Wall clock time and date at job start Tue Mar 31 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.50694 * 109.47074 * 120.00387 * 2 1 3 5 5 N 1.29028 * 124.91734 * 120.28129 * 4 2 1 6 6 C 1.31782 * 117.12806 * 180.22695 * 5 4 2 7 7 C 1.50694 * 122.75002 * 179.75213 * 6 5 4 8 8 C 1.50699 * 109.47188 * 264.72735 * 7 6 5 9 9 N 1.29946 * 126.29335 * 270.02919 * 8 7 6 10 10 O 1.21300 * 110.25269 * 179.67956 * 9 8 7 11 11 C 1.33643 * 109.81038 * 0.47090 * 10 9 8 12 12 C 1.50698 * 126.55187 * 179.79880 * 11 10 9 13 13 S 1.80998 * 109.47116 * 269.68760 * 12 11 10 14 14 C 1.76199 * 100.00013 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00250 * 0.02562 * 14 13 12 16 16 C 1.38798 * 120.00102 * 179.72368 * 14 13 12 17 17 N 1.31626 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47043 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47048 * 119.99960 * 18 16 14 21 21 H 1.48504 * 109.47465 * 240.00413 * 18 16 14 22 22 N 1.31131 * 106.89729 * 359.53556 * 11 10 9 23 23 C 1.33641 * 114.49794 * 359.47728 * 6 5 4 24 24 S 1.70972 * 124.91820 * 299.97326 * 4 2 1 25 25 H 1.08992 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46890 * 299.99674 * 1 2 3 27 27 H 1.09003 * 109.47271 * 59.99507 * 1 2 3 28 28 H 1.08999 * 109.46601 * 240.00654 * 2 1 3 29 29 H 1.09001 * 109.46876 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47439 * 300.00665 * 3 2 1 31 31 H 1.09005 * 109.47049 * 60.00423 * 3 2 1 32 32 H 1.09006 * 109.47162 * 144.73557 * 7 6 5 33 33 H 1.08997 * 109.47514 * 24.73291 * 7 6 5 34 34 H 1.09001 * 109.47434 * 149.68522 * 12 11 10 35 35 H 1.08999 * 109.47072 * 29.69002 * 12 11 10 36 36 H 0.97004 * 120.00604 * 179.97438 * 17 16 14 37 37 H 1.08000 * 126.03819 * 180.26439 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7815 -1.7609 1.2225 6 6 3.1280 -2.2607 2.3916 7 6 3.9940 -3.4861 2.5301 8 6 3.1202 -4.7022 2.6994 9 7 2.6929 -5.1917 3.8247 10 8 2.0058 -6.1707 3.6229 11 6 1.9355 -6.4119 2.3103 12 6 1.1858 -7.5362 1.6432 13 16 2.2753 -8.9717 1.4752 14 6 1.1744 -10.1011 0.6898 15 1 0.1624 -9.7996 0.4633 16 6 1.6096 -11.3762 0.3564 17 7 2.8446 -11.7420 0.6274 18 14 0.4422 -12.5739 -0.4756 19 1 -0.8791 -11.9241 -0.6684 20 1 0.9963 -12.9690 -1.7955 21 1 0.2815 -13.7805 0.3751 22 7 2.6389 -5.4800 1.7133 23 6 2.6533 -1.5882 3.4444 24 16 1.6982 -0.2369 2.8389 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 4.6394 -3.3784 3.4019 33 1 4.6070 -3.6008 1.6361 34 1 0.8526 -7.2154 0.6562 35 1 0.3206 -7.8056 2.2489 36 1 3.1488 -12.6332 0.3948 37 1 2.8246 -1.8303 4.4829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273911953.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:22 Heat of formation + Delta-G solvation = 75.129374 kcal Electronic energy + Delta-G solvation = -21451.366938 eV Core-core repulsion = 18062.925273 eV Total energy + Delta-G solvation = -3388.441665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.67440 -41.09399 -37.39623 -36.56333 -34.95137 -34.60929 -32.31317 -30.04516 -29.20045 -28.11717 -27.70426 -26.14993 -24.71033 -23.07670 -21.76922 -20.88712 -19.88374 -19.32803 -18.55287 -18.40146 -16.90698 -16.80499 -16.46286 -16.31751 -15.81387 -15.54930 -15.16386 -15.06611 -14.76766 -14.42646 -14.18657 -13.91796 -13.71420 -13.29998 -13.20606 -13.07569 -12.99577 -12.91684 -12.80473 -12.57277 -12.34207 -12.19816 -12.12968 -11.93148 -11.85331 -11.17999 -11.03626 -10.67570 -10.45599 -10.41513 -9.81629 -8.77406 -8.39785 -6.19497 -0.38047 -0.14698 0.31726 0.63591 0.94536 1.37581 1.43187 1.52438 1.59502 1.59896 1.78890 2.21640 2.57796 2.92754 2.94384 2.97627 3.24153 3.69215 3.80402 3.95508 4.04316 4.10281 4.14523 4.23251 4.32056 4.44265 4.47977 4.64264 4.68630 4.71129 4.84551 4.86932 4.89385 4.99011 5.11855 5.25261 5.29213 5.41911 6.17852 6.70650 7.01174 7.03192 8.70011 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002452 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.291770 B =11415.868483 C =12199.930649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.025 4.025 3 C -0.141 4.141 4 C 0.046 3.954 5 N -0.496 5.496 6 C 0.053 3.947 7 C 0.049 3.951 8 C 0.178 3.822 9 N -0.391 5.391 10 O 0.070 5.930 11 C 0.220 3.780 12 C -0.018 4.018 13 S -0.147 6.147 14 C -0.537 4.537 15 H 0.090 0.910 16 C 0.017 3.983 17 N -0.909 5.909 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.273 1.273 22 N -0.491 5.491 23 C -0.255 4.255 24 S 0.172 5.828 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.273 0.727 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 26.949 2.775 27.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.232 4.232 5 N -0.210 5.210 6 C -0.080 4.080 7 C 0.008 3.992 8 C -0.096 4.096 9 N -0.102 5.102 10 O 0.014 5.986 11 C 0.000 4.000 12 C -0.167 4.167 13 S 0.079 5.921 14 C -0.684 4.684 15 H 0.108 0.892 16 C -0.188 4.188 17 N -0.546 5.546 18 Si 0.821 3.179 19 H -0.180 1.180 20 H -0.201 1.201 21 H -0.199 1.199 22 N -0.226 5.226 23 C -0.394 4.394 24 S 0.428 5.572 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.012 27.852 3.489 28.231 hybrid contribution -0.940 -2.012 -0.664 2.318 sum -3.952 25.840 2.825 26.292 Atomic orbital electron populations 1.21930 0.92095 1.02152 1.04111 1.20003 0.96903 0.96302 0.91496 1.21907 1.01387 0.92584 1.04029 1.27632 0.98826 0.96013 1.00763 1.66093 1.14583 1.11302 1.29054 1.19775 1.02325 0.98638 0.87262 1.18497 0.92516 0.81329 1.06869 1.25974 1.00488 0.99613 0.83519 1.74533 1.11054 1.00605 1.24014 1.85267 1.50856 1.34753 1.27681 1.28069 0.95288 0.95988 0.80666 1.21758 1.00095 0.91875 1.02970 1.85238 1.20478 1.06463 1.79872 1.23120 1.00008 0.99807 1.45485 0.89189 1.26094 0.97495 0.99384 0.95823 1.70145 1.17763 1.20774 1.45869 0.84882 0.78140 0.77257 0.77576 1.17978 1.20079 1.19863 1.71979 1.13457 1.05694 1.31451 1.27191 1.06042 1.01047 1.05127 1.83561 1.46940 1.26617 1.00034 0.93714 0.91416 0.88991 0.88996 0.92608 0.89196 0.91442 0.84672 0.86924 0.86326 0.85731 0.91801 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.09 71.98 0.65 -1.19 16 2 C -0.02 -0.39 3.35 -11.54 -0.04 -0.43 16 3 C -0.14 -1.46 9.09 71.98 0.65 -0.81 16 4 C 0.05 0.97 6.03 88.52 0.53 1.51 16 5 N -0.50 -13.59 10.53 -179.42 -1.89 -15.48 16 6 C 0.05 1.35 5.98 41.52 0.25 1.60 16 7 C 0.05 1.27 6.25 29.10 0.18 1.46 16 8 C 0.18 6.01 7.45 138.46 1.03 7.04 16 9 N -0.39 -13.63 12.16 -60.32 -0.73 -14.36 16 10 O 0.07 2.60 11.31 74.84 0.85 3.45 16 11 C 0.22 8.49 7.77 88.38 0.69 9.18 16 12 C -0.02 -0.70 6.30 71.24 0.45 -0.25 16 13 S -0.15 -7.55 21.42 -56.49 -1.21 -8.76 16 14 C -0.54 -29.04 9.50 67.95 0.65 -28.39 16 15 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 16 C 0.02 0.94 5.49 84.86 0.47 1.41 16 17 N -0.91 -53.34 13.22 21.65 0.29 -53.06 16 18 Si 1.00 42.05 29.55 68.60 2.03 44.08 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 N -0.49 -19.14 11.55 -303.19 -3.50 -22.64 16 23 C -0.25 -5.29 11.14 66.78 0.74 -4.54 16 24 S 0.17 2.93 22.53 -56.49 -1.27 1.66 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.73 7.93 -2.38 -0.02 0.71 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 7.93 -2.38 -0.02 0.57 16 32 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 35 H 0.12 4.29 8.14 -2.40 -0.02 4.27 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -69.24 354.34 1.90 -67.34 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.09 Total: 11.21 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 6.26 Total: -13.43 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -5.84 Total: -105.54 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.85 Total: 3.45 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -2.48 Total: -7.11 kcal Total: -69.24 1.90 -67.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273911953.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.468 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds