Wall clock time and date at job start Tue Mar 31 2020 15:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99566 * 2 1 4 4 H 1.08001 * 119.99743 * 202.31072 * 3 2 1 5 5 C 1.38810 * 120.00720 * 22.31338 * 3 2 1 6 6 N 1.31617 * 119.99463 * 11.14586 * 5 3 2 7 7 Si 1.86794 * 120.00395 * 191.15052 * 5 3 2 8 8 H 1.48500 * 109.47264 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47274 * 119.99788 * 7 5 3 10 10 H 1.48506 * 109.47051 * 239.99757 * 7 5 3 11 11 S 1.65599 * 119.99931 * 180.02562 * 2 1 3 12 12 O 1.42097 * 106.39910 * 156.46184 * 11 2 1 13 13 O 1.42097 * 106.40325 * 23.53608 * 11 2 1 14 14 C 1.76204 * 107.21497 * 269.99753 * 11 2 1 15 15 C 1.39909 * 126.03372 * 270.02503 * 14 11 2 16 16 N 1.30893 * 108.23688 * 179.70079 * 15 14 11 17 17 N 1.40080 * 108.21897 * 0.43791 * 16 15 14 18 18 C 1.40259 * 126.05303 * 179.81973 * 17 16 15 19 19 C 1.38795 * 120.07376 * 179.71488 * 18 17 16 20 20 C 1.38138 * 119.95241 * 179.97438 * 19 18 17 21 21 C 1.38283 * 120.11338 * 359.97438 * 20 19 18 22 22 C 1.38245 * 120.15469 * 0.02562 * 21 20 19 23 23 C 1.38336 * 120.04450 * 0.02562 * 22 21 20 24 24 F 1.35092 * 120.05828 * 180.27461 * 23 22 21 25 25 C 1.35212 * 107.89730 * 359.55641 * 17 16 15 26 26 H 1.08999 * 109.47184 * 274.22312 * 1 2 3 27 27 H 1.08997 * 109.47273 * 34.21846 * 1 2 3 28 28 H 1.08996 * 109.46967 * 154.22127 * 1 2 3 29 29 H 0.97000 * 120.00325 * 179.97438 * 6 5 3 30 30 H 1.07997 * 125.88027 * 359.97438 * 15 14 11 31 31 H 1.07999 * 120.02509 * 359.95108 * 19 18 17 32 32 H 1.08001 * 119.94138 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.92409 * 180.02562 * 21 20 19 34 34 H 1.08003 * 119.98016 * 180.02562 * 22 21 20 35 35 H 1.08001 * 126.14507 * 180.27941 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1690 1.2210 -0.3551 5 6 1.5336 2.3431 0.4564 6 7 0.3817 2.2697 1.0889 7 14 2.3392 4.0044 0.1727 8 1 3.6192 3.8158 -0.5562 9 1 1.4331 4.8631 -0.6313 10 1 2.6062 4.6548 1.4808 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5449 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8865 1.6823 15 6 3.6552 -1.5317 2.4687 16 7 3.4902 -2.0464 3.6608 17 7 2.2817 -2.7547 3.6685 18 6 1.7428 -3.4558 4.7572 19 6 0.5270 -4.1127 4.6284 20 6 -0.0012 -4.8029 5.7021 21 6 0.6795 -4.8410 6.9051 22 6 1.8909 -4.1883 7.0385 23 6 2.4253 -3.4943 5.9678 24 9 3.6117 -2.8610 6.0961 25 6 1.7239 -2.6381 2.4424 26 1 -0.3633 0.0757 1.0249 27 1 -0.3634 0.8497 -0.5779 28 1 -0.3633 -0.9254 -0.4469 29 1 -0.0487 3.0782 1.4082 30 1 4.4947 -0.9323 2.1487 31 1 -0.0060 -4.0840 3.6895 32 1 -0.9475 -5.3137 5.6018 33 1 0.2640 -5.3818 7.7425 34 1 2.4204 -4.2202 7.9793 35 1 0.7845 -3.0674 2.1264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180677046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:15 Heat of formation + Delta-G solvation = -12.041519 kcal Electronic energy + Delta-G solvation = -25152.658446 eV Core-core repulsion = 21194.223591 eV Total energy + Delta-G solvation = -3958.434855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.96447 -42.64313 -39.91128 -37.79000 -37.41867 -36.41550 -34.80124 -33.24388 -32.02235 -31.38650 -30.12924 -28.23012 -25.34779 -25.00506 -24.26447 -22.30591 -22.13659 -20.33950 -19.79429 -18.82979 -18.39543 -18.16843 -17.44100 -17.11623 -17.05730 -16.43719 -16.19219 -16.01555 -16.00418 -15.70348 -15.06164 -14.98434 -14.51232 -14.34654 -14.03229 -13.67453 -13.53583 -13.14537 -13.00339 -12.99150 -12.87758 -12.70916 -12.69091 -12.32451 -12.22121 -12.08088 -11.88669 -11.64062 -11.60864 -11.06793 -10.57916 -10.04423 -9.91185 -9.33989 -8.28752 -5.90133 -0.50330 -0.05505 0.01313 0.86849 1.14802 1.22842 1.50168 1.52426 1.65358 2.33233 2.49091 2.73906 2.94071 2.99835 3.18911 3.34797 3.49620 3.62495 3.81417 3.93881 4.12680 4.19708 4.33175 4.50323 4.53486 4.64987 4.85776 4.92701 5.09718 5.12196 5.25774 5.27266 5.30004 5.46914 5.57399 5.69703 5.92744 6.23041 6.48716 6.89609 7.32893 8.69492 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.004050 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.023283 B = 6911.169939 C = 7300.969626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.830 5.830 3 C -0.290 4.290 4 H 0.106 0.894 5 C 0.000 4.000 6 N -0.873 5.873 7 Si 0.982 3.018 8 H -0.261 1.261 9 H -0.270 1.270 10 H -0.279 1.279 11 S 2.622 3.378 12 O -1.006 7.006 13 O -1.010 7.010 14 C -0.800 4.800 15 C 0.124 3.876 16 N -0.312 5.312 17 N -0.323 5.323 18 C 0.079 3.921 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.083 4.083 22 C -0.132 4.132 23 C 0.064 3.936 24 F -0.141 7.141 25 C 0.160 3.840 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.274 0.726 30 H 0.206 0.794 31 H 0.156 0.844 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.165 0.835 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.200 -11.634 11.895 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.657 5.657 3 C -0.433 4.433 4 H 0.124 0.876 5 C -0.208 4.208 6 N -0.514 5.514 7 Si 0.805 3.195 8 H -0.184 1.184 9 H -0.195 1.195 10 H -0.205 1.205 11 S 2.717 3.283 12 O -0.997 6.997 13 O -1.000 7.000 14 C -0.892 4.892 15 C -0.065 4.065 16 N -0.130 5.130 17 N -0.096 5.096 18 C -0.014 4.014 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.101 4.101 22 C -0.151 4.151 23 C 0.043 3.957 24 F -0.119 7.119 25 C 0.012 3.988 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.222 0.778 31 H 0.174 0.826 32 H 0.200 0.800 33 H 0.201 0.799 34 H 0.183 0.817 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.521 -12.385 12.553 18.205 hybrid contribution 0.597 1.448 -0.200 1.579 sum -3.924 -10.937 12.353 16.959 Atomic orbital electron populations 1.21213 0.78680 1.00272 1.01329 1.53641 1.13589 1.18528 1.79976 1.19969 1.00858 0.84403 1.38051 0.87636 1.26284 0.96893 1.03232 0.94366 1.70166 1.16683 1.30526 1.33992 0.85026 0.79002 0.77323 0.78152 1.18447 1.19538 1.20528 1.07021 0.72610 0.73251 0.75390 1.93331 1.42633 1.85199 1.78492 1.93326 1.65936 1.61796 1.78968 1.32861 1.05474 1.20034 1.30866 1.23904 0.97745 0.95628 0.89182 1.77548 0.99909 1.14069 1.21491 1.46468 1.16244 1.38022 1.08912 1.18380 0.97120 1.00331 0.85542 1.21268 0.91904 0.97712 1.03075 1.21593 1.01379 0.96889 0.90892 1.21669 0.92347 0.96805 0.99272 1.21506 0.98383 0.97625 0.97616 1.17928 0.83797 0.99500 0.94441 1.91524 1.43925 1.80260 1.96240 1.22854 0.98681 0.94129 0.83093 0.93786 0.91717 0.92167 0.91624 0.77756 0.82613 0.80023 0.79923 0.81707 0.76393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.83 8.92 127.77 1.14 6.97 16 2 N -0.83 -40.26 3.31 -364.90 -1.21 -41.47 16 3 C -0.29 -14.83 9.44 84.03 0.79 -14.04 16 4 H 0.11 5.43 7.16 -2.91 -0.02 5.41 16 5 C 0.00 0.00 5.13 84.86 0.44 0.43 16 6 N -0.87 -43.63 10.57 21.65 0.23 -43.41 16 7 Si 0.98 39.31 29.57 68.60 2.03 41.34 16 8 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 9 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 11 S 2.62 121.45 5.80 -56.49 -0.33 121.13 16 12 O -1.01 -51.57 16.66 -128.00 -2.13 -53.70 16 13 O -1.01 -47.09 16.40 -128.00 -2.10 -49.19 16 14 C -0.80 -34.06 6.17 22.00 0.14 -33.93 16 15 C 0.12 5.31 11.82 85.24 1.01 6.31 16 16 N -0.31 -13.26 10.80 -56.97 -0.62 -13.87 16 17 N -0.32 -12.10 3.80 -187.59 -0.71 -12.81 16 18 C 0.08 2.34 6.70 38.11 0.26 2.60 16 19 C -0.12 -2.40 9.45 22.38 0.21 -2.19 16 20 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 21 C -0.08 -0.90 10.04 22.28 0.22 -0.68 16 22 C -0.13 -2.33 10.02 22.29 0.22 -2.11 16 23 C 0.06 1.82 7.29 22.48 0.16 1.99 16 24 F -0.14 -4.92 15.54 44.97 0.70 -4.22 16 25 C 0.16 5.88 10.54 83.50 0.88 6.76 16 26 H 0.04 1.98 7.42 -2.39 -0.02 1.96 16 27 H 0.06 2.96 7.18 -2.39 -0.02 2.95 16 28 H 0.06 2.40 6.93 -2.39 -0.02 2.38 16 29 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.21 7.99 8.06 -2.91 -0.02 7.97 16 31 H 0.16 2.58 6.74 -2.91 -0.02 2.56 16 32 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 34 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.22 6.19 7.04 -2.91 -0.02 6.17 16 Total: -1.00 -72.67 322.36 2.70 -69.97 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.14 Total: 14.95 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 5.69 Total: -28.71 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -2.31 Total: -111.56 kcal Atomic # 8 Polarization: -98.66 SS G_CDS: -4.23 Total: -102.89 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.70 Total: -4.22 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: 121.45 SS G_CDS: -0.33 Total: 121.13 kcal Total: -72.67 2.70 -69.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180677046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.932 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds