Wall clock time and date at job start Tue Mar 31 2020 15:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46502 * 120.00062 * 2 1
4 4 C 1.37997 * 120.00033 * 180.02562 * 2 1 3
5 5 N 1.28927 * 125.03954 * 359.69205 * 4 2 1
6 6 C 1.34301 * 118.09258 * 179.77518 * 5 4 2
7 7 S 1.77275 * 137.06512 * 180.18379 * 6 5 4
8 8 C 1.75333 * 91.53441 * 180.31978 * 7 6 5
9 9 C 1.46125 * 124.98370 * 179.97438 * 8 7 6
10 10 O 1.21783 * 119.99729 * 180.02562 * 9 8 7
11 11 N 1.34769 * 120.00197 * 0.02562 * 9 8 7
12 12 C 1.46499 * 120.00178 * 179.97438 * 11 9 8
13 13 C 1.53004 * 109.47482 * 179.97438 * 12 11 9
14 14 C 1.50697 * 109.47156 * 179.97438 * 13 12 11
15 15 H 1.07995 * 119.99937 * 0.02562 * 14 13 12
16 16 C 1.37884 * 119.99703 * 180.02562 * 14 13 12
17 17 N 1.31507 * 119.99885 * 359.97438 * 16 14 13
18 18 Si 1.86794 * 119.99657 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47258 * 59.99892 * 18 16 14
20 20 H 1.48506 * 109.46847 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.47289 * 299.99659 * 18 16 14
22 22 C 1.35558 * 110.02857 * 359.97438 * 8 7 6
23 23 C 1.37576 * 113.53152 * 0.50750 * 6 5 4
24 24 S 1.75651 * 125.03917 * 179.97438 * 4 2 1
25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3
26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3
27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3
28 28 H 1.09001 * 109.47274 * 0.02562 * 3 2 1
29 29 H 1.09000 * 109.47166 * 120.00409 * 3 2 1
30 30 H 1.09004 * 109.47230 * 240.00361 * 3 2 1
31 31 H 0.97001 * 119.99911 * 359.97438 * 11 9 8
32 32 H 1.09003 * 109.46832 * 300.00122 * 12 11 9
33 33 H 1.09006 * 109.46883 * 60.00045 * 12 11 9
34 34 H 1.08995 * 109.47007 * 300.00785 * 13 12 11
35 35 H 1.09008 * 109.46573 * 59.99782 * 13 12 11
36 36 H 0.96997 * 119.99888 * 180.02562 * 17 16 14
37 37 H 1.07999 * 122.36374 * 180.02562 * 22 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1550 -1.1951 -0.0005
5 7 1.6109 -2.3639 0.0046
6 6 2.4182 -3.4373 -0.0014
7 16 2.2332 -5.2003 -0.0027
8 6 3.9715 -5.4299 -0.0031
9 6 4.6453 -6.7265 -0.0036
10 8 5.8619 -6.7804 -0.0033
11 7 3.9204 -7.8626 -0.0043
12 6 4.5960 -9.1626 -0.0054
13 6 3.5513 -10.2804 -0.0055
14 6 4.2463 -11.6175 -0.0072
15 1 5.3252 -11.6653 -0.0078
16 6 3.5047 -12.7799 -0.0082
17 7 2.1909 -12.7217 -0.0070
18 14 4.3662 -14.4373 -0.0096
19 1 5.2157 -14.5547 1.2027
20 1 3.3521 -15.5223 -0.0098
21 1 5.2154 -14.5528 -1.2223
22 6 4.5985 -4.2280 -0.0028
23 6 3.7564 -3.1181 -0.0014
24 16 3.9047 -1.3494 -0.0012
25 1 -0.3634 0.0000 -1.0277
26 1 -0.3633 0.8900 0.5139
27 1 -0.3633 -0.8900 0.5139
28 1 1.4892 2.0973 0.0005
29 1 2.8242 1.3264 0.8899
30 1 2.8241 1.3265 -0.8900
31 1 2.9514 -7.8197 -0.0042
32 1 5.2194 -9.2473 -0.8956
33 1 5.2196 -9.2487 0.8845
34 1 2.9282 -10.1954 0.8848
35 1 2.9273 -10.1944 -0.8952
36 1 1.6692 -13.5394 -0.0072
37 1 5.6747 -4.1374 -0.0033
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273016077.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:00:56
Heat of formation + Delta-G solvation = 34.049592 kcal
Electronic energy + Delta-G solvation = -21135.323601 eV
Core-core repulsion = 17745.100583 eV
Total energy + Delta-G solvation = -3390.223018 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.066 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.06013 -39.24981 -37.59456 -35.17244 -34.68761 -32.86450 -30.13120 -28.96360
-28.63199 -26.76217 -24.89956 -24.06385 -22.56567 -21.21688 -20.79810 -19.23724
-19.12563 -17.22964 -16.68011 -16.34384 -16.16078 -15.94667 -15.40763 -15.08669
-15.01301 -14.48441 -14.39567 -13.93903 -13.76535 -13.29847 -13.22343 -13.15484
-13.10157 -12.53039 -12.28388 -11.97140 -11.77807 -11.22654 -11.04097 -11.01591
-10.65292 -10.34364 -10.00290 -9.96711 -9.92530 -9.79863 -9.55033 -9.26507
-8.60908 -8.38027 -8.15689 -7.85756 -6.08015 -4.11073 -0.01985 0.56671
0.80995 1.37892 1.67585 1.85664 2.38624 2.42900 3.32610 3.36326
3.38825 3.40934 3.57115 4.17553 4.42751 4.52006 4.67519 4.72460
4.83797 4.98729 5.01292 5.07367 5.28899 5.34367 5.37092 5.74597
5.83642 6.06581 6.32306 6.33080 6.44645 6.70554 6.80965 7.33454
7.51028 7.61346 7.87289 7.90581 8.26830 8.49492 8.94359 9.53564
11.03544
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.035188 B = 0.002173 C = 0.002051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 795.524436 B =12883.254383 C =13647.726030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.099 3.901
2 N -0.582 5.582
3 C 0.087 3.913
4 C 0.372 3.628
5 N -0.522 5.522
6 C 0.056 3.944
7 S 0.239 5.761
8 C -0.247 4.247
9 C 0.584 3.416
10 O -0.536 6.536
11 N -0.714 5.714
12 C 0.122 3.878
13 C 0.011 3.989
14 C -0.522 4.522
15 H 0.060 0.940
16 C 0.059 3.941
17 N -0.893 5.893
18 Si 0.898 3.102
19 H -0.276 1.276
20 H -0.287 1.287
21 H -0.276 1.276
22 C 0.000 4.000
23 C -0.242 4.242
24 S 0.095 5.905
25 H 0.057 0.943
26 H 0.073 0.927
27 H 0.081 0.919
28 H 0.092 0.908
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.395 0.605
32 H 0.061 0.939
33 H 0.061 0.939
34 H 0.024 0.976
35 H 0.024 0.976
36 H 0.263 0.737
37 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.711 30.998 0.102 31.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.301 5.301
3 C -0.055 4.055
4 C -0.005 4.005
5 N -0.248 5.248
6 C -0.187 4.187
7 S 0.500 5.500
8 C -0.369 4.369
9 C 0.369 3.631
10 O -0.416 6.416
11 N -0.364 5.364
12 C 0.000 4.000
13 C -0.026 4.026
14 C -0.561 4.561
15 H 0.078 0.922
16 C -0.143 4.143
17 N -0.532 5.532
18 Si 0.726 3.274
19 H -0.201 1.201
20 H -0.213 1.213
21 H -0.201 1.201
22 C -0.035 4.035
23 C -0.371 4.371
24 S 0.342 5.658
25 H 0.075 0.925
26 H 0.092 0.908
27 H 0.100 0.900
28 H 0.111 0.889
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.229 0.771
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.042 0.958
35 H 0.042 0.958
36 H 0.072 0.928
37 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -4.047 30.649 0.110 30.915
hybrid contribution 0.686 -0.704 -0.021 0.984
sum -3.360 29.945 0.089 30.133
Atomic orbital electron populations
1.21799 0.76968 1.03595 1.02208 1.45693 1.06114 1.00882 1.77431
1.21913 0.97563 0.83603 1.02455 1.23688 0.91476 0.88916 0.96378
1.65447 1.36312 0.95288 1.27799 1.23680 0.89861 0.98993 1.06196
1.84275 1.01484 0.91242 1.73001 1.24054 0.97140 0.97849 1.17905
1.16739 0.86774 0.82224 0.77378 1.90832 1.12718 1.86927 1.51096
1.46243 1.10004 1.06741 1.73375 1.21825 0.97052 0.79909 1.01216
1.19344 0.93718 0.91527 0.98013 1.20992 0.93239 0.90275 1.51595
0.92219 1.24998 0.94862 0.99461 0.94974 1.69942 1.04692 1.28398
1.50170 0.86559 0.79166 0.82948 0.78774 1.20111 1.21259 1.20106
1.19462 1.00798 0.87344 0.95926 1.23121 0.96231 0.97082 1.20710
1.84734 1.03717 0.98808 1.78563 0.92487 0.90802 0.90020 0.88940
0.91623 0.91621 0.77119 0.92083 0.92089 0.95807 0.95810 0.92764
0.82739
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.54 10.52 59.85 0.63 1.17 16
2 N -0.58 -4.15 3.36 -190.79 -0.64 -4.79 16
3 C 0.09 0.31 10.05 59.85 0.60 0.91 16
4 C 0.37 3.90 7.88 -88.89 -0.70 3.20 16
5 N -0.52 -6.76 9.78 -11.80 -0.12 -6.88 16
6 C 0.06 0.77 8.05 -16.71 -0.13 0.63 16
7 S 0.24 3.18 22.31 -107.50 -2.40 0.78 16
8 C -0.25 -3.76 6.35 -37.38 -0.24 -4.00 16
9 C 0.58 10.69 7.76 -13.10 -0.10 10.59 16
10 O -0.54 -11.40 16.77 5.11 0.09 -11.31 16
11 N -0.71 -13.19 5.55 -61.78 -0.34 -13.54 16
12 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16
13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16
14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16
15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
17 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16
18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16
19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
22 C 0.00 0.00 9.88 -40.14 -0.40 -0.40 16
23 C -0.24 -3.18 6.95 -39.42 -0.27 -3.45 16
24 S 0.10 0.95 22.61 -107.50 -2.43 -1.48 16
25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
26 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16
27 H 0.08 0.59 7.61 -51.93 -0.40 0.19 16
28 H 0.09 0.10 7.79 -51.93 -0.40 -0.30 16
29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
31 H 0.39 6.53 7.52 -40.82 -0.31 6.22 16
32 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16
33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
34 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16
35 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16
36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
37 H 0.16 2.05 8.00 -52.49 -0.42 1.63 16
LS Contribution 349.13 15.07 5.26 5.26
Total: -1.00 -33.53 349.13 -10.49 -44.02
By element:
Atomic # 1 Polarization: 3.25 SS G_CDS: -4.44 Total: -1.18 kcal
Atomic # 6 Polarization: -0.69 SS G_CDS: -1.19 Total: -1.88 kcal
Atomic # 7 Polarization: -50.27 SS G_CDS: -0.36 Total: -50.64 kcal
Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal
Atomic # 16 Polarization: 4.12 SS G_CDS: -4.83 Total: -0.71 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -33.53 -10.49 -44.02 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273016077.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.068 kcal
(2) G-P(sol) polarization free energy of solvation -33.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.050 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds