Wall clock time and date at job start Tue Mar 31 2020 14:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47397 * 62.86829 * 3 2 1 5 5 N 1.46499 * 109.47400 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99321 * 269.99489 * 5 4 3 7 7 C 1.50695 * 109.46919 * 269.99431 * 6 5 4 8 8 H 1.07997 * 120.00437 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99555 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00412 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99845 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46826 * 90.00421 * 11 9 7 13 13 H 1.48492 * 109.47024 * 210.00384 * 11 9 7 14 14 H 1.48501 * 109.47059 * 330.00851 * 11 9 7 15 15 C 1.34771 * 120.00225 * 89.99331 * 5 4 3 16 16 O 1.21283 * 119.99625 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00300 * 0.02562 * 15 5 4 18 18 S 1.81396 * 109.47078 * 180.02562 * 17 15 5 19 19 C 1.81406 * 102.99751 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47019 * 179.97438 * 19 18 17 21 21 C 1.33635 * 122.75319 * 269.73321 * 20 19 18 22 22 S 1.76192 * 107.92524 * 179.97438 * 21 20 19 23 23 C 1.70976 * 90.28427 * 0.27803 * 22 21 20 24 24 N 1.29027 * 110.16712 * 359.83656 * 23 22 21 25 25 H 1.08994 * 109.47670 * 302.85893 * 3 2 1 26 26 H 1.09001 * 109.46646 * 182.86221 * 3 2 1 27 27 H 1.08994 * 109.47475 * 59.98945 * 4 3 2 28 28 H 1.09001 * 109.46727 * 299.99343 * 4 3 2 29 29 H 1.08998 * 109.47542 * 29.99975 * 6 5 4 30 30 H 1.09004 * 109.46599 * 150.00022 * 6 5 4 31 31 H 0.96997 * 120.00440 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47274 * 59.99800 * 17 15 5 33 33 H 1.09005 * 109.46975 * 299.99910 * 17 15 5 34 34 H 1.08994 * 109.47085 * 59.99990 * 19 18 17 35 35 H 1.08997 * 109.46976 * 299.99569 * 19 18 17 36 36 H 1.08001 * 126.03202 * 0.03585 * 21 20 19 37 37 H 1.08001 * 124.91761 * 179.84059 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6569 -1.2837 5 7 4.5833 -0.6557 -1.2840 6 6 5.3146 0.4740 -1.8631 7 6 5.5658 0.2130 -3.3259 8 1 5.2153 -0.7025 -3.7790 9 6 6.2421 1.1436 -4.0859 10 7 6.6684 2.2587 -3.5342 11 14 6.5528 0.8204 -5.8994 12 1 5.4218 1.3565 -6.6985 13 1 7.8121 1.4899 -6.3128 14 1 6.6713 -0.6420 -6.1284 15 6 5.2582 -1.6937 -0.7516 16 8 6.4710 -1.6924 -0.7515 17 6 4.5059 -2.8560 -0.1565 18 16 5.6859 -4.0814 0.4731 19 6 4.6089 -5.3804 1.1389 20 6 5.4540 -6.4906 1.7085 21 6 5.8554 -7.5387 0.9831 22 16 6.8127 -8.5863 2.0273 23 6 6.5712 -7.5150 3.3377 24 7 5.8523 -6.5106 2.9646 25 1 2.9716 -0.5567 0.8632 26 1 2.9707 1.0272 0.0513 27 1 2.7547 -0.0996 -2.1469 28 1 2.7555 -1.6835 -1.3351 29 1 4.7248 1.3839 -1.7523 30 1 6.2671 0.5932 -1.3465 31 1 7.1445 2.9132 -4.0689 32 1 3.8798 -3.3139 -0.9222 33 1 3.8787 -2.5021 0.6619 34 1 3.9803 -5.7756 0.3410 35 1 3.9792 -4.9630 1.9246 36 1 5.6331 -7.7122 -0.0595 37 1 6.9637 -7.6582 4.3337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129619303.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:10 Heat of formation + Delta-G solvation = 20.500205 kcal Electronic energy + Delta-G solvation = -21455.597889 eV Core-core repulsion = 18064.787325 eV Total energy + Delta-G solvation = -3390.810564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78033 -40.66513 -37.99995 -36.71014 -34.89286 -33.01229 -32.22234 -31.39442 -28.91065 -28.48877 -25.76578 -25.32727 -24.58660 -20.77107 -20.12601 -19.11322 -18.81473 -18.33677 -17.99682 -17.52320 -16.83446 -16.67153 -16.36332 -16.13721 -15.75720 -15.47764 -14.97737 -14.67243 -14.62538 -14.31131 -14.22704 -14.03928 -13.75015 -13.57323 -13.53133 -13.42979 -13.11453 -12.89708 -12.72645 -12.50515 -12.35363 -12.16867 -11.87716 -11.67560 -10.95737 -10.71036 -10.62666 -10.57860 -10.40365 -9.71988 -9.52341 -8.62203 -8.17769 -6.29953 -0.30478 0.42965 0.52026 0.79540 1.40127 1.42996 1.51851 1.52864 1.66336 1.84236 1.84536 2.08228 2.29508 2.45487 3.08706 3.15056 3.23864 3.70161 3.98461 4.02577 4.06962 4.10405 4.16695 4.33625 4.44693 4.50311 4.57897 4.67171 4.83497 5.05273 5.09570 5.10773 5.33781 5.59663 5.86010 6.12472 6.60285 6.67385 6.76150 6.80397 7.31723 7.46318 8.89110 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.002940 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.286215 B = 9520.919346 C =11341.159299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.261 3.739 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.517 3.483 16 O -0.573 6.573 17 C -0.110 4.110 18 S -0.238 6.238 19 C -0.017 4.017 20 C 0.056 3.944 21 C -0.244 4.244 22 S 0.166 5.834 23 C 0.015 3.985 24 N -0.496 5.496 25 H 0.136 0.864 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.038 0.962 30 H 0.003 0.997 31 H 0.265 0.735 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.196 0.804 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -20.570 11.865 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.323 5.323 6 C 0.140 3.860 7 C -0.579 4.579 8 H 0.073 0.927 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.304 3.696 16 O -0.453 6.453 17 C -0.260 4.260 18 S -0.011 6.011 19 C -0.167 4.167 20 C -0.076 4.076 21 C -0.387 4.387 22 S 0.419 5.581 23 C -0.283 4.283 24 N -0.211 5.211 25 H 0.154 0.846 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.214 0.786 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.693 -20.848 12.095 24.766 hybrid contribution -0.781 1.136 -1.311 1.903 sum -6.474 -19.712 10.784 23.383 Atomic orbital electron populations 1.81260 1.14387 1.10762 1.10232 1.29102 0.94876 0.91474 0.91633 1.19837 0.80156 1.06528 1.01512 1.21586 0.78680 1.03630 0.97397 1.47994 1.06904 1.20086 1.57305 1.18834 0.91513 0.83913 0.91784 1.21748 1.36482 1.04042 0.95602 0.92685 1.25730 0.95208 0.94898 1.03007 1.70020 1.39170 1.09548 1.37891 0.85555 0.77843 0.78177 0.80090 1.19130 1.21134 1.19827 1.20267 0.87455 0.83678 0.78201 1.90724 1.16264 1.79485 1.58793 1.23592 1.00714 0.95778 1.05934 1.88219 1.15324 1.20575 1.76972 1.21886 0.97621 0.93602 1.03580 1.19569 1.02496 0.96583 0.88972 1.27219 1.05821 0.99149 1.06469 1.83903 1.46894 1.25095 1.02223 1.28919 1.00140 0.93253 1.05943 1.66089 1.13566 1.24903 1.16519 0.84626 0.86191 0.89469 0.87166 0.94417 0.97910 0.92577 0.84434 0.83838 0.85957 0.87616 0.78643 0.75594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.01 18.54 20.00 0.37 -12.64 16 2 C 0.25 5.06 15.43 89.44 1.38 6.44 16 3 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 4 C 0.11 2.53 5.17 86.38 0.45 2.98 16 5 N -0.59 -20.71 2.46 -826.17 -2.03 -22.74 16 6 C 0.26 12.48 5.16 85.63 0.44 12.92 16 7 C -0.54 -28.96 9.39 25.60 0.24 -28.72 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.01 0.59 5.46 84.66 0.46 1.05 16 10 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 11 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.52 18.69 7.69 87.66 0.67 19.37 16 16 O -0.57 -27.97 15.44 -3.04 -0.05 -28.01 16 17 C -0.11 -2.53 4.98 71.23 0.35 -2.18 16 18 S -0.24 -6.65 20.86 -56.49 -1.18 -7.82 16 19 C -0.02 -0.31 6.37 71.24 0.45 0.14 16 20 C 0.06 1.14 6.00 41.52 0.25 1.39 16 21 C -0.24 -3.99 11.13 66.77 0.74 -3.25 16 22 S 0.17 2.09 23.22 -56.49 -1.31 0.78 16 23 C 0.02 0.23 12.23 130.65 1.60 1.83 16 24 N -0.50 -10.82 10.53 -191.54 -2.02 -12.84 16 25 H 0.14 1.59 7.22 -2.39 -0.02 1.57 16 26 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.11 1.75 6.44 -2.39 -0.02 1.74 16 29 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 30 H 0.00 0.16 7.42 -2.38 -0.02 0.14 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.14 2.34 7.40 -2.39 -0.02 2.33 16 33 H 0.14 2.19 7.19 -2.39 -0.02 2.17 16 34 H 0.12 1.57 8.12 -2.39 -0.02 1.55 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.23 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -80.50 358.67 4.41 -76.08 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.10 Total: 3.63 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 7.22 Total: 11.48 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.39 Total: -101.72 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -2.49 Total: -7.04 kcal Total: -80.50 4.41 -76.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129619303.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.584 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds