Wall clock time and date at job start Tue Mar 31 2020 14:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.50694 * 109.47074 * 120.00387 * 2 1 3 5 5 N 1.29028 * 124.91734 * 120.28129 * 4 2 1 6 6 C 1.31782 * 117.12806 * 180.22695 * 5 4 2 7 7 C 1.50694 * 122.75002 * 179.75213 * 6 5 4 8 8 C 1.50699 * 109.47188 * 264.72735 * 7 6 5 9 9 N 1.29946 * 126.29335 * 270.02919 * 8 7 6 10 10 O 1.21300 * 110.25269 * 179.67956 * 9 8 7 11 11 C 1.33643 * 109.81038 * 0.47090 * 10 9 8 12 12 C 1.50698 * 126.55187 * 179.79880 * 11 10 9 13 13 S 1.80998 * 109.47116 * 269.68760 * 12 11 10 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47043 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47048 * 119.99960 * 18 16 14 21 21 H 1.48504 * 109.47465 * 240.00413 * 18 16 14 22 22 N 1.31131 * 106.89729 * 359.53556 * 11 10 9 23 23 C 1.33641 * 114.49794 * 359.47728 * 6 5 4 24 24 S 1.70972 * 124.91820 * 299.97326 * 4 2 1 25 25 H 1.08992 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46890 * 299.99674 * 1 2 3 27 27 H 1.09003 * 109.47271 * 59.99507 * 1 2 3 28 28 H 1.08999 * 109.46601 * 240.00654 * 2 1 3 29 29 H 1.09001 * 109.46876 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47439 * 300.00665 * 3 2 1 31 31 H 1.09005 * 109.47049 * 60.00423 * 3 2 1 32 32 H 1.09006 * 109.47162 * 144.73557 * 7 6 5 33 33 H 1.08997 * 109.47514 * 24.73291 * 7 6 5 34 34 H 1.09001 * 109.47434 * 149.68522 * 12 11 10 35 35 H 1.08999 * 109.47072 * 29.69002 * 12 11 10 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.08000 * 126.03819 * 180.26439 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7815 -1.7609 1.2225 6 6 3.1280 -2.2607 2.3916 7 6 3.9940 -3.4861 2.5301 8 6 3.1202 -4.7022 2.6994 9 7 2.6929 -5.1917 3.8247 10 8 2.0058 -6.1707 3.6229 11 6 1.9355 -6.4119 2.3103 12 6 1.1858 -7.5362 1.6432 13 16 2.2753 -8.9717 1.4752 14 6 1.1744 -10.1011 0.6898 15 1 0.1624 -9.7996 0.4633 16 6 1.6096 -11.3762 0.3564 17 7 2.8446 -11.7420 0.6274 18 14 0.4422 -12.5739 -0.4756 19 1 -0.8791 -11.9241 -0.6684 20 1 0.9963 -12.9690 -1.7955 21 1 0.2815 -13.7805 0.3751 22 7 2.6389 -5.4800 1.7133 23 6 2.6533 -1.5882 3.4444 24 16 1.6982 -0.2369 2.8389 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.6394 -3.3784 3.4019 33 1 4.6070 -3.6008 1.6361 34 1 0.8526 -7.2154 0.6562 35 1 0.3206 -7.8056 2.2489 36 1 3.1488 -12.6332 0.3948 37 1 2.8246 -1.8303 4.4829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273911953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:23 Heat of formation + Delta-G solvation = 95.475983 kcal Electronic energy + Delta-G solvation = -21450.484643 eV Core-core repulsion = 18062.925273 eV Total energy + Delta-G solvation = -3387.559370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.23568 -40.21578 -36.34865 -35.52549 -33.56795 -32.55912 -31.24438 -28.56779 -28.15250 -27.60283 -25.63036 -25.29635 -23.34373 -21.81998 -20.92474 -19.96988 -18.01070 -17.96337 -17.55374 -16.93903 -16.02234 -15.31796 -14.91261 -14.81147 -14.66686 -14.32112 -14.28464 -14.00619 -13.42288 -13.24283 -12.99913 -12.89156 -12.72258 -12.54578 -12.04283 -11.95197 -11.73381 -11.61484 -11.35094 -11.22884 -11.13565 -11.13305 -10.86390 -10.66243 -10.21704 -9.82975 -9.61951 -9.40756 -9.18944 -8.99144 -8.53364 -6.72928 -6.35460 -4.09755 0.46256 1.10605 1.36144 1.51064 2.32480 2.59961 3.06474 3.16752 3.22279 3.26654 3.43472 3.65760 3.93820 4.07695 4.26238 4.44070 4.61932 4.67682 4.88267 4.98897 5.02326 5.11409 5.16808 5.17716 5.32901 5.35353 5.37669 5.43401 5.56405 5.63657 5.75592 5.80504 5.82317 5.84101 6.00157 6.16273 6.31124 7.49297 7.55223 8.23656 8.46848 9.10666 10.72613 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002452 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.291770 B =11415.868483 C =12199.930649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.456 5.456 6 C 0.075 3.925 7 C 0.049 3.951 8 C 0.171 3.829 9 N -0.390 5.390 10 O 0.077 5.923 11 C 0.226 3.774 12 C -0.042 4.042 13 S -0.081 6.081 14 C -0.525 4.525 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.925 3.075 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.471 5.471 23 C -0.248 4.248 24 S 0.117 5.883 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.270 0.730 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 25.302 2.734 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.220 4.220 5 N -0.170 5.170 6 C -0.058 4.058 7 C 0.008 3.992 8 C -0.102 4.102 9 N -0.100 5.100 10 O 0.019 5.981 11 C 0.006 3.994 12 C -0.191 4.191 13 S 0.144 5.856 14 C -0.673 4.673 15 H 0.099 0.901 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.751 3.249 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.204 1.204 22 N -0.205 5.205 23 C -0.387 4.387 24 S 0.373 5.627 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.462 26.191 3.434 26.455 hybrid contribution -1.424 -1.682 -0.700 2.313 sum -2.886 24.509 2.734 24.829 Atomic orbital electron populations 1.21932 0.93077 1.02951 1.02654 1.19853 0.96175 0.95379 0.92971 1.21923 1.01813 0.94026 1.02679 1.27124 0.99538 0.96462 0.98878 1.66092 1.12941 1.09767 1.28162 1.19804 1.01099 0.98183 0.86687 1.18298 0.92751 0.82488 1.05712 1.25339 1.01132 0.99358 0.84408 1.74543 1.10851 1.00691 1.23866 1.85277 1.50486 1.34292 1.28058 1.28234 0.94941 0.95917 0.80308 1.21970 1.00935 0.94334 1.01866 1.85194 1.17455 1.03300 1.79617 1.22748 0.99573 0.99319 1.45657 0.90126 1.25030 0.95822 0.97417 0.95299 1.70006 1.15653 1.20104 1.44445 0.86016 0.80128 0.79924 0.78879 1.19391 1.20453 1.20446 1.71965 1.13165 1.05084 1.30309 1.26897 1.06474 1.00707 1.04659 1.83812 1.48543 1.28355 1.02000 0.91843 0.92283 0.91009 0.87820 0.91944 0.91071 0.92272 0.87375 0.86674 0.87152 0.87980 0.92010 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.09 37.16 0.34 -0.72 16 2 C -0.02 -0.18 3.35 -91.77 -0.31 -0.49 16 3 C -0.15 -0.90 9.09 37.16 0.34 -0.56 16 4 C 0.06 0.65 6.03 -13.46 -0.08 0.57 16 5 N -0.46 -6.31 10.53 -8.06 -0.08 -6.39 16 6 C 0.08 0.99 5.98 -84.23 -0.50 0.49 16 7 C 0.05 0.65 6.25 -29.04 -0.18 0.47 16 8 C 0.17 2.93 7.45 -156.37 -1.17 1.76 16 9 N -0.39 -6.91 12.16 30.90 0.38 -6.53 16 10 O 0.08 1.44 11.31 18.10 0.20 1.64 16 11 C 0.23 4.37 7.77 -13.06 -0.10 4.27 16 12 C -0.04 -0.84 6.30 36.00 0.23 -0.61 16 13 S -0.08 -2.06 21.42 -107.50 -2.30 -4.36 16 14 C -0.52 -14.20 9.50 30.94 0.29 -13.91 16 15 H 0.08 2.06 7.80 -52.49 -0.41 1.65 16 16 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -25.07 13.22 55.49 0.73 -24.34 16 18 Si 0.92 20.68 29.55 -169.99 -5.02 15.66 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 N -0.47 -9.17 11.55 -9.87 -0.11 -9.28 16 23 C -0.25 -2.77 11.14 29.12 0.32 -2.45 16 24 S 0.12 1.11 22.53 -107.50 -2.42 -1.31 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.39 7.93 -51.93 -0.41 -0.03 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 7.93 -51.93 -0.41 -0.08 16 32 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.18 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -31.93 354.34 -8.80 -40.74 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.60 Total: -1.91 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.92 Total: -9.25 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.91 Total: -46.55 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -4.72 Total: -5.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -8.80 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273911953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.213 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds