Wall clock time and date at job start Tue Mar 31 2020 15:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47688 * 270.00495 * 3 2 1 5 5 H 1.48509 * 109.46945 * 30.00322 * 3 2 1 6 6 H 1.48497 * 109.47065 * 150.00102 * 3 2 1 7 7 C 1.37879 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47017 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47219 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54228 * 68.37355 * 11 10 9 13 13 O 1.42102 * 110.54183 * 291.62788 * 11 10 9 14 14 O 1.52201 * 104.45153 * 180.02562 * 11 10 9 15 15 C 1.35890 * 113.99658 * 75.00240 * 14 11 10 16 16 C 1.38810 * 120.01324 * 269.97212 * 15 14 11 17 17 C 1.38182 * 120.09001 * 179.97438 * 16 15 14 18 18 C 1.38135 * 120.10482 * 0.03851 * 17 16 15 19 19 C 1.38901 * 120.05820 * 359.97438 * 18 17 16 20 20 C 1.38590 * 120.02124 * 90.00675 * 15 14 11 21 21 N 1.39833 * 119.93863 * 179.97438 * 19 18 17 22 22 C 1.34563 * 120.44826 * 18.54393 * 21 19 18 23 23 O 1.21289 * 119.61123 * 180.77129 * 22 21 19 24 24 C 1.50495 * 120.76958 * 0.77648 * 22 21 19 25 25 C 1.50683 * 120.12773 * 179.97438 * 18 17 16 26 26 H 0.97001 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47465 * 60.00213 * 9 7 2 28 28 H 1.09004 * 109.47459 * 299.99814 * 9 7 2 29 29 H 1.08999 * 109.46871 * 60.00389 * 10 9 7 30 30 H 1.08998 * 109.47070 * 299.99817 * 10 9 7 31 31 H 1.07996 * 119.95826 * 0.02562 * 16 15 14 32 32 H 1.08002 * 119.95043 * 180.02562 * 17 16 15 33 33 H 1.08007 * 120.06468 * 0.26056 * 20 15 14 34 34 H 0.96993 * 119.76806 * 198.51123 * 21 19 18 35 35 H 1.09000 * 109.39738 * 204.66950 * 24 22 21 36 36 H 1.09001 * 109.39663 * 84.94541 * 24 22 21 37 37 H 1.09000 * 109.45874 * 266.08769 * 25 18 17 38 38 H 1.08999 * 109.45892 * 26.05974 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3381 -5.2331 -0.0011 12 8 0.6627 -5.4195 -1.2374 13 8 0.6655 -5.4199 1.2366 14 8 2.4246 -6.2990 -0.0018 15 6 3.0450 -6.4566 1.1969 16 6 4.1751 -5.7087 1.4975 17 6 4.8069 -5.8674 2.7162 18 6 4.3162 -6.7710 3.6385 19 6 3.1858 -7.5222 3.3432 20 6 2.5501 -7.3645 2.1197 21 7 2.6916 -8.4367 4.2785 22 6 3.0463 -8.3466 5.5734 23 8 2.6197 -9.1563 6.3693 24 6 3.9660 -7.2530 6.0455 25 6 5.0050 -6.9448 4.9674 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8724 -3.6048 0.8877 30 1 2.8711 -3.6040 -0.8923 31 1 4.5607 -5.0014 0.7783 32 1 5.6858 -5.2840 2.9478 33 1 1.6736 -7.9506 1.8856 34 1 2.0886 -9.1403 3.9919 35 1 4.4727 -7.5738 6.9557 36 1 3.3839 -6.3554 6.2541 37 1 5.7163 -7.7683 4.9028 38 1 5.5342 -6.0273 5.2248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188230941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:45 Heat of formation + Delta-G solvation = -153.383930 kcal Electronic energy + Delta-G solvation = -25241.034851 eV Core-core repulsion = 21367.638483 eV Total energy + Delta-G solvation = -3873.396368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47634 -41.45141 -39.31278 -38.35753 -37.26768 -36.14662 -35.85983 -34.85132 -33.19021 -31.14003 -30.36546 -27.66519 -25.83761 -24.36682 -24.19285 -23.58646 -22.12492 -20.31107 -19.52919 -19.27071 -18.59538 -18.44283 -17.76679 -17.61936 -17.17671 -16.64025 -16.47985 -16.28719 -16.13141 -15.29280 -15.09102 -14.77986 -14.71637 -14.46593 -14.33818 -14.02346 -13.81055 -13.69362 -13.44671 -13.38674 -13.27273 -12.92295 -12.80227 -12.67036 -12.37181 -12.27471 -12.14739 -12.03967 -11.81301 -11.72324 -11.19598 -11.08931 -10.61924 -9.93578 -9.24090 -8.23121 -6.36977 -1.06360 -0.07638 0.08913 1.09783 1.38299 1.45152 1.46599 1.57575 1.92239 2.40297 2.45820 2.57161 2.91894 3.11312 3.29464 3.56103 3.61823 3.69510 3.86935 3.96623 4.00760 4.13975 4.14922 4.32469 4.38357 4.71890 4.80159 4.82316 4.88660 4.95079 5.08933 5.11997 5.23124 5.26754 5.28105 5.54690 5.65339 5.70912 6.02058 6.07329 6.76805 6.83850 7.33448 8.89264 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003506 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.761684 B = 7983.493458 C = 8887.388328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.022 3.978 10 C -0.602 4.602 11 S 2.593 3.407 12 O -0.977 6.977 13 O -0.981 6.981 14 O -0.663 6.663 15 C 0.064 3.936 16 C -0.148 4.148 17 C -0.053 4.053 18 C -0.103 4.103 19 C 0.163 3.837 20 C -0.145 4.145 21 N -0.661 5.661 22 C 0.518 3.482 23 O -0.570 6.570 24 C -0.139 4.139 25 C -0.072 4.072 26 H 0.266 0.734 27 H 0.006 0.994 28 H 0.011 0.989 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.192 0.808 33 H 0.137 0.863 34 H 0.414 0.586 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 -13.066 9.630 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.175 1.175 7 C -0.574 4.574 8 H 0.101 0.899 9 C -0.016 4.016 10 C -0.733 4.733 11 S 2.694 3.306 12 O -0.975 6.975 13 O -0.980 6.980 14 O -0.622 6.622 15 C 0.022 3.978 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.107 4.107 19 C 0.066 3.934 20 C -0.168 4.168 21 N -0.305 5.305 22 C 0.309 3.691 23 O -0.449 6.449 24 C -0.178 4.178 25 C -0.109 4.109 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.209 0.791 33 H 0.155 0.845 34 H 0.252 0.748 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.926 -13.928 9.987 23.396 hybrid contribution -0.925 0.741 -0.900 1.488 sum 15.002 -13.187 9.087 21.943 Atomic orbital electron populations 1.70108 1.08186 1.28283 1.50989 1.26118 0.95791 1.03914 0.94440 0.85309 0.78838 0.77598 0.78491 1.19946 1.21236 1.17530 1.21517 0.94220 0.90340 1.51327 0.89929 1.18819 0.93443 0.92769 0.96604 1.30544 1.13321 1.16013 1.13388 1.05428 0.75069 0.76863 0.73195 1.93533 1.71919 1.85251 1.46794 1.93551 1.73710 1.84280 1.46416 1.85737 1.64488 1.70611 1.41396 1.18135 0.96427 1.02022 0.81205 1.21833 0.94164 1.00633 1.00261 1.21244 1.00081 0.95901 0.89913 1.20191 0.93884 0.97272 0.99305 1.17370 0.94284 0.93010 0.88698 1.20900 1.01368 1.00955 0.93586 1.43672 1.48165 1.30966 1.07654 1.21562 0.80746 0.86316 0.80474 1.90770 1.56708 1.43967 1.53461 1.21841 0.97187 0.97176 1.01582 1.20630 0.96607 1.06562 0.87103 0.92495 0.97612 0.97085 0.82733 0.82954 0.81377 0.79061 0.84487 0.74806 0.85158 0.86635 0.87751 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 3 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.54 -28.10 9.11 25.60 0.23 -27.86 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.12 4.98 29.85 0.15 1.27 16 10 C -0.60 -21.44 5.40 71.98 0.39 -21.05 16 11 S 2.59 95.67 5.17 -56.49 -0.29 95.38 16 12 O -0.98 -43.32 18.09 -118.57 -2.15 -45.46 16 13 O -0.98 -39.85 16.26 -118.57 -1.93 -41.78 16 14 O -0.66 -20.04 10.05 -61.40 -0.62 -20.66 16 15 C 0.06 1.64 4.79 22.49 0.11 1.74 16 16 C -0.15 -2.66 8.46 22.39 0.19 -2.47 16 17 C -0.05 -0.62 9.68 22.23 0.22 -0.41 16 18 C -0.10 -1.37 5.66 -19.74 -0.11 -1.48 16 19 C 0.16 3.15 6.50 38.15 0.25 3.40 16 20 C -0.15 -3.54 8.92 22.48 0.20 -3.34 16 21 N -0.66 -12.54 5.36 -304.10 -1.63 -14.17 16 22 C 0.52 10.14 7.72 87.63 0.68 10.82 16 23 O -0.57 -15.68 17.91 -3.06 -0.05 -15.73 16 24 C -0.14 -1.45 6.07 29.74 0.18 -1.27 16 25 C -0.07 -0.45 5.99 29.80 0.18 -0.28 16 26 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.15 4.48 6.60 -2.39 -0.02 4.47 16 30 H 0.15 4.62 8.14 -2.39 -0.02 4.60 16 31 H 0.17 2.28 7.49 -2.91 -0.02 2.26 16 32 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.41 7.32 8.83 -92.71 -0.82 6.50 16 35 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.13 0.03 8.06 -2.39 -0.02 0.01 16 Total: -1.00 -82.37 337.73 -0.95 -83.32 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.29 Total: 11.70 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.12 Total: -40.70 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.35 Total: -69.50 kcal Atomic # 8 Polarization: -118.89 SS G_CDS: -4.74 Total: -123.63 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 95.67 SS G_CDS: -0.29 Total: 95.38 kcal Total: -82.37 -0.95 -83.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188230941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.061 kcal (2) G-P(sol) polarization free energy of solvation -82.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds