Wall clock time and date at job start Tue Mar 31 2020 15:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99566 * 2 1 4 4 H 1.08001 * 119.99743 * 202.31072 * 3 2 1 5 5 C 1.38810 * 120.00720 * 22.31338 * 3 2 1 6 6 N 1.31617 * 119.99463 * 11.14586 * 5 3 2 7 7 Si 1.86794 * 120.00395 * 191.15052 * 5 3 2 8 8 H 1.48500 * 109.47264 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47274 * 119.99788 * 7 5 3 10 10 H 1.48506 * 109.47051 * 239.99757 * 7 5 3 11 11 S 1.65599 * 119.99931 * 180.02562 * 2 1 3 12 12 O 1.42097 * 106.39910 * 156.46184 * 11 2 1 13 13 O 1.42097 * 106.40325 * 23.53608 * 11 2 1 14 14 C 1.76204 * 107.21497 * 269.99753 * 11 2 1 15 15 C 1.39909 * 126.03372 * 270.02503 * 14 11 2 16 16 N 1.30893 * 108.23688 * 179.70079 * 15 14 11 17 17 N 1.40080 * 108.21897 * 0.43791 * 16 15 14 18 18 C 1.40259 * 126.05303 * 179.81973 * 17 16 15 19 19 C 1.38795 * 120.07376 * 179.71488 * 18 17 16 20 20 C 1.38138 * 119.95241 * 179.97438 * 19 18 17 21 21 C 1.38283 * 120.11338 * 359.97438 * 20 19 18 22 22 C 1.38245 * 120.15469 * 0.02562 * 21 20 19 23 23 C 1.38336 * 120.04450 * 0.02562 * 22 21 20 24 24 F 1.35092 * 120.05828 * 180.27461 * 23 22 21 25 25 C 1.35212 * 107.89730 * 359.55641 * 17 16 15 26 26 H 1.08999 * 109.47184 * 274.22312 * 1 2 3 27 27 H 1.08997 * 109.47273 * 34.21846 * 1 2 3 28 28 H 1.08996 * 109.46967 * 154.22127 * 1 2 3 29 29 H 0.97000 * 120.00325 * 179.97438 * 6 5 3 30 30 H 1.07997 * 125.88027 * 359.97438 * 15 14 11 31 31 H 1.07999 * 120.02509 * 359.95108 * 19 18 17 32 32 H 1.08001 * 119.94138 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.92409 * 180.02562 * 21 20 19 34 34 H 1.08003 * 119.98016 * 180.02562 * 22 21 20 35 35 H 1.08001 * 126.14507 * 180.27941 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1690 1.2210 -0.3551 5 6 1.5336 2.3431 0.4564 6 7 0.3817 2.2697 1.0889 7 14 2.3392 4.0044 0.1727 8 1 3.6192 3.8158 -0.5562 9 1 1.4331 4.8631 -0.6313 10 1 2.6062 4.6548 1.4808 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5449 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8865 1.6823 15 6 3.6552 -1.5317 2.4687 16 7 3.4902 -2.0464 3.6608 17 7 2.2817 -2.7547 3.6685 18 6 1.7428 -3.4558 4.7572 19 6 0.5270 -4.1127 4.6284 20 6 -0.0012 -4.8029 5.7021 21 6 0.6795 -4.8410 6.9051 22 6 1.8909 -4.1883 7.0385 23 6 2.4253 -3.4943 5.9678 24 9 3.6117 -2.8610 6.0961 25 6 1.7239 -2.6381 2.4424 26 1 -0.3633 0.0757 1.0249 27 1 -0.3634 0.8497 -0.5779 28 1 -0.3633 -0.9254 -0.4469 29 1 -0.0487 3.0782 1.4082 30 1 4.4947 -0.9323 2.1487 31 1 -0.0060 -4.0840 3.6895 32 1 -0.9475 -5.3137 5.6018 33 1 0.2640 -5.3818 7.7425 34 1 2.4204 -4.2202 7.9793 35 1 0.7845 -3.0674 2.1264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180677046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:16 Heat of formation + Delta-G solvation = 9.290121 kcal Electronic energy + Delta-G solvation = -25151.733436 eV Core-core repulsion = 21194.223591 eV Total energy + Delta-G solvation = -3957.509845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.81885 -41.21012 -38.97884 -35.83479 -35.63553 -34.44540 -33.61120 -31.44489 -31.01851 -30.02484 -28.96679 -26.44147 -23.92574 -23.47079 -23.19883 -20.90636 -20.86261 -18.78310 -18.23031 -17.36797 -16.97179 -16.50048 -16.22761 -15.89101 -15.72463 -14.90058 -14.75325 -14.67448 -14.51026 -14.31298 -13.91309 -13.36768 -13.23035 -12.75125 -12.57105 -12.53616 -12.23551 -11.85800 -11.62077 -11.39421 -11.10141 -11.02633 -11.00375 -10.72609 -10.58905 -10.41951 -10.23530 -10.12671 -9.90313 -9.28923 -9.18962 -9.02803 -8.19738 -8.05271 -6.52409 -4.02467 0.56209 0.85074 1.73064 2.16586 2.45716 2.84339 3.11799 3.18308 3.25114 3.36403 3.92256 4.01516 4.30077 4.50029 4.55294 4.75479 4.81033 4.82689 4.91287 5.11571 5.18608 5.28596 5.54698 5.63108 5.74928 5.84166 5.98449 6.03996 6.23575 6.40379 6.42666 6.79333 6.85710 7.08644 7.17364 7.28398 7.44961 7.73815 8.30183 8.69128 9.14445 10.44544 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.004050 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.023283 B = 6911.169939 C = 7300.969626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.810 5.810 3 C -0.251 4.251 4 H 0.117 0.883 5 C 0.032 3.968 6 N -0.844 5.844 7 Si 0.926 3.074 8 H -0.261 1.261 9 H -0.277 1.277 10 H -0.279 1.279 11 S 2.575 3.425 12 O -0.983 6.983 13 O -1.005 7.005 14 C -0.768 4.768 15 C 0.140 3.860 16 N -0.291 5.291 17 N -0.331 5.331 18 C 0.133 3.867 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.107 4.107 22 C -0.135 4.135 23 C 0.098 3.902 24 F -0.115 7.115 25 C 0.149 3.851 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.272 0.728 30 H 0.199 0.801 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -9.406 9.911 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.636 5.636 3 C -0.397 4.397 4 H 0.134 0.866 5 C -0.179 4.179 6 N -0.484 5.484 7 Si 0.751 3.249 8 H -0.185 1.185 9 H -0.203 1.203 10 H -0.205 1.205 11 S 2.669 3.331 12 O -0.972 6.972 13 O -0.995 6.995 14 C -0.855 4.855 15 C -0.050 4.050 16 N -0.108 5.108 17 N -0.104 5.104 18 C 0.038 3.962 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.154 4.154 23 C 0.076 3.924 24 F -0.093 7.093 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.215 0.785 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.617 -10.209 10.569 14.925 hybrid contribution 0.101 1.157 0.173 1.174 sum -2.516 -9.052 10.741 14.270 Atomic orbital electron populations 1.21290 0.79356 0.99902 1.01764 1.53925 1.13067 1.18751 1.77808 1.20000 1.00973 0.83249 1.35478 0.86596 1.25702 0.96484 1.00925 0.94816 1.70104 1.15638 1.29918 1.32729 0.85849 0.79782 0.80785 0.78451 1.18490 1.20271 1.20463 1.09702 0.73524 0.74037 0.75803 1.93352 1.41523 1.84710 1.77637 1.93330 1.65706 1.61871 1.78561 1.33401 1.03583 1.16748 1.31806 1.23712 0.97253 0.95066 0.88965 1.77620 0.98312 1.13349 1.21543 1.46319 1.17158 1.38939 1.08028 1.17790 0.94843 0.97614 0.85940 1.20870 0.93392 0.98466 1.01261 1.21025 1.00348 0.98666 0.92045 1.21050 0.94154 0.99202 0.98170 1.21115 0.97506 0.98711 0.98066 1.17337 0.84001 0.97932 0.93093 1.91597 1.42295 1.79394 1.96048 1.22397 0.98316 0.95539 0.83338 0.93144 0.90724 0.93853 0.91743 0.78461 0.83999 0.84238 0.84488 0.83953 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.71 8.92 59.85 0.53 3.24 16 2 N -0.81 -19.22 3.31 -66.69 -0.22 -19.44 16 3 C -0.25 -6.19 9.44 -15.06 -0.14 -6.34 16 4 H 0.12 2.85 7.16 -52.49 -0.38 2.47 16 5 C 0.03 0.76 5.13 -17.43 -0.09 0.67 16 6 N -0.84 -20.58 10.57 55.49 0.59 -19.99 16 7 Si 0.93 18.75 29.57 -169.99 -5.03 13.72 16 8 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 9 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 S 2.58 59.10 5.80 -107.50 -0.62 58.47 16 12 O -0.98 -24.66 16.66 -57.17 -0.95 -25.61 16 13 O -1.01 -23.82 16.40 -57.17 -0.94 -24.75 16 14 C -0.77 -16.17 6.17 -39.99 -0.25 -16.41 16 15 C 0.14 2.89 11.82 -17.33 -0.20 2.68 16 16 N -0.29 -6.02 10.80 30.64 0.33 -5.68 16 17 N -0.33 -6.20 3.80 -10.64 -0.04 -6.24 16 18 C 0.13 2.05 6.70 -83.50 -0.56 1.49 16 19 C -0.12 -1.39 9.45 -39.41 -0.37 -1.76 16 20 C -0.10 -0.89 10.04 -39.60 -0.40 -1.28 16 21 C -0.11 -0.88 10.04 -39.56 -0.40 -1.28 16 22 C -0.13 -1.40 10.02 -39.54 -0.40 -1.80 16 23 C 0.10 1.43 7.29 -39.25 -0.29 1.14 16 24 F -0.12 -1.96 15.54 2.25 0.03 -1.92 16 25 C 0.15 2.78 10.54 -17.10 -0.18 2.60 16 26 H 0.05 1.12 7.42 -51.93 -0.39 0.73 16 27 H 0.07 1.67 7.18 -51.93 -0.37 1.30 16 28 H 0.04 0.87 6.93 -51.93 -0.36 0.51 16 29 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 30 H 0.20 3.64 8.06 -52.49 -0.42 3.22 16 31 H 0.14 1.43 6.74 -52.49 -0.35 1.07 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.19 2.81 7.04 -52.49 -0.37 2.44 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -32.11 322.36 -7.77 -39.88 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.04 Total: 3.75 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.74 Total: -17.04 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.66 Total: -51.36 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -1.89 Total: -50.36 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.92 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: 59.10 SS G_CDS: -0.62 Total: 58.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.11 -7.77 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180677046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.175 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds