59.99585 * 12 10 9 27 27 H 1.09005 * 109.47119 * 300.00145 * 12 10 9 28 28 H 1.08994 * 109.47086 * 300.00045 * 14 13 12 29 29 H 1.09002 * 109.47005 * 60.00456 * 14 13 12 30 30 H 1.07999 * 119.99588 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.99774 * 180.25116 * 17 16 15 32 32 H 1.07999 * 120.00443 * 179.76693 * 18 17 16 33 33 H 1.08008 * 120.00487 * 359.95345 * 21 15 14 34 34 H 1.09004 * 115.54485 * 148.94032 * 22 9 7 35 35 H 1.08992 * 117.50103 * 0.02562 * 23 22 9 36 36 H 1.09007 * 117.49377 * 145.02084 * 23 22 9 37 37 H 1.09004 * 117.49814 * 214.98590 * 24 22 9 38 38 H 1.08995 * 117.50137 * 359.97090 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0492 -1.2264 0.2883 9 7 1.3736 -2.3615 -0.3677 10 6 0.5766 -2.3775 -1.4545 11 8 0.4217 -1.3674 -2.1079 12 6 -0.1221 -3.6503 -1.8579 13 16 -1.1131 -3.3503 -3.3474 14 6 -1.8631 -4.9699 -3.6715 15 6 -2.7313 -4.8845 -4.9004 16 6 -4.0683 -4.5534 -4.7803 17 6 -4.8641 -4.4701 -5.9074 18 6 -4.3260 -4.7283 -7.1544 19 6 -2.9897 -5.0647 -7.2745 20 17 -2.3130 -5.3884 -8.8402 21 6 -2.1923 -5.1427 -6.1463 22 6 1.5611 -3.5816 0.4212 23 6 2.4159 -3.4806 1.6860 24 6 2.9616 -4.1970 0.4483 25 1 -0.4850 0.8368 0.0737 26 1 -0.7738 -3.9792 -1.0485 27 1 0.6194 -4.4223 -2.0638 28 1 -1.0778 -5.7083 -3.8325 29 1 -2.4710 -5.2664 -2.8166 30 1 -4.4902 -4.3556 -3.8060 31 1 -5.9074 -4.2075 -5.8136 32 1 -4.9488 -4.6668 -8.0346 33 1 -1.1487 -5.4051 -6.2395 34 1 0.7111 -4.2637 0.4412 35 1 2.8384 -2.5063 1.9315 36 1 2.1285 -4.0966 2.5382 37 1 3.0330 -5.2840 0.4866 38 1 3.7433 -3.6944 -0.1212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063127421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:49 Heat of formation + Delta-G solvation = 23.118960 kcal Electronic energy + Delta-G solvation = -21789.270201 eV Core-core repulsion = 18364.236738 eV Total energy + Delta-G solvation = -3425.033463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.50812 -38.56751 -36.64954 -36.09587 -32.96601 -32.85329 -31.13625 -30.90019 -29.09161 -27.19173 -24.67213 -22.85540 -21.84527 -21.73721 -21.24818 -19.49430 -17.28390 -16.51016 -16.13575 -15.82136 -15.73932 -15.53066 -14.88843 -14.52275 -14.17208 -14.04342 -13.91613 -13.69735 -13.42984 -13.00699 -12.85323 -12.51954 -12.03369 -11.77764 -11.67367 -11.54224 -11.44372 -11.12613 -10.97060 -10.95442 -10.87401 -10.58820 -10.19905 -10.02458 -9.82192 -9.62096 -9.00921 -8.76143 -8.73652 -8.13746 -7.21393 -7.07159 -6.13817 -3.91084 0.85423 1.05093 1.94726 2.08633 2.97467 3.30191 3.37149 3.41257 3.55846 4.01477 4.24390 4.44809 4.60013 4.69275 4.79854 4.85970 4.99051 5.09059 5.21596 5.24871 5.43902 5.49575 5.52272 5.58278 5.66120 5.72624 5.72956 5.83013 6.02116 6.04450 6.14109 6.16595 6.32220 6.38569 6.60150 6.67536 6.88131 7.58939 8.22296 8.99484 9.08522 9.59470 10.20190 10.94936 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.002781 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.637769 B =10066.800006 C =10644.537084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.350 4.350 8 H 0.079 0.921 9 N -0.423 5.423 10 C 0.497 3.503 11 O -0.512 6.512 12 C -0.115 4.115 13 S -0.166 6.166 14 C -0.080 4.080 15 C -0.047 4.047 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.034 4.034 20 Cl -0.074 7.074 21 C -0.095 4.095 22 C 0.072 3.928 23 C -0.172 4.172 24 C -0.207 4.207 25 H 0.265 0.735 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -14.009 -7.963 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.097 0.903 9 N -0.145 5.145 10 C 0.283 3.717 11 O -0.388 6.388 12 C -0.267 4.267 13 S 0.062 5.938 14 C -0.228 4.228 15 C -0.048 4.048 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.132 4.132 19 C -0.060 4.060 20 Cl -0.045 7.045 21 C -0.115 4.115 22 C -0.034 4.034 23 C -0.209 4.209 24 C -0.246 4.246 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.356 -12.409 -9.037 17.023 hybrid contribution 0.584 -0.510 0.824 1.132 sum -6.772 -12.919 -8.213 16.740 Atomic orbital electron populations 1.69819 1.06538 1.27594 1.42361 1.25266 0.94868 0.99463 0.94151 0.86190 0.79236 0.82063 0.78424 1.20211 1.21232 1.19879 1.18846 0.94446 0.83636 1.50731 0.90339 1.42636 1.44049 1.07074 1.20759 1.18932 0.83364 0.87438 0.81983 1.90580 1.61891 1.33792 1.52559 1.23678 1.01279 1.03244 0.98457 1.87818 1.59440 1.11251 1.35249 1.22452 1.01161 1.01033 0.98140 1.19169 0.93753 0.98884 0.93035 1.21206 0.93073 0.97992 0.99535 1.21092 1.00282 0.99542 0.91586 1.21051 0.93316 1.00254 0.98610 1.20853 0.94090 1.04660 0.86433 1.98368 1.85486 1.94015 1.26646 1.20946 1.00141 1.00049 0.90392 1.21707 0.92555 0.91581 0.97552 1.23071 1.04297 1.02534 0.91012 1.23332 0.99678 0.98469 1.03157 0.92442 0.89169 0.89116 0.89374 0.89204 0.84977 0.84908 0.85047 0.84667 0.88206 0.87373 0.89762 0.89790 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.55 11.74 55.50 0.65 -23.90 16 2 C 0.07 2.06 4.39 -17.47 -0.08 1.99 16 3 Si 0.91 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.35 -9.45 7.91 -14.93 -0.12 -9.57 16 8 H 0.08 2.05 7.27 -52.48 -0.38 1.67 16 9 N -0.42 -10.45 2.83 -107.73 -0.31 -10.75 16 10 C 0.50 12.54 6.98 -10.99 -0.08 12.47 16 11 O -0.51 -15.19 13.64 5.55 0.08 -15.11 16 12 C -0.11 -2.18 5.04 36.01 0.18 -2.00 16 13 S -0.17 -3.05 20.86 -107.50 -2.24 -5.30 16 14 C -0.08 -1.01 6.07 36.01 0.22 -0.79 16 15 C -0.05 -0.57 5.14 -104.63 -0.54 -1.11 16 16 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 17 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 18 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 19 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 20 Cl -0.07 -0.79 28.96 -51.86 -1.50 -2.29 16 21 C -0.09 -1.13 9.49 -39.55 -0.38 -1.51 16 22 C 0.07 1.40 5.87 -67.94 -0.40 1.00 16 23 C -0.17 -2.99 9.80 -26.70 -0.26 -3.26 16 24 C -0.21 -3.41 10.36 -26.70 -0.28 -3.69 16 25 H 0.27 7.55 8.32 -40.82 -0.34 7.21 16 26 H 0.09 1.56 7.57 -51.92 -0.39 1.17 16 27 H 0.09 1.49 8.11 -51.92 -0.42 1.07 16 28 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.09 1.00 8.08 -51.92 -0.42 0.58 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 35 H 0.11 2.11 6.73 -51.93 -0.35 1.76 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -33.06 353.67 -11.00 -44.07 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.84 Total: 2.53 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.14 Total: -11.50 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.35 Total: -34.65 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.08 Total: -15.11 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.24 Total: -5.30 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.06 -11.00 -44.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063127421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.188 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds