Wall clock time and date at job start Tue Mar 31 2020 14:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 S 1.81411 * 109.47150 * 120.00116 * 2 1 3 14 14 C 1.76202 * 102.99506 * 294.99862 * 13 2 1 15 15 N 1.29636 * 125.41816 * 359.69051 * 14 13 2 16 16 N 1.37761 * 115.60938 * 179.79489 * 15 14 13 17 17 C 1.29576 * 115.62451 * 0.50501 * 16 15 14 18 18 N 1.38997 * 125.40782 * 179.75715 * 17 16 15 19 19 C 1.46496 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.50704 * 109.47506 * 180.02562 * 19 18 17 21 21 C 1.34506 * 125.79234 * 89.99754 * 20 19 18 22 22 C 1.41384 * 106.84187 * 180.02562 * 21 20 19 23 23 C 1.34506 * 106.84129 * 359.97438 * 22 21 20 24 24 O 1.34305 * 125.78390 * 269.70130 * 20 19 18 25 25 S 1.76044 * 109.19084 * 359.74050 * 17 16 15 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 29 29 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 30 30 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97004 * 120.00168 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47363 * 300.00154 * 19 18 17 34 34 H 1.09000 * 109.47151 * 59.99944 * 19 18 17 35 35 H 1.08002 * 126.57783 * 359.97072 * 21 20 19 36 36 H 1.07998 * 126.57870 * 179.97438 * 22 21 20 37 37 H 1.07998 * 125.79135 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6802 -1.6981 -1.2172 11 1 6.5885 -1.7772 -3.6395 12 1 6.4912 0.3564 -2.4915 13 16 2.1347 -0.8552 1.4812 14 6 1.5827 0.1846 2.7922 15 7 0.9144 1.2860 2.6471 16 7 0.5815 1.9386 3.8137 17 6 0.9875 1.3741 4.9071 18 7 0.7700 1.8577 6.1919 19 6 0.0272 3.1048 6.3891 20 6 -0.0678 3.4054 7.8628 21 6 0.8150 4.1263 8.5771 22 6 0.3387 4.1552 9.9080 23 6 -0.8070 3.4507 9.9273 24 8 -1.0512 3.0036 8.6845 25 16 1.8577 -0.1030 4.5071 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2055 31 1 4.0615 -2.2523 -4.0302 32 1 1.1101 1.3694 6.9580 33 1 0.5458 3.9203 5.8851 34 1 -0.9752 3.0002 5.9740 35 1 1.7154 4.5928 8.2055 36 1 0.8052 4.6483 10.7480 37 1 -1.4272 3.2771 10.7942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188268491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:55 Heat of formation + Delta-G solvation = 75.065275 kcal Electronic energy + Delta-G solvation = -21053.531726 eV Core-core repulsion = 17665.087282 eV Total energy + Delta-G solvation = -3388.444445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.05186 -39.25170 -36.56709 -34.60713 -33.48595 -32.16161 -31.66508 -29.82085 -27.46422 -26.50905 -24.42089 -23.33116 -22.23400 -21.39233 -20.81279 -20.52535 -19.43729 -17.87412 -17.15337 -16.46793 -16.38143 -16.25063 -15.53780 -15.17864 -14.69850 -14.57872 -14.28088 -13.92925 -13.30650 -13.26090 -13.13072 -12.93386 -12.67772 -12.48936 -11.82101 -11.65536 -11.43264 -11.26439 -10.86093 -10.73669 -10.64273 -10.45264 -10.41481 -9.96074 -9.52933 -9.49481 -9.45152 -9.19156 -9.07954 -8.65240 -8.41492 -7.16716 -6.06710 -4.09468 0.48834 0.98376 1.15943 1.24125 1.80854 2.10913 2.45441 2.48488 2.86854 3.04960 3.33382 3.37207 3.40664 4.08919 4.42826 4.54009 4.56826 4.69652 4.92292 5.11706 5.28806 5.30663 5.32231 5.45686 5.58064 5.69340 5.81485 5.98484 6.09919 6.40510 6.49504 6.58489 6.63557 6.73325 6.83295 7.46944 7.51872 7.89825 8.18399 8.25273 8.94979 9.55108 11.04085 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.002235 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.682154 B =12522.809736 C =12922.470564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 H 0.091 0.909 4 C 0.038 3.962 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.276 1.276 13 S 0.037 5.963 14 C 0.030 3.970 15 N -0.269 5.269 16 N -0.355 5.355 17 C 0.305 3.695 18 N -0.692 5.692 19 C 0.220 3.780 20 C -0.039 4.039 21 C -0.179 4.179 22 C -0.219 4.219 23 C -0.028 4.028 24 O -0.171 6.171 25 S 0.048 5.952 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.416 0.584 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 8.020 25.670 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 H 0.110 0.890 4 C -0.001 4.001 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.267 5.733 14 C -0.369 4.369 15 N -0.098 5.098 16 N -0.191 5.191 17 C -0.079 4.079 18 N -0.337 5.337 19 C 0.095 3.905 20 C -0.089 4.089 21 C -0.200 4.200 22 C -0.238 4.238 23 C -0.096 4.096 24 O -0.066 6.066 25 S 0.281 5.719 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.351 7.257 25.156 27.194 hybrid contribution 0.683 1.160 0.454 1.421 sum -6.667 8.417 25.610 27.770 Atomic orbital electron populations 1.22096 0.94112 1.02111 1.02340 1.23825 0.97548 1.02797 0.94682 0.89032 1.19106 0.96561 0.95729 0.88720 1.21217 0.91415 1.35001 1.08780 0.91860 1.24986 0.98590 0.95014 0.95501 1.69943 1.35802 1.35325 1.12035 0.86632 0.85493 0.78346 0.77481 1.19979 1.21317 1.20153 1.86223 1.66160 1.27310 0.93608 1.31046 1.03289 1.01770 1.00785 1.75475 1.14169 1.04632 1.15563 1.75044 1.25638 1.25991 0.92451 1.25772 0.96972 0.94096 0.91014 1.43750 1.61963 1.26365 1.01631 1.19598 0.98340 0.86747 0.85839 1.22241 0.90218 1.03240 0.93194 1.21774 1.01495 1.03115 0.93579 1.21911 0.98200 1.05417 0.98253 1.24178 0.99367 1.00180 0.85888 1.84066 1.43289 1.61003 1.18259 1.85510 1.59983 1.24829 1.01552 0.92331 0.92171 0.91739 0.93959 0.95312 0.92774 0.74606 0.88142 0.89557 0.82986 0.83110 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.06 37.16 0.34 -2.32 16 2 C -0.06 -1.20 2.46 -26.74 -0.07 -1.27 16 3 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 4 C 0.04 0.93 4.45 -27.88 -0.12 0.80 16 5 C -0.53 -14.18 8.53 -34.44 -0.29 -14.47 16 6 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 S 0.04 0.71 20.90 -107.50 -2.25 -1.53 16 14 C 0.03 0.53 7.58 51.84 0.39 0.92 16 15 N -0.27 -5.01 9.96 31.11 0.31 -4.70 16 16 N -0.36 -5.93 11.68 30.86 0.36 -5.57 16 17 C 0.31 4.13 8.42 -87.39 -0.74 3.39 16 18 N -0.69 -6.79 5.72 -62.01 -0.35 -7.15 16 19 C 0.22 1.93 6.51 -5.19 -0.03 1.90 16 20 C -0.04 -0.32 6.69 -35.63 -0.24 -0.55 16 21 C -0.18 -1.32 10.81 -39.70 -0.43 -1.75 16 22 C -0.22 -1.38 10.91 -39.70 -0.43 -1.81 16 23 C -0.03 -0.17 12.09 29.41 0.36 0.19 16 24 O -0.17 -1.45 10.65 5.68 0.06 -1.39 16 25 S 0.05 0.66 23.39 -107.50 -2.51 -1.85 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.08 6.24 -51.93 -0.32 0.75 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.42 3.26 8.59 -40.82 -0.35 2.90 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.21 0.48 8.06 -52.49 -0.42 0.05 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -31.25 351.33 -9.18 -40.43 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.44 Total: -1.30 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.37 Total: -13.37 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 1.05 Total: -42.55 kcal Atomic # 8 Polarization: -1.45 SS G_CDS: 0.06 Total: -1.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -4.76 Total: -3.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.25 -9.18 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188268491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.493 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds