Wall clock time and date at job start Tue Mar 31 2020 14:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47258 * 300.00098 * 3 2 1 6 6 H 1.48498 * 109.47036 * 59.99967 * 3 2 1 7 7 C 1.38955 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99867 * 198.21295 * 7 2 1 9 9 N 1.37092 * 119.99831 * 18.21860 * 7 2 1 10 10 C 1.34779 * 120.00323 * 44.28725 * 9 7 2 11 11 O 1.21292 * 119.99595 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00363 * 180.02562 * 10 9 7 13 13 S 1.81397 * 109.47283 * 179.97438 * 12 10 9 14 14 C 1.81398 * 103.00168 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47487 * 179.97438 * 14 13 12 16 16 C 1.38241 * 119.98496 * 269.72898 * 15 14 13 17 17 C 1.38216 * 120.00951 * 179.72491 * 16 15 14 18 18 C 1.38353 * 119.98829 * 0.54452 * 17 16 15 19 19 Cl 1.73599 * 120.01479 * 179.70564 * 18 17 16 20 20 C 1.38358 * 119.97387 * 359.72745 * 18 17 16 21 21 C 1.38210 * 119.98425 * 359.97438 * 20 18 17 22 22 C 1.46500 * 119.99829 * 224.28260 * 9 7 2 23 23 C 1.52992 * 117.49936 * 3.22934 * 22 9 7 24 24 C 1.53001 * 117.50138 * 294.60241 * 22 9 7 25 25 H 0.96997 * 120.00027 * 354.93356 * 1 2 3 26 26 H 1.08995 * 109.47563 * 59.99130 * 12 10 9 27 27 H 1.09004 * 109.46629 * 299.99505 * 12 10 9 28 28 H 1.08999 * 109.46840 * 59.99643 * 14 13 12 29 29 H 1.09004 * 109.47090 * 300.00266 * 14 13 12 30 30 H 1.07997 * 119.99393 * 359.97438 * 16 15 14 31 31 H 1.08000 * 120.00776 * 180.27092 * 17 16 15 32 32 H 1.07994 * 120.00490 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.99590 * 179.97438 * 21 20 18 34 34 H 1.09008 * 115.54910 * 148.93598 * 22 9 7 35 35 H 1.08996 * 117.50241 * 359.97438 * 23 22 9 36 36 H 1.09001 * 117.50225 * 145.02247 * 23 22 9 37 37 H 1.09002 * 117.49933 * 214.98007 * 24 22 9 38 38 H 1.08996 * 117.49276 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0484 -1.2266 0.2929 9 7 1.3750 -2.3610 -0.3701 10 6 0.5786 -2.3749 -1.4574 11 8 0.4224 -1.3630 -2.1076 12 6 -0.1187 -3.6473 -1.8645 13 16 -1.1091 -3.3442 -3.3537 14 6 -1.8576 -4.9635 -3.6826 15 6 -2.7261 -4.8754 -4.9109 16 6 -4.0632 -4.5461 -4.7894 17 6 -4.8590 -4.4595 -5.9161 18 6 -4.3199 -4.7136 -7.1647 19 17 -5.3206 -4.6125 -8.5797 20 6 -2.9829 -5.0486 -7.2852 21 6 -2.1867 -5.1288 -6.1583 22 6 1.5634 -3.5831 0.4155 23 6 2.4183 -3.4850 1.6805 24 6 2.9644 -4.1975 0.4414 25 1 -0.4850 0.8367 0.0742 26 1 -0.7705 -3.9791 -1.0564 27 1 0.6237 -4.4179 -2.0721 28 1 -2.4655 -5.2629 -2.8288 29 1 -1.0714 -5.7009 -3.8452 30 1 -4.4851 -4.3525 -3.8143 31 1 -5.9026 -4.1980 -5.8216 32 1 -2.5616 -5.2474 -8.2595 33 1 -1.1431 -5.3907 -6.2521 34 1 0.7140 -4.2661 0.4334 35 1 2.8410 -2.5113 1.9280 36 1 2.1315 -4.1034 2.5310 37 1 3.0367 -5.2845 0.4768 38 1 3.7458 -3.6925 -0.1264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298764310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:20 Heat of formation + Delta-G solvation = 23.008649 kcal Electronic energy + Delta-G solvation = -21720.588273 eV Core-core repulsion = 18295.550026 eV Total energy + Delta-G solvation = -3425.038247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.50961 -38.57496 -36.70093 -36.10476 -32.88891 -32.71052 -31.24713 -31.14193 -29.08969 -26.98446 -24.67476 -23.02491 -21.81605 -21.68872 -21.25082 -19.49833 -17.36485 -16.58318 -16.15151 -15.82551 -15.74500 -15.36566 -14.89048 -14.51293 -14.15465 -13.98838 -13.82013 -13.71493 -13.57048 -13.02583 -12.87251 -12.68936 -12.04506 -11.78468 -11.64520 -11.59815 -11.35781 -11.09039 -10.99447 -10.95461 -10.90192 -10.57879 -10.18145 -10.03455 -9.83036 -9.58301 -9.21327 -8.76728 -8.63127 -8.14031 -7.22061 -7.07610 -6.14451 -3.91208 0.78649 1.13052 1.93736 2.05485 2.96995 3.28420 3.38275 3.41155 3.55970 4.00856 4.23716 4.54260 4.54867 4.68694 4.70978 4.79352 4.97151 5.14670 5.21094 5.36277 5.40024 5.48883 5.51580 5.58690 5.65424 5.72206 5.77551 5.82448 6.01695 6.03969 6.04300 6.15789 6.35319 6.37885 6.60135 6.66822 6.87270 7.58635 8.21627 8.98884 9.08069 9.59089 10.19682 10.94295 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.002621 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.265905 B =10678.548510 C =11648.512580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.423 5.423 10 C 0.497 3.503 11 O -0.512 6.512 12 C -0.115 4.115 13 S -0.167 6.167 14 C -0.081 4.081 15 C -0.054 4.054 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.036 4.036 19 Cl -0.077 7.077 20 C -0.110 4.110 21 C -0.091 4.091 22 C 0.072 3.928 23 C -0.172 4.172 24 C -0.207 4.207 25 H 0.265 0.735 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -14.136 -8.055 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.476 4.476 8 H 0.097 0.903 9 N -0.145 5.145 10 C 0.282 3.718 11 O -0.388 6.388 12 C -0.267 4.267 13 S 0.062 5.938 14 C -0.229 4.229 15 C -0.056 4.056 16 C -0.110 4.110 17 C -0.128 4.128 18 C -0.063 4.063 19 Cl -0.048 7.048 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.034 4.034 23 C -0.209 4.209 24 C -0.246 4.246 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.954 -12.497 -9.115 16.959 hybrid contribution 0.403 -0.465 0.851 1.050 sum -6.551 -12.962 -8.264 16.710 Atomic orbital electron populations 1.69825 1.06551 1.27512 1.42352 1.25267 0.94858 0.99471 0.94174 0.86144 0.79771 0.82540 0.77570 1.19562 1.20534 1.21144 1.18875 0.94553 0.83634 1.50554 0.90310 1.42643 1.44103 1.06988 1.20775 1.18926 0.83383 0.87457 0.81987 1.90580 1.61841 1.33646 1.52753 1.23675 1.01272 1.03234 0.98478 1.87814 1.59516 1.11270 1.35212 1.22461 1.01155 1.00948 0.98301 1.19353 0.93677 0.98738 0.93800 1.21057 0.92984 0.98186 0.98819 1.21023 1.00745 1.00538 0.90531 1.20942 0.92269 1.05060 0.88054 1.98364 1.69444 1.96829 1.40172 1.21012 0.91742 1.00491 0.99650 1.21036 1.00041 0.99001 0.91053 1.21708 0.92544 0.91551 0.97601 1.23062 1.04290 1.02557 0.91019 1.23325 0.99672 0.98492 1.03159 0.92486 0.89187 0.89132 0.89343 0.89383 0.84683 0.84843 0.84869 0.84736 0.88205 0.87373 0.89753 0.89792 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.48 11.74 55.50 0.65 -23.83 16 2 C 0.07 2.05 4.38 -17.46 -0.08 1.98 16 3 Si 0.91 21.87 29.59 -169.99 -5.03 16.84 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.35 -9.40 7.92 -14.93 -0.12 -9.52 16 8 H 0.08 2.05 7.26 -52.49 -0.38 1.67 16 9 N -0.42 -10.39 2.83 -107.73 -0.31 -10.70 16 10 C 0.50 12.46 6.99 -10.99 -0.08 12.38 16 11 O -0.51 -15.10 13.62 5.55 0.08 -15.03 16 12 C -0.11 -2.16 5.04 36.00 0.18 -1.98 16 13 S -0.17 -3.03 20.86 -107.50 -2.24 -5.27 16 14 C -0.08 -1.00 6.07 36.00 0.22 -0.78 16 15 C -0.05 -0.64 5.14 -104.62 -0.54 -1.18 16 16 C -0.09 -1.01 9.70 -39.59 -0.38 -1.40 16 17 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 18 C -0.04 -0.39 6.32 -39.49 -0.25 -0.64 16 19 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 20 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 21 C -0.09 -1.00 9.70 -39.59 -0.38 -1.38 16 22 C 0.07 1.39 5.87 -67.93 -0.40 0.99 16 23 C -0.17 -2.98 9.80 -26.73 -0.26 -3.24 16 24 C -0.21 -3.39 10.36 -26.73 -0.28 -3.66 16 25 H 0.27 7.50 8.32 -40.82 -0.34 7.16 16 26 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 27 H 0.09 1.47 8.11 -51.92 -0.42 1.05 16 28 H 0.09 0.97 8.08 -51.92 -0.42 0.55 16 29 H 0.09 0.94 8.09 -51.92 -0.42 0.52 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.10 1.69 6.96 -51.92 -0.36 1.33 16 35 H 0.11 2.09 6.72 -51.93 -0.35 1.75 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -32.92 353.63 -11.00 -43.93 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.84 Total: 2.51 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.14 Total: -11.52 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.35 Total: -34.53 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.24 Total: -5.27 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.92 -11.00 -43.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298764310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.936 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds