Wall clock time and date at job start Tue Mar 31 2020 14:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 S 1.81411 * 109.47150 * 120.00116 * 2 1 3 14 14 C 1.76202 * 102.99506 * 294.99862 * 13 2 1 15 15 N 1.29636 * 125.41816 * 359.69051 * 14 13 2 16 16 N 1.37761 * 115.60938 * 179.79489 * 15 14 13 17 17 C 1.29576 * 115.62451 * 0.50501 * 16 15 14 18 18 N 1.38997 * 125.40782 * 179.75715 * 17 16 15 19 19 C 1.46496 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.50704 * 109.47506 * 180.02562 * 19 18 17 21 21 C 1.34506 * 125.79234 * 89.99754 * 20 19 18 22 22 C 1.41384 * 106.84187 * 180.02562 * 21 20 19 23 23 C 1.34506 * 106.84129 * 359.97438 * 22 21 20 24 24 O 1.34305 * 125.78390 * 269.70130 * 20 19 18 25 25 S 1.76044 * 109.19084 * 359.74050 * 17 16 15 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 29 29 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 30 30 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97004 * 120.00168 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47363 * 300.00154 * 19 18 17 34 34 H 1.09000 * 109.47151 * 59.99944 * 19 18 17 35 35 H 1.08002 * 126.57783 * 359.97072 * 21 20 19 36 36 H 1.07998 * 126.57870 * 179.97438 * 22 21 20 37 37 H 1.07998 * 125.79135 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6802 -1.6981 -1.2172 11 1 6.5885 -1.7772 -3.6395 12 1 6.4912 0.3564 -2.4915 13 16 2.1347 -0.8552 1.4812 14 6 1.5827 0.1846 2.7922 15 7 0.9144 1.2860 2.6471 16 7 0.5815 1.9386 3.8137 17 6 0.9875 1.3741 4.9071 18 7 0.7700 1.8577 6.1919 19 6 0.0272 3.1048 6.3891 20 6 -0.0678 3.4054 7.8628 21 6 0.8150 4.1263 8.5771 22 6 0.3387 4.1552 9.9080 23 6 -0.8070 3.4507 9.9273 24 8 -1.0512 3.0036 8.6845 25 16 1.8577 -0.1030 4.5071 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2055 31 1 4.0615 -2.2523 -4.0302 32 1 1.1101 1.3694 6.9580 33 1 0.5458 3.9203 5.8851 34 1 -0.9752 3.0002 5.9740 35 1 1.7154 4.5928 8.2055 36 1 0.8052 4.6483 10.7480 37 1 -1.4272 3.2771 10.7942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188268491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:55 Heat of formation + Delta-G solvation = 56.805617 kcal Electronic energy + Delta-G solvation = -21054.323525 eV Core-core repulsion = 17665.087282 eV Total energy + Delta-G solvation = -3389.236243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.58391 -40.46549 -37.52235 -36.44825 -34.10972 -34.00552 -32.63507 -30.77423 -29.33302 -27.26963 -25.59098 -25.25201 -22.75089 -22.59669 -22.10207 -21.48324 -20.52403 -18.59323 -18.47890 -18.26765 -17.43159 -17.03644 -16.64504 -16.51906 -16.39852 -15.62164 -15.36517 -14.76824 -14.73936 -14.48953 -14.17173 -13.80347 -13.62534 -13.57906 -13.36490 -13.25340 -13.06852 -12.67301 -12.55183 -12.42462 -12.26302 -11.94822 -11.52520 -11.28319 -11.13766 -11.00360 -10.92473 -10.61304 -10.51802 -9.69980 -9.60634 -8.60136 -8.18022 -6.27053 -0.68290 -0.24307 0.02027 0.36669 0.65332 1.24354 1.30756 1.43819 1.45724 1.53312 1.58424 1.90394 2.17392 2.43766 3.17076 3.51371 3.59435 4.05288 4.06948 4.08175 4.08642 4.19196 4.30866 4.42540 4.52157 4.84875 4.89863 4.96834 4.98693 5.09853 5.20547 5.40546 5.42408 5.50811 5.52572 5.78760 6.01641 6.11850 6.18146 6.84407 6.98198 7.41029 8.93070 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029886 B = 0.002235 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.682154 B =12522.809736 C =12922.470564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 H 0.079 0.921 4 C 0.045 3.955 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.270 1.270 13 S 0.022 5.978 14 C 0.006 3.994 15 N -0.288 5.288 16 N -0.385 5.385 17 C 0.313 3.687 18 N -0.672 5.672 19 C 0.222 3.778 20 C -0.057 4.057 21 C -0.179 4.179 22 C -0.231 4.231 23 C -0.023 4.023 24 O -0.189 6.189 25 S 0.108 5.892 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.428 0.572 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 8.683 28.716 30.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 H 0.097 0.903 4 C 0.007 3.993 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.195 1.195 13 S 0.251 5.749 14 C -0.393 4.393 15 N -0.117 5.117 16 N -0.224 5.224 17 C -0.070 4.070 18 N -0.317 5.317 19 C 0.097 3.903 20 C -0.107 4.107 21 C -0.199 4.199 22 C -0.250 4.250 23 C -0.091 4.091 24 O -0.086 6.086 25 S 0.341 5.659 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.268 0.732 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.879 7.934 28.258 30.147 hybrid contribution 0.464 1.046 -0.208 1.163 sum -6.415 8.980 28.050 30.143 Atomic orbital electron populations 1.21999 0.92217 1.02637 1.02740 1.23497 0.99052 1.01472 0.94212 0.90275 1.18884 0.95607 0.94784 0.90075 1.21542 0.92703 1.34501 1.08642 0.91817 1.25823 1.03227 0.94787 0.95239 1.70061 1.37539 1.36417 1.12713 0.85630 0.80017 0.78549 0.77717 1.19095 1.20950 1.19515 1.86021 1.67389 1.27705 0.93766 1.30788 1.04342 1.01852 1.02360 1.75431 1.13929 1.04922 1.17405 1.75030 1.27834 1.26798 0.92704 1.25998 0.95589 0.93797 0.91652 1.43970 1.60689 1.26467 1.00565 1.19584 0.97789 0.86074 0.86817 1.22048 0.91030 1.04770 0.92861 1.22036 1.01460 1.02276 0.94158 1.22233 0.98521 1.05828 0.98398 1.24934 0.99541 0.98858 0.85741 1.84054 1.43645 1.61602 1.19252 1.85251 1.58996 1.23862 0.97781 0.91713 0.91850 0.91144 0.96060 0.97174 0.92731 0.73200 0.87821 0.90202 0.82095 0.81169 0.74503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.06 71.98 0.65 -4.35 16 2 C -0.05 -2.19 2.46 30.59 0.08 -2.11 16 3 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 4 C 0.05 2.30 4.45 29.85 0.13 2.43 16 5 C -0.54 -29.42 8.53 25.60 0.22 -29.20 16 6 H 0.06 3.42 7.60 -2.91 -0.02 3.40 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 9 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 S 0.02 0.86 20.90 -56.49 -1.18 -0.32 16 14 C 0.01 0.22 7.58 130.57 0.99 1.21 16 15 N -0.29 -10.61 9.96 -55.47 -0.55 -11.16 16 16 N -0.39 -12.54 11.68 -56.29 -0.66 -13.20 16 17 C 0.31 7.95 8.42 179.22 1.51 9.46 16 18 N -0.67 -11.86 5.72 -350.11 -2.00 -13.86 16 19 C 0.22 3.60 6.51 85.64 0.56 4.15 16 20 C -0.06 -0.84 6.69 24.83 0.17 -0.67 16 21 C -0.18 -2.25 10.81 22.19 0.24 -2.01 16 22 C -0.23 -2.30 10.91 22.19 0.24 -2.06 16 23 C -0.02 -0.22 12.09 66.97 0.81 0.59 16 24 O -0.19 -2.86 10.65 -2.59 -0.03 -2.89 16 25 S 0.11 2.77 23.39 -56.49 -1.32 1.45 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 2.28 6.24 -2.39 -0.01 2.26 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 32 H 0.43 5.60 8.59 -92.71 -0.80 4.81 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.24 0.27 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -67.63 351.33 2.93 -64.70 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 0.31 Total: 5.63 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 6.06 Total: -21.65 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.93 Total: -92.75 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.03 Total: -2.89 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -2.50 Total: 1.13 kcal Total: -67.63 2.93 -64.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188268491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.504 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds