Wall clock time and date at job start Tue Mar 31 2020 14:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40298 * 120.49237 * 325.42375 * 3 2 1 5 5 C 1.36963 * 118.48402 * 180.02562 * 4 3 2 6 6 C 1.39258 * 119.38657 * 0.02562 * 5 4 3 7 7 N 1.38970 * 119.52692 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00052 * 185.06325 * 7 6 5 9 9 O 1.21547 * 120.00112 * 354.89568 * 8 7 6 10 10 C 1.47813 * 119.99768 * 175.17964 * 8 7 6 11 11 C 1.39701 * 120.10603 * 359.43978 * 10 8 7 12 12 C 1.38032 * 120.03382 * 179.76675 * 11 10 8 13 13 C 1.38176 * 120.24982 * 0.51644 * 12 11 10 14 14 C 1.39186 * 120.20541 * 359.73986 * 13 12 11 15 15 S 1.76204 * 120.01824 * 179.97438 * 14 13 12 16 16 C 1.76199 * 100.00007 * 275.01120 * 15 14 13 17 17 H 1.08003 * 119.99834 * 355.00421 * 16 15 14 18 18 C 1.38728 * 120.00109 * 174.99925 * 16 15 14 19 19 N 1.31623 * 119.99901 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47302 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47217 * 119.99864 * 20 18 16 23 23 H 1.48498 * 109.47296 * 239.99793 * 20 18 16 24 24 C 1.38867 * 119.96046 * 0.02562 * 14 13 12 25 25 N 1.32515 * 120.94755 * 0.25193 * 6 5 4 26 26 C 1.31703 * 121.65217 * 359.47602 * 25 6 5 27 27 H 1.08010 * 120.75819 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.30640 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99494 * 5.05595 * 7 6 5 30 30 H 1.07994 * 119.97733 * 0.02776 * 11 10 8 31 31 H 1.08002 * 119.87379 * 180.23891 * 12 11 10 32 32 H 1.07995 * 119.90096 * 179.76455 * 13 12 11 33 33 H 0.96998 * 119.99752 * 179.97438 * 19 18 16 34 34 H 1.08007 * 120.12023 * 180.02562 * 24 14 13 35 35 H 1.08004 * 119.74358 * 180.26605 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2803 -0.9944 0.6861 5 6 4.6490 -0.9540 0.6593 6 6 5.2890 0.0651 -0.0416 7 7 6.6777 0.1092 -0.0703 8 6 7.3070 1.1459 -0.6583 9 8 6.6634 1.9945 -1.2440 10 6 8.7803 1.2476 -0.5961 11 6 9.5218 0.2766 0.0815 12 6 10.8979 0.3705 0.1345 13 6 11.5473 1.4287 -0.4719 14 6 10.8183 2.4046 -1.1452 15 16 11.6514 3.7523 -1.9162 16 6 11.8031 4.8447 -0.5420 17 1 11.3446 4.5913 0.4024 18 6 12.5116 6.0302 -0.6732 19 7 13.0709 6.3387 -1.8241 20 14 12.6730 7.1879 0.7839 21 1 11.9605 6.6139 1.9535 22 1 14.1089 7.3658 1.1181 23 1 12.0784 8.5041 0.4385 24 6 9.4338 2.3161 -1.2080 25 7 4.5928 0.9964 -0.6771 26 6 3.2757 0.9923 -0.6814 27 1 2.7611 -1.7746 1.2231 28 1 5.2267 -1.7055 1.1769 29 1 7.1940 -0.6061 0.3330 30 1 9.0182 -0.5500 0.5604 31 1 11.4688 -0.3837 0.6557 32 1 12.6239 1.4985 -0.4237 33 1 13.5659 7.1678 -1.9159 34 1 8.8656 3.0718 -1.7302 35 1 2.7392 1.7642 -1.2132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175764393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:48 Heat of formation + Delta-G solvation = 50.212023 kcal Electronic energy + Delta-G solvation = -22229.490311 eV Core-core repulsion = 18704.524198 eV Total energy + Delta-G solvation = -3524.966114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09654 -40.70301 -39.13613 -37.71491 -36.13060 -34.64547 -33.71338 -32.67048 -31.91796 -31.09159 -27.74208 -26.23795 -25.11368 -24.24677 -23.50592 -21.65607 -20.25694 -20.01006 -19.53678 -18.57723 -17.60492 -16.92846 -16.77566 -16.65774 -16.50775 -15.94583 -15.52359 -15.33296 -15.31756 -15.01479 -14.74888 -14.58664 -14.32296 -14.14926 -13.99859 -13.77915 -13.30471 -13.24071 -13.06148 -12.97850 -12.63152 -12.39428 -11.89390 -11.72968 -11.43413 -11.22346 -10.98687 -10.76059 -10.22740 -9.98098 -9.69719 -9.38179 -8.80307 -8.38666 -6.18537 -0.55415 -0.08572 0.27552 0.29906 1.30781 1.36978 1.47348 1.57248 1.61431 1.64581 1.77505 2.06089 2.24860 2.77794 2.81083 2.94420 2.95289 3.23076 3.42893 3.66590 3.80820 3.87003 3.95962 4.05847 4.14919 4.37038 4.49211 4.64396 4.67730 4.79112 4.93560 5.00811 5.10788 5.20642 5.33895 5.39710 5.52726 5.60464 5.86391 6.07149 6.16735 6.42481 6.82059 7.01935 7.18892 8.68617 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002436 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.334846 B =11493.015664 C =12261.197472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.290 3.710 3 C -0.122 4.122 4 C 0.014 3.986 5 C -0.183 4.183 6 C 0.371 3.629 7 N -0.637 5.637 8 C 0.557 3.443 9 O -0.509 6.509 10 C -0.156 4.156 11 C -0.058 4.058 12 C -0.120 4.120 13 C -0.062 4.062 14 C -0.130 4.130 15 S -0.100 6.100 16 C -0.533 4.533 17 H 0.068 0.932 18 C 0.018 3.982 19 N -0.907 5.907 20 Si 0.993 3.007 21 H -0.265 1.265 22 H -0.266 1.266 23 H -0.274 1.274 24 C -0.042 4.042 25 N -0.526 5.526 26 C 0.181 3.819 27 H 0.185 0.815 28 H 0.196 0.804 29 H 0.441 0.559 30 H 0.184 0.816 31 H 0.177 0.823 32 H 0.129 0.871 33 H 0.273 0.727 34 H 0.106 0.894 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -22.295 10.173 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.025 4.025 3 C -0.129 4.129 4 C -0.013 4.013 5 C -0.205 4.205 6 C 0.139 3.861 7 N -0.285 5.285 8 C 0.345 3.655 9 O -0.381 6.381 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.140 4.140 13 C -0.083 4.083 14 C -0.242 4.242 15 S 0.135 5.865 16 C -0.680 4.680 17 H 0.087 0.913 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.815 3.185 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.199 1.199 24 C -0.064 4.064 25 N -0.240 5.240 26 C 0.019 3.981 27 H 0.203 0.797 28 H 0.213 0.787 29 H 0.284 0.716 30 H 0.201 0.799 31 H 0.194 0.806 32 H 0.147 0.853 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.769 -20.689 8.083 26.133 hybrid contribution 0.108 0.513 1.772 1.848 sum -13.661 -20.176 9.855 26.283 Atomic orbital electron populations 1.81316 1.13232 1.09312 1.10252 1.25444 0.92191 0.92524 0.92338 1.16970 0.84682 1.02439 1.08831 1.21541 0.93129 0.94934 0.91728 1.21551 0.95209 1.00428 1.03323 1.19133 0.84738 0.91078 0.91110 1.43307 1.03832 1.24868 1.56520 1.18596 0.87543 0.81310 0.78079 1.90892 1.67470 1.40060 1.39692 1.19823 0.91789 0.98948 1.05553 1.21790 0.94137 0.96882 0.94821 1.21572 0.94756 0.98086 0.99556 1.22108 1.00689 0.92560 0.92946 1.22472 0.96109 1.01112 1.04460 1.83571 1.73183 1.11801 1.17989 1.23082 1.39551 1.07381 0.98003 0.91348 1.26013 0.93841 0.98879 0.99962 1.70118 1.33489 1.24957 1.25749 0.84985 0.78591 0.77420 0.77511 1.18885 1.19112 1.19917 1.21618 0.93166 0.96287 0.95290 1.67792 1.08657 1.26113 1.21443 1.22975 0.87967 0.95043 0.92111 0.79736 0.78722 0.71598 0.79880 0.80560 0.85314 0.91746 0.87594 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.08 18.54 19.00 0.35 -9.73 16 2 C 0.29 4.68 15.37 88.33 1.36 6.03 16 3 C -0.12 -1.51 5.75 -21.21 -0.12 -1.64 16 4 C 0.01 0.08 9.85 22.47 0.22 0.30 16 5 C -0.18 -1.06 9.86 22.22 0.22 -0.84 16 6 C 0.37 6.03 7.41 133.07 0.99 7.02 16 7 N -0.64 -9.92 5.32 -311.12 -1.65 -11.58 16 8 C 0.56 15.27 7.73 86.78 0.67 15.94 16 9 O -0.51 -19.21 14.58 -3.86 -0.06 -19.27 16 10 C -0.16 -4.40 5.87 -20.11 -0.12 -4.52 16 11 C -0.06 -1.04 9.54 22.57 0.22 -0.83 16 12 C -0.12 -2.50 10.02 22.21 0.22 -2.28 16 13 C -0.06 -2.04 9.79 22.48 0.22 -1.82 16 14 C -0.13 -5.50 5.45 22.65 0.12 -5.38 16 15 S -0.10 -5.39 21.41 -56.49 -1.21 -6.60 16 16 C -0.53 -30.74 9.46 67.94 0.64 -30.09 16 17 H 0.07 3.90 7.79 -2.91 -0.02 3.87 16 18 C 0.02 1.03 5.49 84.84 0.47 1.49 16 19 N -0.91 -54.19 13.22 21.64 0.29 -53.90 16 20 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C -0.04 -1.65 9.34 22.70 0.21 -1.43 16 25 N -0.53 -12.41 7.85 -192.04 -1.51 -13.91 16 26 C 0.18 3.19 10.92 85.04 0.93 4.12 16 27 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 28 H 0.20 -0.70 8.06 -2.91 -0.02 -0.73 16 29 H 0.44 2.14 6.74 -92.71 -0.62 1.51 16 30 H 0.18 0.89 6.41 -2.91 -0.02 0.87 16 31 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.11 4.78 7.65 -2.91 -0.02 4.76 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -86.90 340.82 5.03 -81.87 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 0.54 Total: 1.04 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 6.25 Total: -13.91 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.52 Total: -89.12 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -1.21 Total: -6.60 kcal Total: -86.90 5.03 -81.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175764393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.078 kcal (2) G-P(sol) polarization free energy of solvation -86.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds