Wall clock time and date at job start Tue Mar 31 2020 14:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40298 * 120.49237 * 325.42375 * 3 2 1 5 5 C 1.36963 * 118.48402 * 180.02562 * 4 3 2 6 6 C 1.39258 * 119.38657 * 0.02562 * 5 4 3 7 7 N 1.38970 * 119.52692 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00052 * 185.06325 * 7 6 5 9 9 O 1.21547 * 120.00112 * 354.89568 * 8 7 6 10 10 C 1.47813 * 119.99768 * 175.17964 * 8 7 6 11 11 C 1.39701 * 120.10603 * 359.43978 * 10 8 7 12 12 C 1.38032 * 120.03382 * 179.76675 * 11 10 8 13 13 C 1.38176 * 120.24982 * 0.51644 * 12 11 10 14 14 C 1.39186 * 120.20541 * 359.73986 * 13 12 11 15 15 S 1.76204 * 120.01824 * 179.97438 * 14 13 12 16 16 C 1.76199 * 100.00007 * 275.01120 * 15 14 13 17 17 H 1.08003 * 119.99834 * 355.00421 * 16 15 14 18 18 C 1.38728 * 120.00109 * 174.99925 * 16 15 14 19 19 N 1.31623 * 119.99901 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47302 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47217 * 119.99864 * 20 18 16 23 23 H 1.48498 * 109.47296 * 239.99793 * 20 18 16 24 24 C 1.38867 * 119.96046 * 0.02562 * 14 13 12 25 25 N 1.32515 * 120.94755 * 0.25193 * 6 5 4 26 26 C 1.31703 * 121.65217 * 359.47602 * 25 6 5 27 27 H 1.08010 * 120.75819 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.30640 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99494 * 5.05595 * 7 6 5 30 30 H 1.07994 * 119.97733 * 0.02776 * 11 10 8 31 31 H 1.08002 * 119.87379 * 180.23891 * 12 11 10 32 32 H 1.07995 * 119.90096 * 179.76455 * 13 12 11 33 33 H 0.96998 * 119.99752 * 179.97438 * 19 18 16 34 34 H 1.08007 * 120.12023 * 180.02562 * 24 14 13 35 35 H 1.08004 * 119.74358 * 180.26605 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2803 -0.9944 0.6861 5 6 4.6490 -0.9540 0.6593 6 6 5.2890 0.0651 -0.0416 7 7 6.6777 0.1092 -0.0703 8 6 7.3070 1.1459 -0.6583 9 8 6.6634 1.9945 -1.2440 10 6 8.7803 1.2476 -0.5961 11 6 9.5218 0.2766 0.0815 12 6 10.8979 0.3705 0.1345 13 6 11.5473 1.4287 -0.4719 14 6 10.8183 2.4046 -1.1452 15 16 11.6514 3.7523 -1.9162 16 6 11.8031 4.8447 -0.5420 17 1 11.3446 4.5913 0.4024 18 6 12.5116 6.0302 -0.6732 19 7 13.0709 6.3387 -1.8241 20 14 12.6730 7.1879 0.7839 21 1 11.9605 6.6139 1.9535 22 1 14.1089 7.3658 1.1181 23 1 12.0784 8.5041 0.4385 24 6 9.4338 2.3161 -1.2080 25 7 4.5928 0.9964 -0.6771 26 6 3.2757 0.9923 -0.6814 27 1 2.7611 -1.7746 1.2231 28 1 5.2267 -1.7055 1.1769 29 1 7.1940 -0.6061 0.3330 30 1 9.0182 -0.5500 0.5604 31 1 11.4688 -0.3837 0.6557 32 1 12.6239 1.4985 -0.4237 33 1 13.5659 7.1678 -1.9159 34 1 8.8656 3.0718 -1.7302 35 1 2.7392 1.7642 -1.2132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175764393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:49 Heat of formation + Delta-G solvation = 72.326853 kcal Electronic energy + Delta-G solvation = -22228.531340 eV Core-core repulsion = 18704.524198 eV Total energy + Delta-G solvation = -3524.007143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31629 -39.75580 -38.00182 -36.90149 -35.22557 -33.10967 -32.55430 -31.65263 -30.70489 -30.20936 -25.63320 -25.33895 -24.47786 -23.25163 -22.32213 -20.64105 -19.52397 -18.97329 -18.09850 -17.36219 -16.67776 -15.78202 -15.62238 -15.38680 -15.00003 -14.89385 -14.66847 -14.50845 -14.29486 -13.90872 -13.64519 -13.51584 -13.46445 -13.25786 -13.01383 -12.64514 -12.41132 -11.75827 -11.26642 -11.21082 -11.14114 -11.04793 -10.77002 -10.45347 -10.43463 -9.97369 -9.45675 -9.21351 -9.11258 -8.80965 -8.64323 -8.11515 -6.77203 -6.33411 -4.07847 0.16091 0.79793 1.03813 1.54444 2.29679 2.45195 2.52525 2.94767 3.15940 3.16789 3.25479 3.39598 3.48841 3.54848 3.94070 3.98948 4.18700 4.27763 4.36308 4.50812 4.72832 4.92186 5.03253 5.09226 5.13971 5.29786 5.41744 5.46401 5.61384 5.71243 5.74440 5.83857 6.11736 6.22891 6.41532 6.51649 6.72919 6.87544 7.06966 7.12682 7.53128 7.58388 8.01477 8.28025 9.12667 10.73396 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002436 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.334846 B =11493.015664 C =12261.197472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.265 3.735 3 C -0.129 4.129 4 C 0.004 3.996 5 C -0.212 4.212 6 C 0.400 3.600 7 N -0.658 5.658 8 C 0.554 3.446 9 O -0.456 6.456 10 C -0.157 4.157 11 C -0.091 4.091 12 C -0.139 4.139 13 C -0.050 4.050 14 C -0.106 4.106 15 S -0.033 6.033 16 C -0.521 4.521 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.015 4.015 25 N -0.475 5.475 26 C 0.196 3.804 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.420 0.580 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.270 0.730 34 H 0.142 0.858 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 -18.124 6.498 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.051 4.051 3 C -0.137 4.137 4 C -0.024 4.024 5 C -0.236 4.236 6 C 0.166 3.834 7 N -0.304 5.304 8 C 0.342 3.658 9 O -0.325 6.325 10 C -0.162 4.162 11 C -0.110 4.110 12 C -0.159 4.159 13 C -0.072 4.072 14 C -0.216 4.216 15 S 0.202 5.798 16 C -0.668 4.668 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.037 4.037 25 N -0.189 5.189 26 C 0.033 3.967 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.258 0.742 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.111 -16.456 4.387 21.493 hybrid contribution 0.069 -0.575 2.895 2.952 sum -13.042 -17.031 7.282 22.653 Atomic orbital electron populations 1.81284 1.11919 1.07789 1.08696 1.25346 0.92188 0.93885 0.93674 1.16943 0.85647 1.02182 1.08926 1.21078 0.93119 0.95289 0.92918 1.21156 0.95130 1.01653 1.05638 1.18776 0.85027 0.89875 0.89678 1.43708 1.03432 1.25779 1.57451 1.18682 0.87942 0.80810 0.78338 1.90903 1.66646 1.37734 1.37187 1.19717 0.90924 0.99485 1.06063 1.21119 0.94575 0.97246 0.98027 1.21077 0.94027 0.99229 1.01559 1.22058 1.00682 0.91793 0.92620 1.22885 0.95767 1.01694 1.01287 1.83674 1.71873 1.08390 1.15861 1.22872 1.39651 1.06249 0.98021 0.90530 1.25008 0.94324 0.97286 0.96990 1.69991 1.32627 1.24242 1.23605 0.86060 0.78062 0.79944 0.81195 1.19498 1.20472 1.20403 1.21932 0.93724 0.94728 0.93322 1.67957 1.07319 1.23978 1.19653 1.22975 0.88518 0.94051 0.91117 0.83525 0.83474 0.74174 0.86499 0.85670 0.84913 0.92053 0.84071 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.75 18.54 41.84 0.78 -3.98 16 2 C 0.26 2.34 15.37 -22.48 -0.35 2.00 16 3 C -0.13 -0.95 5.75 -106.69 -0.61 -1.57 16 4 C 0.00 0.02 9.85 -39.27 -0.39 -0.37 16 5 C -0.21 -1.20 9.86 -39.66 -0.39 -1.59 16 6 C 0.40 3.84 7.41 -154.91 -1.15 2.69 16 7 N -0.66 -6.31 5.32 -12.30 -0.07 -6.38 16 8 C 0.55 7.87 7.73 -12.34 -0.10 7.77 16 9 O -0.46 -8.22 14.58 5.32 0.08 -8.14 16 10 C -0.16 -2.32 5.87 -105.00 -0.62 -2.93 16 11 C -0.09 -1.05 9.54 -39.11 -0.37 -1.42 16 12 C -0.14 -1.77 10.02 -39.68 -0.40 -2.17 16 13 C -0.05 -0.84 9.79 -39.25 -0.38 -1.23 16 14 C -0.11 -2.12 5.45 -39.00 -0.21 -2.33 16 15 S -0.03 -0.81 21.41 -107.50 -2.30 -3.11 16 16 C -0.52 -14.25 9.46 30.91 0.29 -13.95 16 17 H 0.08 2.08 7.79 -52.48 -0.41 1.67 16 18 C 0.07 2.00 5.49 -17.46 -0.10 1.90 16 19 N -0.87 -24.89 13.22 55.49 0.73 -24.16 16 20 Si 0.92 20.95 29.55 -169.99 -5.02 15.92 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.02 -0.29 9.34 -38.91 -0.36 -0.65 16 25 N -0.48 -5.71 7.85 -12.05 -0.09 -5.81 16 26 C 0.20 1.76 10.92 -17.10 -0.19 1.58 16 27 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 28 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 29 H 0.42 2.33 6.74 -40.82 -0.27 2.05 16 30 H 0.12 0.79 6.41 -52.49 -0.34 0.46 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.14 2.82 7.65 -52.48 -0.40 2.41 16 35 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -34.71 340.82 -8.75 -43.46 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -2.67 Total: -0.68 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -5.32 Total: -12.27 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.35 Total: -40.32 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.08 Total: -8.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.30 Total: -3.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.71 -8.75 -43.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175764393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.787 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds