Wall clock time and date at job start Tue Mar 31 2020 14:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09000 * 108.60581 * 34.99382 * 14 13 11 16 16 C 1.51869 * 108.65472 * 153.02429 * 14 13 11 17 17 C 1.53541 * 108.97048 * 181.32091 * 16 14 13 18 18 S 1.81618 * 107.26622 * 287.29851 * 17 16 14 19 19 C 1.76458 * 102.60755 * 46.45821 * 18 17 16 20 20 C 1.39627 * 117.70202 * 167.17202 * 19 18 17 21 21 C 1.37269 * 120.75744 * 179.21051 * 20 19 18 22 22 C 1.38440 * 119.45833 * 0.28205 * 21 20 19 23 23 Cl 1.73595 * 120.00937 * 180.02562 * 22 21 20 24 24 C 1.37855 * 119.97829 * 0.02562 * 22 21 20 25 25 C 1.38020 * 122.25533 * 346.95940 * 19 18 17 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.55035 * 301.16444 * 16 14 13 33 33 H 1.09000 * 109.55615 * 61.37010 * 16 14 13 34 34 H 1.08991 * 109.89950 * 46.74114 * 17 16 14 35 35 H 1.09001 * 109.89199 * 167.86402 * 17 16 14 36 36 H 1.07995 * 119.67225 * 359.55868 * 20 19 18 37 37 H 1.08002 * 120.28897 * 180.02562 * 21 20 19 38 38 H 1.08010 * 119.46753 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0019 15 1 0.5268 -7.2814 -0.5910 16 6 2.3013 -8.4651 -0.6502 17 6 1.5273 -9.7908 -0.6838 18 16 1.4767 -10.4288 1.0158 19 6 1.0157 -9.0036 1.9486 20 6 0.6173 -9.1957 3.2730 21 6 0.2611 -8.1293 4.0606 22 6 0.2928 -6.8508 3.5305 23 17 -0.1542 -5.4919 4.5139 24 6 0.6794 -6.6572 2.2215 25 6 1.0433 -7.7320 1.4129 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 3.1358 -6.1343 0.0015 32 1 2.5479 -8.1607 -1.6674 33 1 3.2183 -8.5908 -0.0745 34 1 0.5137 -9.6195 -1.0461 35 1 2.0386 -10.5024 -1.3321 36 1 0.5943 -10.1937 3.6850 37 1 -0.0455 -8.2865 5.0842 38 1 0.7007 -5.6563 1.8163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290981229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:18 Heat of formation + Delta-G solvation = -25.877287 kcal Electronic energy + Delta-G solvation = -22638.101018 eV Core-core repulsion = 19210.942918 eV Total energy + Delta-G solvation = -3427.158100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53562 -38.75391 -36.75957 -35.99670 -33.50452 -32.96328 -31.30526 -30.71470 -30.69767 -27.02625 -25.22876 -23.50964 -22.96865 -21.84313 -20.83402 -19.73305 -18.11685 -17.02445 -16.61742 -16.43957 -16.00796 -15.59246 -15.19836 -15.13960 -14.44842 -14.08058 -13.75584 -13.68618 -13.59282 -13.18670 -13.11643 -12.89699 -12.29456 -12.22041 -12.05733 -11.77577 -11.45175 -11.20676 -11.17754 -10.93994 -10.83186 -10.62214 -10.37204 -10.00166 -9.73684 -9.56068 -9.30707 -9.15990 -9.06625 -8.95229 -8.33966 -7.62138 -5.97808 -4.02410 0.82845 1.10555 1.25715 2.01525 2.21576 3.02696 3.17362 3.32203 3.38659 3.41020 3.49079 4.19356 4.34660 4.44833 4.48811 4.67374 4.83497 4.91727 5.03055 5.18138 5.23653 5.37371 5.37980 5.45101 5.50823 5.70119 5.76462 5.91377 6.05524 6.13776 6.14696 6.19039 6.50962 6.57158 6.81793 7.68302 7.72006 7.81805 8.03844 8.34658 8.58674 9.05476 9.61385 11.13002 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.003510 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.654163 B = 7975.263375 C = 9444.416442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.525 6.525 13 N -0.738 5.738 14 C 0.181 3.819 15 H 0.102 0.898 16 C -0.128 4.128 17 C -0.102 4.102 18 S -0.120 6.120 19 C -0.071 4.071 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.038 4.038 23 Cl -0.061 7.061 24 C -0.083 4.083 25 C -0.085 4.085 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -22.954 3.013 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.299 3.701 12 O -0.400 6.400 13 N -0.391 5.391 14 C 0.076 3.924 15 H 0.119 0.881 16 C -0.168 4.168 17 C -0.250 4.250 18 S 0.122 5.878 19 C -0.184 4.184 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.067 4.067 23 Cl -0.032 7.032 24 C -0.104 4.104 25 C -0.092 4.092 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.209 -23.870 3.349 24.468 hybrid contribution 0.525 2.318 -0.218 2.387 sum 4.735 -21.551 3.131 22.286 Atomic orbital electron populations 1.69990 1.06040 1.26616 1.50047 1.25010 0.94810 0.99202 0.95251 0.86606 0.79816 0.83561 0.78064 1.20673 1.21206 1.19866 1.21193 0.92907 0.90956 1.51573 0.92615 1.18905 0.93103 0.89312 0.98688 1.21921 1.00853 0.91560 1.02755 1.21702 0.88870 0.85750 0.73801 1.90708 1.14269 1.87439 1.47610 1.46359 1.10212 1.04657 1.77909 1.19365 0.96928 0.84576 0.91573 0.88058 1.21859 0.98911 0.92952 1.03036 1.23748 1.05066 1.00296 0.95925 1.85460 1.86530 1.13422 1.02421 1.21320 1.04293 0.95210 0.97623 1.20641 1.00126 0.99179 0.91987 1.20840 0.99982 0.90403 1.00403 1.20891 1.03665 0.89099 0.93010 1.98399 1.91060 1.44058 1.69684 1.21801 0.95492 1.01505 0.91563 1.19916 1.01399 0.91404 0.96500 0.92930 0.95795 0.95718 0.89974 0.90025 0.76399 0.88686 0.89515 0.88488 0.86372 0.84772 0.84464 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 11 C 0.51 9.06 5.99 -10.98 -0.07 8.99 16 12 O -0.52 -11.45 13.84 5.56 0.08 -11.38 16 13 N -0.74 -9.46 4.71 -55.81 -0.26 -9.72 16 14 C 0.18 2.14 2.36 -69.98 -0.17 1.98 16 15 H 0.10 1.39 7.52 -51.93 -0.39 1.00 16 16 C -0.13 -1.01 5.24 -27.03 -0.14 -1.16 16 17 C -0.10 -0.73 6.53 37.44 0.24 -0.49 16 18 S -0.12 -1.12 21.99 -107.50 -2.36 -3.49 16 19 C -0.07 -0.84 6.04 -39.14 -0.24 -1.07 16 20 C -0.10 -1.06 9.62 -39.42 -0.38 -1.44 16 21 C -0.10 -1.12 9.83 -39.86 -0.39 -1.51 16 22 C -0.04 -0.55 6.31 -39.65 -0.25 -0.80 16 23 Cl -0.06 -0.92 28.95 -51.86 -1.50 -2.42 16 24 C -0.08 -1.31 8.55 -39.31 -0.34 -1.64 16 25 C -0.08 -1.12 5.63 -104.61 -0.59 -1.71 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.40 3.97 8.59 -40.82 -0.35 3.62 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.13 1.16 8.05 -52.49 -0.42 0.74 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 2.82 4.03 -52.48 -0.21 2.61 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -33.25 341.38 -10.90 -44.14 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.71 Total: 1.78 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.00 Total: -14.14 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.47 Total: -36.17 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.36 Total: -3.49 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.25 -10.90 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290981229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.268 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds