Wall clock time and date at job start Tue Mar 31 2020 14:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47156 * 269.99771 * 3 2 1 5 5 H 1.48497 * 109.46987 * 30.00239 * 3 2 1 6 6 H 1.48498 * 109.46811 * 149.99974 * 3 2 1 7 7 C 1.38949 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99828 * 197.98539 * 7 2 1 9 9 N 1.37097 * 120.00579 * 17.99074 * 7 2 1 10 10 C 1.34777 * 119.99741 * 44.48336 * 9 7 2 11 11 O 1.21294 * 120.00008 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00119 * 180.02562 * 10 9 7 13 13 S 1.81399 * 109.47302 * 179.97438 * 12 10 9 14 14 C 1.81404 * 102.99710 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46829 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.98946 * 269.72392 * 15 14 13 17 17 C 1.38223 * 120.02252 * 179.76612 * 16 15 14 18 18 C 1.38238 * 120.01223 * 0.51494 * 17 16 15 19 19 C 1.38326 * 119.98776 * 359.73824 * 18 17 16 20 20 Cl 1.73604 * 120.01577 * 180.02562 * 19 18 17 21 21 C 1.38187 * 119.99456 * 90.00396 * 15 14 13 22 22 C 1.46499 * 119.99963 * 224.48595 * 9 7 2 23 23 C 1.52996 * 117.49865 * 3.27045 * 22 9 7 24 24 C 1.52994 * 117.49836 * 294.61141 * 22 9 7 25 25 H 0.97004 * 120.00051 * 354.96544 * 1 2 3 26 26 H 1.09001 * 109.46878 * 59.99585 * 12 10 9 27 27 H 1.09005 * 109.47119 * 300.00145 * 12 10 9 28 28 H 1.08994 * 109.47086 * 300.00045 * 14 13 12 29 29 H 1.09002 * 109.47005 * 60.00456 * 14 13 12 30 30 H 1.07999 * 119.99588 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.99774 * 180.25116 * 17 16 15 32 32 H 1.07999 * 120.00443 * 179.76693 * 18 17 16 33 33 H 1.08008 * 120.00487 * 359.95345 * 21 15 14 34 34 H 1.09004 * 115.54485 * 148.94032 * 22 9 7 35 35 H 1.08992 * 117.50103 * 0.02562 * 23 22 9 36 36 H 1.09007 * 117.49377 * 145.02084 * 23 22 9 37 37 H 1.09004 * 117.49814 * 214.98590 * 24 22 9 38 38 H 1.08995 * 117.50137 * 359.97090 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0492 -1.2264 0.2883 9 7 1.3736 -2.3615 -0.3677 10 6 0.5766 -2.3775 -1.4545 11 8 0.4217 -1.3674 -2.1079 12 6 -0.1221 -3.6503 -1.8579 13 16 -1.1131 -3.3503 -3.3474 14 6 -1.8631 -4.9699 -3.6715 15 6 -2.7313 -4.8845 -4.9004 16 6 -4.0683 -4.5534 -4.7803 17 6 -4.8641 -4.4701 -5.9074 18 6 -4.3260 -4.7283 -7.1544 19 6 -2.9897 -5.0647 -7.2745 20 17 -2.3130 -5.3884 -8.8402 21 6 -2.1923 -5.1427 -6.1463 22 6 1.5611 -3.5816 0.4212 23 6 2.4159 -3.4806 1.6860 24 6 2.9616 -4.1970 0.4483 25 1 -0.4850 0.8368 0.0737 26 1 -0.7738 -3.9792 -1.0485 27 1 0.6194 -4.4223 -2.0638 28 1 -1.0778 -5.7083 -3.8325 29 1 -2.4710 -5.2664 -2.8166 30 1 -4.4902 -4.3556 -3.8060 31 1 -5.9074 -4.2075 -5.8136 32 1 -4.9488 -4.6668 -8.0346 33 1 -1.1487 -5.4051 -6.2395 34 1 0.7111 -4.2637 0.4412 35 1 2.8384 -2.5063 1.9315 36 1 2.1285 -4.0966 2.5382 37 1 3.0330 -5.2840 0.4866 38 1 3.7433 -3.6944 -0.1212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063127421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:49 Heat of formation + Delta-G solvation = 5.612003 kcal Electronic energy + Delta-G solvation = -21790.029360 eV Core-core repulsion = 18364.236738 eV Total energy + Delta-G solvation = -3425.792622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39002 -40.29303 -37.76695 -37.47683 -34.82211 -33.81561 -33.00373 -31.71709 -30.75897 -28.14417 -26.61734 -23.67108 -23.20717 -22.88264 -22.60191 -21.31253 -18.53210 -18.00273 -17.77470 -17.08172 -16.80863 -16.67328 -16.42822 -16.08195 -15.84075 -15.37066 -14.99578 -14.75305 -14.59146 -14.27022 -14.08421 -13.81770 -13.61523 -13.40044 -12.94499 -12.82600 -12.64896 -12.51338 -12.36671 -12.31914 -12.22365 -12.06277 -11.81630 -11.66759 -11.24656 -10.88325 -10.75661 -10.05831 -9.86334 -9.62893 -9.01262 -8.59232 -8.21614 -6.00867 -0.08938 0.21877 0.88660 1.13330 1.34762 1.43920 1.48080 1.73181 2.19778 2.37350 2.71816 3.05403 3.12105 3.33662 3.56134 3.80787 3.96174 4.04312 4.11012 4.19071 4.24013 4.27657 4.28418 4.37893 4.44009 4.50178 4.56961 4.74464 4.90212 4.92522 5.03597 5.21120 5.27778 5.34272 5.46099 5.48053 5.49742 5.80614 6.17939 6.99980 7.15191 7.64901 8.29851 8.86471 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.002781 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.637769 B =10066.800006 C =10644.537084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.022 3.978 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.356 4.356 8 H 0.079 0.921 9 N -0.440 5.440 10 C 0.479 3.521 11 O -0.571 6.571 12 C -0.092 4.092 13 S -0.242 6.242 14 C -0.052 4.052 15 C -0.065 4.065 16 C -0.105 4.105 17 C -0.105 4.105 18 C -0.111 4.111 19 C -0.047 4.047 20 Cl -0.073 7.073 21 C -0.105 4.105 22 C 0.042 3.958 23 C -0.170 4.170 24 C -0.179 4.179 25 H 0.259 0.741 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.456 -16.420 -7.645 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.184 4.184 3 Si 0.793 3.207 4 H -0.220 1.220 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.097 0.903 9 N -0.161 5.161 10 C 0.267 3.733 11 O -0.451 6.451 12 C -0.244 4.244 13 S -0.014 6.014 14 C -0.199 4.199 15 C -0.067 4.067 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.074 4.074 20 Cl -0.044 7.044 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.207 4.207 24 C -0.218 4.218 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.696 -14.857 -8.669 18.844 hybrid contribution 0.694 0.119 0.649 0.958 sum -7.002 -14.738 -8.019 18.181 Atomic orbital electron populations 1.69927 1.07925 1.27637 1.44829 1.26051 0.95533 1.02582 0.94264 0.85344 0.79157 0.78726 0.77448 1.22040 1.20552 1.17611 1.19075 0.94670 0.85047 1.49516 0.90336 1.42891 1.43610 1.08150 1.21446 1.19892 0.83142 0.88839 0.81450 1.90535 1.63831 1.36404 1.54366 1.23378 1.01718 1.00300 0.98959 1.88058 1.60510 1.17345 1.35457 1.22421 1.01469 0.96948 0.99103 1.19226 0.94310 1.00320 0.92853 1.21465 0.92902 0.97508 1.00634 1.21443 1.01539 0.98426 0.90905 1.21380 0.92995 0.98989 0.99674 1.21019 0.94755 1.05218 0.86391 1.98366 1.85582 1.94038 1.26432 1.21048 1.00379 1.00418 0.90760 1.22056 0.95171 0.90429 0.98645 1.23126 1.03459 1.02132 0.92023 1.23343 0.96640 1.00545 1.01237 0.93146 0.87371 0.86277 0.87579 0.87308 0.84000 0.82088 0.82972 0.84677 0.85466 0.90141 0.86333 0.85525 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.21 11.74 21.66 0.25 -52.95 16 2 C 0.02 1.28 4.39 84.93 0.37 1.66 16 3 Si 0.97 46.28 29.59 68.60 2.03 48.31 16 4 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.36 -19.56 7.91 84.04 0.66 -18.90 16 8 H 0.08 4.18 7.27 -2.91 -0.02 4.16 16 9 N -0.44 -21.77 2.83 -613.14 -1.74 -23.51 16 10 C 0.48 24.51 6.98 87.66 0.61 25.12 16 11 O -0.57 -35.23 13.64 -3.07 -0.04 -35.27 16 12 C -0.09 -3.42 5.04 71.24 0.36 -3.06 16 13 S -0.24 -8.90 20.86 -56.49 -1.18 -10.08 16 14 C -0.05 -1.22 6.07 71.24 0.43 -0.79 16 15 C -0.07 -1.50 5.14 -19.87 -0.10 -1.60 16 16 C -0.11 -2.12 9.70 22.27 0.22 -1.90 16 17 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 18 C -0.11 -1.98 9.83 22.29 0.22 -1.76 16 19 C -0.05 -1.01 6.32 22.32 0.14 -0.87 16 20 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 21 C -0.11 -2.41 9.49 22.29 0.21 -2.20 16 22 C 0.04 1.54 5.87 44.99 0.26 1.80 16 23 C -0.17 -5.55 9.80 30.62 0.30 -5.25 16 24 C -0.18 -5.34 10.36 30.61 0.32 -5.02 16 25 H 0.26 15.40 8.32 -92.71 -0.77 14.63 16 26 H 0.11 3.55 7.57 -2.39 -0.02 3.53 16 27 H 0.12 3.64 8.11 -2.39 -0.02 3.62 16 28 H 0.11 2.08 8.08 -2.39 -0.02 2.06 16 29 H 0.11 2.12 8.08 -2.39 -0.02 2.10 16 30 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.13 3.91 6.96 -2.39 -0.02 3.90 16 35 H 0.08 3.09 6.73 -2.39 -0.02 3.08 16 36 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.13 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -76.07 353.67 4.55 -71.52 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.07 Total: 17.86 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.23 Total: -14.32 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.48 Total: -76.46 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.04 Total: -35.27 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.18 Total: -10.08 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -76.07 4.55 -71.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063127421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.132 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds