Wall clock time and date at job start Tue Mar 31 2020 15:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47688 * 270.00495 * 3 2 1 5 5 H 1.48509 * 109.46945 * 30.00322 * 3 2 1 6 6 H 1.48497 * 109.47065 * 150.00102 * 3 2 1 7 7 C 1.37879 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47017 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47219 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54228 * 68.37355 * 11 10 9 13 13 O 1.42102 * 110.54183 * 291.62788 * 11 10 9 14 14 O 1.52201 * 104.45153 * 180.02562 * 11 10 9 15 15 C 1.35890 * 113.99658 * 75.00240 * 14 11 10 16 16 C 1.38810 * 120.01324 * 269.97212 * 15 14 11 17 17 C 1.38182 * 120.09001 * 179.97438 * 16 15 14 18 18 C 1.38135 * 120.10482 * 0.03851 * 17 16 15 19 19 C 1.38901 * 120.05820 * 359.97438 * 18 17 16 20 20 C 1.38590 * 120.02124 * 90.00675 * 15 14 11 21 21 N 1.39833 * 119.93863 * 179.97438 * 19 18 17 22 22 C 1.34563 * 120.44826 * 18.54393 * 21 19 18 23 23 O 1.21289 * 119.61123 * 180.77129 * 22 21 19 24 24 C 1.50495 * 120.76958 * 0.77648 * 22 21 19 25 25 C 1.50683 * 120.12773 * 179.97438 * 18 17 16 26 26 H 0.97001 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47465 * 60.00213 * 9 7 2 28 28 H 1.09004 * 109.47459 * 299.99814 * 9 7 2 29 29 H 1.08999 * 109.46871 * 60.00389 * 10 9 7 30 30 H 1.08998 * 109.47070 * 299.99817 * 10 9 7 31 31 H 1.07996 * 119.95826 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.95043 * 180.02562 * 17 16 15 33 33 H 1.08007 * 120.06468 * 0.26056 * 20 15 14 34 34 H 0.96993 * 119.76806 * 198.51123 * 21 19 18 35 35 H 1.09000 * 109.39738 * 204.66950 * 24 22 21 36 36 H 1.09001 * 109.39663 * 84.94541 * 24 22 21 37 37 H 1.09000 * 109.45874 * 266.08769 * 25 18 17 38 38 H 1.08999 * 109.45892 * 26.05974 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3381 -5.2331 -0.0011 12 8 0.6627 -5.4195 -1.2374 13 8 0.6655 -5.4199 1.2366 14 8 2.4246 -6.2990 -0.0018 15 6 3.0450 -6.4566 1.1969 16 6 4.1751 -5.7087 1.4975 17 6 4.8069 -5.8674 2.7162 18 6 4.3162 -6.7710 3.6385 19 6 3.1858 -7.5222 3.3432 20 6 2.5501 -7.3645 2.1197 21 7 2.6916 -8.4367 4.2785 22 6 3.0463 -8.3466 5.5734 23 8 2.6197 -9.1563 6.3693 24 6 3.9660 -7.2530 6.0455 25 6 5.0050 -6.9448 4.9674 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8724 -3.6048 0.8877 30 1 2.8711 -3.6040 -0.8923 31 1 4.5607 -5.0014 0.7783 32 1 5.6858 -5.2840 2.9478 33 1 1.6736 -7.9506 1.8856 34 1 2.0886 -9.1403 3.9919 35 1 4.4727 -7.5738 6.9557 36 1 3.3839 -6.3554 6.2541 37 1 5.7163 -7.7683 4.9028 38 1 5.5342 -6.0273 5.2248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188230941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:45 Heat of formation + Delta-G solvation = -126.670672 kcal Electronic energy + Delta-G solvation = -25239.876477 eV Core-core repulsion = 21367.638483 eV Total energy + Delta-G solvation = -3872.237994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60222 -40.48138 -38.42359 -36.82428 -35.74068 -35.26224 -34.23630 -33.98472 -31.32248 -30.35966 -29.57464 -25.77770 -25.12358 -23.44844 -23.40118 -22.01189 -20.94984 -19.33410 -18.57703 -17.88051 -17.52983 -16.95356 -16.65874 -16.49095 -16.21340 -15.73731 -15.06078 -15.00266 -14.61112 -14.43311 -14.09995 -13.97657 -13.58813 -13.43267 -13.16887 -12.75925 -12.60274 -12.53450 -11.98619 -11.86772 -11.81212 -11.73690 -11.56590 -11.49260 -11.14486 -11.07355 -10.95526 -10.49350 -10.44874 -10.39245 -9.80896 -9.31156 -9.09082 -8.55703 -8.44598 -6.17602 -4.23634 0.20656 0.78281 0.98691 2.15790 2.31826 2.69235 3.22542 3.23523 3.29007 3.31002 3.93536 3.98015 4.20280 4.22510 4.31734 4.32492 4.48941 4.64869 4.76381 4.82582 4.85801 5.12359 5.17792 5.30439 5.35577 5.44874 5.48716 5.53986 5.57237 5.79917 5.88159 5.93796 6.27220 6.35847 6.45564 6.76672 7.22099 7.27878 7.61201 7.74773 8.10598 8.79401 9.41430 10.93419 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003506 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.761684 B = 7983.493458 C = 8887.388328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.610 4.610 11 S 2.571 3.429 12 O -0.934 6.934 13 O -0.958 6.958 14 O -0.674 6.674 15 C 0.110 3.890 16 C -0.147 4.147 17 C -0.063 4.063 18 C -0.115 4.115 19 C 0.174 3.826 20 C -0.127 4.127 21 N -0.661 5.661 22 C 0.524 3.476 23 O -0.527 6.527 24 C -0.141 4.141 25 C -0.077 4.077 26 H 0.266 0.734 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.414 0.586 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.643 -14.159 8.284 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.741 4.741 11 S 2.672 3.328 12 O -0.932 6.932 13 O -0.956 6.956 14 O -0.632 6.632 15 C 0.068 3.932 16 C -0.168 4.168 17 C -0.081 4.081 18 C -0.119 4.119 19 C 0.078 3.922 20 C -0.149 4.149 21 N -0.305 5.305 22 C 0.313 3.687 23 O -0.403 6.403 24 C -0.181 4.181 25 C -0.114 4.114 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.252 0.748 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.836 -15.025 8.669 21.000 hybrid contribution 0.282 1.217 -0.564 1.370 sum 12.118 -13.808 8.105 20.080 Atomic orbital electron populations 1.69949 1.06136 1.27290 1.49358 1.25066 0.94974 0.99565 0.94833 0.86459 0.79676 0.82805 0.78272 1.20444 1.21000 1.19736 1.20976 0.93065 0.89630 1.52417 0.91951 1.18958 0.92507 0.90277 0.99074 1.30711 1.14256 1.18579 1.10582 1.06194 0.75149 0.76903 0.74588 1.93595 1.70081 1.84466 1.45107 1.93598 1.72574 1.83815 1.45651 1.85774 1.65118 1.72113 1.40175 1.17642 0.94627 0.99551 0.81376 1.21436 0.95308 1.01120 0.98899 1.20716 0.99491 0.96471 0.91463 1.19681 0.95243 0.99008 0.97937 1.17221 0.93332 0.92338 0.89306 1.20789 1.00996 1.00554 0.92594 1.43599 1.48334 1.31069 1.07522 1.20793 0.80897 0.86040 0.80973 1.90791 1.54884 1.42038 1.52560 1.21731 0.97409 0.98525 1.00411 1.20459 0.97081 1.04141 0.89687 0.92461 0.94687 0.94635 0.85783 0.85478 0.83298 0.83498 0.83716 0.74796 0.87028 0.87279 0.89483 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.52 -13.88 9.11 -34.44 -0.31 -14.19 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.61 -11.16 5.40 37.16 0.20 -10.96 16 11 S 2.57 46.49 5.17 -107.50 -0.56 45.93 16 12 O -0.93 -19.90 18.09 -67.03 -1.21 -21.11 16 13 O -0.96 -18.82 16.26 -67.04 -1.09 -19.91 16 14 O -0.67 -10.18 10.05 -51.72 -0.52 -10.70 16 15 C 0.11 1.46 4.79 -39.24 -0.19 1.28 16 16 C -0.15 -1.55 8.46 -39.39 -0.33 -1.89 16 17 C -0.06 -0.52 9.68 -39.64 -0.38 -0.90 16 18 C -0.12 -0.98 5.66 -104.42 -0.59 -1.57 16 19 C 0.17 1.80 6.50 -83.76 -0.54 1.26 16 20 C -0.13 -1.54 8.92 -39.25 -0.35 -1.89 16 21 N -0.66 -6.38 5.36 -10.01 -0.05 -6.44 16 22 C 0.52 5.40 7.72 -11.18 -0.09 5.31 16 23 O -0.53 -7.24 17.91 5.55 0.10 -7.14 16 24 C -0.14 -0.96 6.07 -28.05 -0.17 -1.13 16 25 C -0.08 -0.43 5.99 -27.96 -0.17 -0.60 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.12 1.96 6.60 -51.92 -0.34 1.62 16 30 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 31 H 0.15 1.32 7.49 -52.49 -0.39 0.93 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.41 3.47 8.83 -40.82 -0.36 3.11 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -36.23 337.73 -10.13 -46.36 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.44 Total: 0.66 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -3.16 Total: -23.17 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.68 Total: -31.54 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -2.72 Total: -58.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 46.49 SS G_CDS: -0.56 Total: 45.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.23 -10.13 -46.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188230941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.309 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds