Wall clock time and date at job start Tue Mar 31 2020 15:00:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46502 * 120.00062 * 2 1
4 4 C 1.37997 * 120.00033 * 180.02562 * 2 1 3
5 5 N 1.28927 * 125.03954 * 359.69205 * 4 2 1
6 6 C 1.34301 * 118.09258 * 179.77518 * 5 4 2
7 7 S 1.77275 * 137.06512 * 180.18379 * 6 5 4
8 8 C 1.75333 * 91.53441 * 180.31978 * 7 6 5
9 9 C 1.46125 * 124.98370 * 179.97438 * 8 7 6
10 10 O 1.21783 * 119.99729 * 180.02562 * 9 8 7
11 11 N 1.34769 * 120.00197 * 0.02562 * 9 8 7
12 12 C 1.46499 * 120.00178 * 179.97438 * 11 9 8
13 13 C 1.53004 * 109.47482 * 179.97438 * 12 11 9
14 14 C 1.50697 * 109.47156 * 179.97438 * 13 12 11
15 15 H 1.07995 * 119.99937 * 0.02562 * 14 13 12
16 16 C 1.37884 * 119.99703 * 180.02562 * 14 13 12
17 17 N 1.31507 * 119.99885 * 359.97438 * 16 14 13
18 18 Si 1.86794 * 119.99657 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47258 * 59.99892 * 18 16 14
20 20 H 1.48506 * 109.46847 * 179.97438 * 18 16 14
21 21 H 1.48501 * 109.47289 * 299.99659 * 18 16 14
22 22 C 1.35558 * 110.02857 * 359.97438 * 8 7 6
23 23 C 1.37576 * 113.53152 * 0.50750 * 6 5 4
24 24 S 1.75651 * 125.03917 * 179.97438 * 4 2 1
25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3
26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3
27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3
28 28 H 1.09001 * 109.47274 * 0.02562 * 3 2 1
29 29 H 1.09000 * 109.47166 * 120.00409 * 3 2 1
30 30 H 1.09004 * 109.47230 * 240.00361 * 3 2 1
31 31 H 0.97001 * 119.99911 * 359.97438 * 11 9 8
32 32 H 1.09003 * 109.46832 * 300.00122 * 12 11 9
33 33 H 1.09006 * 109.46883 * 60.00045 * 12 11 9
34 34 H 1.08995 * 109.47007 * 300.00785 * 13 12 11
35 35 H 1.09008 * 109.46573 * 59.99782 * 13 12 11
36 36 H 0.96997 * 119.99888 * 180.02562 * 17 16 14
37 37 H 1.07999 * 122.36374 * 180.02562 * 22 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.1550 -1.1951 -0.0005
5 7 1.6109 -2.3639 0.0046
6 6 2.4182 -3.4373 -0.0014
7 16 2.2332 -5.2003 -0.0027
8 6 3.9715 -5.4299 -0.0031
9 6 4.6453 -6.7265 -0.0036
10 8 5.8619 -6.7804 -0.0033
11 7 3.9204 -7.8626 -0.0043
12 6 4.5960 -9.1626 -0.0054
13 6 3.5513 -10.2804 -0.0055
14 6 4.2463 -11.6175 -0.0072
15 1 5.3252 -11.6653 -0.0078
16 6 3.5047 -12.7799 -0.0082
17 7 2.1909 -12.7217 -0.0070
18 14 4.3662 -14.4373 -0.0096
19 1 5.2157 -14.5547 1.2027
20 1 3.3521 -15.5223 -0.0098
21 1 5.2154 -14.5528 -1.2223
22 6 4.5985 -4.2280 -0.0028
23 6 3.7564 -3.1181 -0.0014
24 16 3.9047 -1.3494 -0.0012
25 1 -0.3634 0.0000 -1.0277
26 1 -0.3633 0.8900 0.5139
27 1 -0.3633 -0.8900 0.5139
28 1 1.4892 2.0973 0.0005
29 1 2.8242 1.3264 0.8899
30 1 2.8241 1.3265 -0.8900
31 1 2.9514 -7.8197 -0.0042
32 1 5.2194 -9.2473 -0.8956
33 1 5.2196 -9.2487 0.8845
34 1 2.9282 -10.1954 0.8848
35 1 2.9273 -10.1944 -0.8952
36 1 1.6692 -13.5394 -0.0072
37 1 5.6747 -4.1374 -0.0033
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273016077.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:00:56
Heat of formation + Delta-G solvation = 12.253799 kcal
Electronic energy + Delta-G solvation = -21136.268738 eV
Core-core repulsion = 17745.100583 eV
Total energy + Delta-G solvation = -3391.168155 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.066 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.08121 -40.58492 -38.34703 -36.71105 -35.83462 -34.86034 -31.89321 -29.90305
-29.24636 -27.74475 -26.58710 -25.01057 -23.80670 -22.75119 -22.11261 -20.41342
-20.05100 -18.60401 -18.15082 -17.58338 -17.03197 -16.86969 -16.56751 -16.55422
-16.35765 -16.06686 -15.32072 -15.13961 -14.80724 -14.73235 -14.51483 -14.25235
-13.56150 -13.51483 -13.24930 -13.02468 -12.90645 -12.85995 -12.72698 -12.54164
-12.25249 -12.06312 -11.69977 -11.51491 -11.16752 -10.89173 -10.79656 -10.66180
-10.59495 -10.13832 -9.09028 -8.68688 -8.22939 -6.33667 -1.03135 -0.33588
-0.07516 0.38858 0.60970 0.86964 1.42840 1.45482 1.48798 1.53310
1.76975 2.02760 2.09781 2.44083 3.11698 3.41534 3.69701 3.77718
4.19108 4.29736 4.39930 4.41661 4.43012 4.47512 4.67536 4.71508
4.78362 4.81095 4.83419 4.93883 5.15553 5.45003 5.53561 5.56397
5.77643 5.78676 6.14884 6.40611 6.50908 6.78811 7.02307 7.35352
8.88841
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.035188 B = 0.002173 C = 0.002051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 795.524436 B =12883.254383 C =13647.726030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.572 5.572
3 C 0.075 3.925
4 C 0.370 3.630
5 N -0.554 5.554
6 C 0.060 3.940
7 S 0.250 5.750
8 C -0.278 4.278
9 C 0.590 3.410
10 O -0.572 6.572
11 N -0.713 5.713
12 C 0.140 3.860
13 C 0.021 3.979
14 C -0.547 4.547
15 H 0.062 0.938
16 C 0.006 3.994
17 N -0.926 5.926
18 Si 0.967 3.033
19 H -0.268 1.268
20 H -0.281 1.281
21 H -0.268 1.268
22 C 0.017 3.983
23 C -0.275 4.275
24 S 0.146 5.854
25 H 0.062 0.938
26 H 0.108 0.892
27 H 0.062 0.938
28 H 0.124 0.876
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.404 0.596
32 H 0.055 0.945
33 H 0.055 0.945
34 H 0.009 0.991
35 H 0.009 0.991
36 H 0.266 0.734
37 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.838 33.468 0.115 33.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.289 5.289
3 C -0.066 4.066
4 C -0.007 4.007
5 N -0.283 5.283
6 C -0.185 4.185
7 S 0.510 5.490
8 C -0.400 4.400
9 C 0.377 3.623
10 O -0.454 6.454
11 N -0.362 5.362
12 C 0.017 3.983
13 C -0.017 4.017
14 C -0.585 4.585
15 H 0.080 0.920
16 C -0.193 4.193
17 N -0.566 5.566
18 Si 0.791 3.209
19 H -0.193 1.193
20 H -0.207 1.207
21 H -0.193 1.193
22 C -0.018 4.018
23 C -0.404 4.404
24 S 0.393 5.607
25 H 0.081 0.919
26 H 0.127 0.873
27 H 0.080 0.920
28 H 0.142 0.858
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.240 0.760
32 H 0.073 0.927
33 H 0.073 0.927
34 H 0.027 0.973
35 H 0.027 0.973
36 H 0.075 0.925
37 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -4.194 33.204 0.123 33.468
hybrid contribution 0.606 -1.135 -0.027 1.287
sum -3.588 32.070 0.096 32.270
Atomic orbital electron populations
1.21982 0.75939 1.04377 1.02819 1.46241 1.07086 1.00814 1.74730
1.22292 0.98560 0.82655 1.03118 1.24129 0.92363 0.89437 0.94785
1.65509 1.36700 0.95781 1.30277 1.23846 0.90416 0.99298 1.04966
1.84103 0.99832 0.91721 1.73335 1.23596 0.98324 0.96555 1.21572
1.17001 0.86341 0.82909 0.76041 1.90798 1.14197 1.87589 1.52784
1.46042 1.10476 1.05957 1.73773 1.21369 0.95854 0.80432 1.00629
1.19160 0.93924 0.92121 0.96467 1.21418 0.93663 0.91709 1.51703
0.91999 1.25898 0.95573 1.03426 0.94411 1.70055 1.06105 1.29551
1.50852 0.85472 0.78157 0.78102 0.79149 1.19302 1.20663 1.19290
1.19557 1.01089 0.87368 0.93827 1.23316 0.95902 0.99013 1.22120
1.84482 1.02531 0.95675 1.78026 0.91921 0.87325 0.91958 0.85752
0.90844 0.90931 0.76030 0.92671 0.92677 0.97264 0.97272 0.92533
0.82395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.76 10.52 127.77 1.34 2.10 16
2 N -0.57 -6.46 3.36 -757.52 -2.55 -9.01 16
3 C 0.07 0.24 10.05 127.77 1.28 1.53 16
4 C 0.37 7.01 7.88 179.74 1.42 8.42 16
5 N -0.55 -13.81 9.78 -191.25 -1.87 -15.68 16
6 C 0.06 1.61 8.05 84.16 0.68 2.29 16
7 S 0.25 6.74 22.31 -56.49 -1.26 5.48 16
8 C -0.28 -8.66 6.35 23.70 0.15 -8.51 16
9 C 0.59 22.22 7.76 86.29 0.67 22.89 16
10 O -0.57 -24.98 16.77 -4.61 -0.08 -25.05 16
11 N -0.71 -27.19 5.55 -467.57 -2.59 -29.78 16
12 C 0.14 6.22 5.61 86.38 0.48 6.71 16
13 C 0.02 1.07 5.09 29.85 0.15 1.22 16
14 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16
15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16
16 C 0.01 0.33 5.46 84.66 0.46 0.79 16
17 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16
18 Si 0.97 44.02 29.54 68.60 2.03 46.04 16
19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
22 C 0.02 0.49 9.88 21.91 0.22 0.70 16
23 C -0.27 -7.03 6.95 22.37 0.16 -6.87 16
24 S 0.15 2.61 22.61 -56.49 -1.28 1.34 16
25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
26 H 0.11 0.16 7.92 -2.39 -0.02 0.14 16
27 H 0.06 0.80 7.61 -2.38 -0.02 0.78 16
28 H 0.12 -0.33 7.79 -2.39 -0.02 -0.35 16
29 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16
30 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16
31 H 0.40 13.86 7.52 -92.71 -0.70 13.16 16
32 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16
33 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16
34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16
36 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16
37 H 0.16 4.20 8.00 -2.91 -0.02 4.18 16
Total: -1.00 -72.87 349.13 0.35 -72.52
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: 0.42 Total: 8.11 kcal
Atomic # 6 Polarization: -6.57 SS G_CDS: 7.25 Total: 0.67 kcal
Atomic # 7 Polarization: -102.38 SS G_CDS: -6.73 Total: -109.11 kcal
Atomic # 8 Polarization: -24.98 SS G_CDS: -0.08 Total: -25.05 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal
Atomic # 16 Polarization: 9.35 SS G_CDS: -2.54 Total: 6.81 kcal
Total: -72.87 0.35 -72.52 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273016077.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.777 kcal
(2) G-P(sol) polarization free energy of solvation -72.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds