Wall clock time and date at job start Tue Mar 31 2020 14:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48497 * 109.47482 * 273.60780 * 3 2 1 5 5 H 1.48505 * 109.47398 * 33.60955 * 3 2 1 6 6 H 1.48503 * 109.47151 * 153.60453 * 3 2 1 7 7 C 1.38944 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00362 * 341.27419 * 7 2 1 9 9 N 1.37096 * 120.00321 * 161.27246 * 7 2 1 10 10 C 1.34772 * 119.99960 * 320.26403 * 9 7 2 11 11 O 1.21291 * 120.00038 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00190 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.46813 * 179.97438 * 12 10 9 14 14 S 1.81405 * 109.46632 * 180.02562 * 13 12 10 15 15 C 1.76205 * 102.99785 * 180.02562 * 14 13 12 16 16 C 1.38943 * 120.08470 * 359.97438 * 15 14 13 17 17 C 1.38098 * 119.93371 * 179.97438 * 16 15 14 18 18 C 1.38315 * 120.09504 * 0.02562 * 17 16 15 19 19 C 1.38286 * 120.17013 * 359.97438 * 18 17 16 20 20 C 1.38184 * 120.06745 * 0.02562 * 19 18 17 21 21 Cl 1.73604 * 120.05020 * 180.02562 * 20 19 18 22 22 C 1.46501 * 120.00208 * 140.26380 * 9 7 2 23 23 C 1.53005 * 117.49833 * 2.39653 * 22 9 7 24 24 C 1.53002 * 117.49668 * 293.73790 * 22 9 7 25 25 H 0.97001 * 120.00420 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46937 * 60.00189 * 12 10 9 27 27 H 1.08996 * 109.46533 * 299.99894 * 12 10 9 28 28 H 1.08993 * 109.47467 * 59.99774 * 13 12 10 29 29 H 1.08996 * 109.47577 * 299.99368 * 13 12 10 30 30 H 1.07997 * 120.03032 * 359.95939 * 16 15 14 31 31 H 1.07996 * 119.95124 * 180.02562 * 17 16 15 32 32 H 1.07995 * 119.91032 * 180.02562 * 18 17 16 33 33 H 1.07993 * 119.96429 * 179.72850 * 19 18 17 34 34 H 1.09000 * 115.55474 * 148.06716 * 22 9 7 35 35 H 1.08999 * 117.49941 * 359.97438 * 23 22 9 36 36 H 1.09004 * 117.49911 * 145.02439 * 23 22 9 37 37 H 1.09006 * 117.49808 * 214.97680 * 24 22 9 38 38 H 1.09001 * 117.49768 * 359.97330 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4193 2.0905 -1.3972 5 1 1.4858 2.6295 0.7750 6 1 3.5817 1.4193 0.6224 7 6 2.0088 -1.2033 0.0005 8 1 1.5117 -2.1138 0.3012 9 7 3.3253 -1.2349 -0.3806 10 6 3.7444 -0.4849 -1.4190 11 8 2.9567 0.2176 -2.0166 12 6 5.1915 -0.5201 -1.8385 13 6 5.3992 0.4138 -3.0324 14 16 7.1409 0.3709 -3.5377 15 6 7.1861 1.4880 -4.8996 16 6 6.0264 2.1344 -5.3090 17 6 6.0655 3.0097 -6.3764 18 6 7.2572 3.2433 -7.0385 19 6 8.4140 2.6022 -6.6344 20 6 8.3827 1.7250 -5.5672 21 17 9.8353 0.9210 -5.0599 22 6 4.2766 -2.0839 0.3408 23 6 3.7289 -2.9537 1.4741 24 6 4.5818 -1.7241 1.7963 25 1 -0.4851 0.8400 -0.0004 26 1 5.4631 -1.5370 -2.1216 27 1 5.8183 -0.1943 -1.0084 28 1 5.1274 1.4308 -2.7498 29 1 4.7725 0.0876 -3.8623 30 1 5.0952 1.9522 -4.7932 31 1 5.1643 3.5125 -6.6947 32 1 7.2844 3.9287 -7.8726 33 1 9.3417 2.7838 -7.1565 34 1 5.0909 -2.4918 -0.2581 35 1 2.6608 -2.8940 1.6832 36 1 4.1830 -3.9337 1.6210 37 1 5.5968 -1.8957 2.1549 38 1 4.0751 -0.8555 2.2168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:17 Heat of formation + Delta-G solvation = 23.345243 kcal Electronic energy + Delta-G solvation = -22287.285209 eV Core-core repulsion = 18862.261558 eV Total energy + Delta-G solvation = -3425.023651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.29596 -39.26818 -36.63359 -36.56468 -33.25996 -32.49807 -31.54114 -31.24656 -30.84615 -26.08829 -23.78512 -23.16705 -22.52680 -21.91033 -21.33489 -19.24218 -17.99994 -17.35354 -16.58682 -16.29541 -15.72630 -15.63203 -14.96508 -14.91190 -14.41330 -14.09377 -13.96166 -13.77642 -13.54045 -13.14938 -12.93048 -12.50871 -11.97831 -11.96766 -11.75842 -11.74135 -11.52785 -11.33883 -11.19687 -11.07150 -10.77098 -10.38788 -10.13961 -10.07184 -10.03732 -9.96057 -9.66302 -9.05700 -8.63083 -8.54592 -7.58149 -7.51305 -6.24027 -4.01225 0.84504 0.96359 1.34503 1.94473 2.38048 3.20612 3.32983 3.42792 3.61408 3.72814 4.26291 4.43169 4.51175 4.59176 4.70500 4.94558 5.01140 5.06719 5.09829 5.12917 5.22736 5.39296 5.42308 5.53914 5.55569 5.66489 5.74323 5.82168 5.93614 5.95805 6.05520 6.12439 6.16513 6.25568 6.48294 6.61704 6.80085 7.77379 7.87192 8.68741 8.80877 9.35940 9.70387 10.79783 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.003513 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.080543 B = 7968.360729 C = 9179.982262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.090 3.910 3 Si 0.919 3.081 4 H -0.251 1.251 5 H -0.313 1.313 6 H -0.283 1.283 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.430 5.430 10 C 0.449 3.551 11 O -0.543 6.543 12 C -0.118 4.118 13 C -0.092 4.092 14 S -0.093 6.093 15 C -0.074 4.074 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.120 4.120 19 C -0.095 4.095 20 C -0.026 4.026 21 Cl -0.057 7.057 22 C 0.060 3.940 23 C -0.171 4.171 24 C -0.198 4.198 25 H 0.273 0.727 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.350 2.748 -9.411 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.119 4.119 3 Si 0.751 3.249 4 H -0.177 1.177 5 H -0.244 1.244 6 H -0.209 1.209 7 C -0.476 4.476 8 H 0.116 0.884 9 N -0.150 5.150 10 C 0.238 3.762 11 O -0.427 6.427 12 C -0.160 4.160 13 C -0.241 4.241 14 S 0.153 5.847 15 C -0.189 4.189 16 C -0.147 4.147 17 C -0.114 4.114 18 C -0.141 4.141 19 C -0.115 4.115 20 C -0.060 4.060 21 Cl -0.028 7.028 22 C -0.045 4.045 23 C -0.209 4.209 24 C -0.237 4.237 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.741 2.351 -9.056 20.056 hybrid contribution -0.517 1.442 -0.372 1.577 sum 17.224 3.793 -9.428 19.999 Atomic orbital electron populations 1.69732 1.06870 1.28295 1.45077 1.25314 0.94975 0.99589 0.92057 0.86255 0.78728 0.81860 0.78028 1.17735 1.24368 1.20892 1.18807 0.83171 0.96108 1.49481 0.88423 1.43115 1.07861 1.38810 1.25177 1.19950 0.89072 0.85247 0.81929 1.90528 1.55464 1.41663 1.55004 1.21291 0.97261 1.00325 0.97077 1.23540 0.93566 1.04734 1.02245 1.85571 1.14076 1.52266 1.32740 1.21762 0.95039 1.01731 1.00319 1.21372 0.97157 0.97661 0.98463 1.21208 0.98447 0.96941 0.94772 1.21126 0.92051 1.00362 1.00551 1.20968 0.99541 0.95686 0.95330 1.20401 0.86999 0.99949 0.98606 1.98371 1.35469 1.78574 1.90428 1.21850 0.95690 0.98982 0.88001 1.23142 1.01643 0.93937 1.02175 1.23289 1.00018 1.00313 1.00050 0.91745 0.88944 0.89196 0.88768 0.88316 0.84348 0.84992 0.84968 0.84668 0.87010 0.87086 0.89337 0.89392 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.96 55.50 0.77 -25.31 16 2 C 0.09 2.60 4.88 -17.47 -0.09 2.51 16 3 Si 0.92 24.17 24.59 -169.99 -4.18 19.99 16 4 H -0.25 -6.80 6.09 56.52 0.34 -6.46 16 5 H -0.31 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.35 -9.57 8.77 -14.94 -0.13 -9.70 16 8 H 0.10 2.79 6.95 -52.48 -0.36 2.42 16 9 N -0.43 -9.98 2.56 -107.72 -0.28 -10.25 16 10 C 0.45 10.18 5.88 -10.98 -0.06 10.11 16 11 O -0.54 -14.26 10.87 5.55 0.06 -14.20 16 12 C -0.12 -1.98 4.34 -27.88 -0.12 -2.10 16 13 C -0.09 -1.46 3.62 37.16 0.13 -1.32 16 14 S -0.09 -1.30 20.83 -107.50 -2.24 -3.54 16 15 C -0.07 -0.99 6.11 -39.02 -0.24 -1.23 16 16 C -0.12 -1.55 9.36 -39.37 -0.37 -1.92 16 17 C -0.09 -0.97 10.04 -39.60 -0.40 -1.36 16 18 C -0.12 -1.08 10.04 -39.54 -0.40 -1.48 16 19 C -0.10 -0.94 9.82 -39.58 -0.39 -1.32 16 20 C -0.03 -0.32 6.34 -39.30 -0.25 -0.56 16 21 Cl -0.06 -0.67 27.84 -51.86 -1.44 -2.11 16 22 C 0.06 1.09 5.85 -67.93 -0.40 0.70 16 23 C -0.17 -2.86 9.80 -26.69 -0.26 -3.12 16 24 C -0.20 -3.28 10.37 -26.69 -0.28 -3.56 16 25 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 27 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 28 H 0.09 1.58 7.71 -51.93 -0.40 1.18 16 29 H 0.10 1.59 7.71 -51.93 -0.40 1.19 16 30 H 0.14 1.82 5.88 -52.49 -0.31 1.52 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.11 1.67 6.99 -51.93 -0.36 1.30 16 35 H 0.11 2.13 6.49 -51.93 -0.34 1.79 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -32.18 340.48 -10.13 -42.31 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.72 Total: 2.34 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.24 Total: -14.36 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.50 Total: -35.56 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.06 Total: -14.20 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.18 Total: 19.99 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.24 Total: -3.54 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.44 Total: -2.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.18 -10.13 -42.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.652 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds