Wall clock time and date at job start Tue Mar 31 2020 14:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47228 * 2 1 4 4 C 1.46496 * 120.00332 * 270.00259 * 3 2 1 5 5 C 1.53008 * 109.47283 * 269.99974 * 4 3 2 6 6 C 1.37957 * 119.99942 * 90.00454 * 3 2 1 7 7 N 1.28968 * 125.02975 * 0.03829 * 6 3 2 8 8 C 1.34242 * 118.09547 * 179.97438 * 7 6 3 9 9 S 1.77274 * 137.06350 * 180.02562 * 8 7 6 10 10 C 1.75336 * 91.54400 * 179.97438 * 9 8 7 11 11 C 1.41698 * 124.99045 * 179.97438 * 10 9 8 12 12 O 1.21823 * 120.00155 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99728 * 0.02665 * 11 10 9 14 14 C 1.36893 * 119.99873 * 179.72158 * 13 11 10 15 15 H 1.08002 * 119.99571 * 0.27715 * 14 13 11 16 16 C 1.38950 * 120.00130 * 180.27704 * 14 13 11 17 17 N 1.31434 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 89.99960 * 18 16 14 20 20 H 1.48499 * 109.47352 * 210.00114 * 18 16 14 21 21 H 1.48505 * 109.47119 * 330.00118 * 18 16 14 22 22 C 1.35724 * 110.01970 * 0.26606 * 10 9 8 23 23 C 1.37679 * 113.52562 * 359.97438 * 8 7 6 24 24 S 1.75640 * 125.03656 * 180.02562 * 6 3 2 25 25 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47038 * 299.99804 * 1 2 3 27 27 H 1.09005 * 109.47500 * 59.99465 * 1 2 3 28 28 H 1.09008 * 109.47038 * 240.00196 * 2 1 3 29 29 H 1.09005 * 109.47500 * 120.00535 * 2 1 3 30 30 H 1.09001 * 109.47457 * 29.99718 * 4 3 2 31 31 H 1.09003 * 109.47495 * 149.99765 * 4 3 2 32 32 H 1.08994 * 109.46957 * 299.99949 * 5 4 3 33 33 H 1.08999 * 109.46589 * 59.99667 * 5 4 3 34 34 H 1.08992 * 109.47017 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 36 36 H 0.96999 * 120.00287 * 180.02562 * 17 16 14 37 37 H 1.08004 * 122.37344 * 179.73187 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2483 2.0315 1.1947 7 7 2.0676 1.5179 2.3639 8 6 2.3369 2.2783 3.4369 9 16 2.2767 2.1029 5.1999 10 6 2.8562 3.7417 5.4302 11 6 3.0744 4.3572 6.6877 12 8 3.4796 5.5047 6.7421 13 7 2.8336 3.6730 7.8237 14 6 3.0499 4.2656 9.0386 15 1 3.4092 5.2830 9.0867 16 6 2.8072 3.5583 10.2097 17 7 2.3705 2.3201 10.1511 18 14 3.1016 4.3673 11.8675 19 1 1.8592 5.0471 12.3142 20 1 3.4850 3.3332 12.8619 21 1 4.1948 5.3650 11.7443 22 6 3.0589 4.3362 4.2271 23 6 2.7835 3.5409 3.1177 24 16 2.8309 3.6812 1.3490 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1411 -1.1383 32 1 4.3882 2.2155 -0.9508 33 1 3.8744 0.7623 -1.8408 34 1 3.8889 2.3450 -2.6545 35 1 2.5113 2.7591 7.7805 36 1 2.2007 1.8265 10.9687 37 1 3.4124 5.3527 4.1366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299723893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:51 Heat of formation + Delta-G solvation = 32.519142 kcal Electronic energy + Delta-G solvation = -21826.016562 eV Core-core repulsion = 18435.727179 eV Total energy + Delta-G solvation = -3390.289383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67290 -38.57562 -37.66436 -34.82112 -33.94272 -32.47234 -31.49032 -30.07662 -28.03398 -25.57231 -24.65515 -24.13653 -22.82319 -21.77631 -20.21017 -18.74193 -18.64607 -17.87276 -16.70454 -16.13890 -15.97027 -15.46386 -15.01905 -14.70210 -14.29168 -14.27083 -14.02949 -13.82904 -13.44540 -13.38060 -13.23813 -12.90563 -12.67163 -12.37909 -12.07428 -11.71227 -11.62075 -11.53505 -11.25480 -11.21601 -11.15698 -10.59619 -10.46960 -10.34355 -9.74480 -9.57346 -9.49606 -9.30279 -8.65967 -8.19179 -7.69738 -7.40753 -6.65882 -3.94257 0.46586 1.00899 1.30665 1.87154 2.18162 2.37894 2.71754 2.89604 3.13574 3.18078 3.24239 4.03046 4.19898 4.36772 4.70145 4.73709 4.82173 4.94142 4.97847 5.06032 5.17524 5.18271 5.25526 5.28211 5.45540 5.52826 5.69098 5.79268 5.83468 5.99623 6.09602 6.41118 6.47942 6.58317 6.87698 7.33657 7.78445 7.85175 8.38414 8.95186 9.27833 9.84479 10.50031 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.002790 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.109668 B =10032.262642 C =10778.983502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 N -0.579 5.579 4 C 0.120 3.880 5 C -0.176 4.176 6 C 0.363 3.637 7 N -0.513 5.513 8 C 0.025 3.975 9 S 0.214 5.786 10 C -0.191 4.191 11 C 0.489 3.511 12 O -0.590 6.590 13 N -0.538 5.538 14 C -0.286 4.286 15 H 0.113 0.887 16 C 0.023 3.977 17 N -0.880 5.880 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.044 4.044 23 C -0.217 4.217 24 S 0.070 5.930 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.392 0.608 36 H 0.279 0.721 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -5.824 -22.578 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.004 3.996 3 N -0.299 5.299 4 C -0.003 4.003 5 C -0.234 4.234 6 C -0.014 4.014 7 N -0.238 5.238 8 C -0.216 4.216 9 S 0.474 5.526 10 C -0.314 4.314 11 C 0.278 3.722 12 O -0.479 6.479 13 N -0.171 5.171 14 C -0.417 4.417 15 H 0.131 0.869 16 C -0.182 4.182 17 N -0.519 5.519 18 Si 0.764 3.236 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.080 4.080 23 C -0.347 4.347 24 S 0.316 5.684 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.226 0.774 36 H 0.089 0.911 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.156 -6.196 -22.153 23.104 hybrid contribution 0.161 0.536 0.631 0.843 sum -1.995 -5.661 -21.522 22.343 Atomic orbital electron populations 1.22167 0.95969 1.02169 1.02423 1.21459 0.94287 0.80688 1.03210 1.45926 1.69909 1.13647 1.00449 1.21575 0.97385 0.97333 0.84026 1.22268 0.96564 1.02656 1.01947 1.23588 0.97016 0.91859 0.88891 1.65380 1.27794 1.35346 0.95311 1.23591 1.07199 0.92005 0.98800 1.84309 1.65837 1.11275 0.91151 1.23374 1.11565 0.97845 0.98662 1.15288 0.87407 0.87401 0.82126 1.90692 1.53310 1.17564 1.86289 1.42017 1.55006 1.14816 1.05259 1.19930 1.40107 1.00084 0.81558 0.86931 1.25471 0.96481 0.95618 1.00623 1.69628 1.42312 1.09417 1.30543 0.85715 0.79186 0.78744 0.79925 1.19975 1.20563 1.18983 1.19340 1.00860 1.00425 0.87342 1.23128 1.16275 0.98757 0.96526 1.84537 1.71245 1.12865 0.99749 0.91553 0.91938 0.92810 0.90580 0.89538 0.89403 0.90549 0.91883 0.92029 0.91087 0.77360 0.91098 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.15 0.38 -0.97 16 2 C 0.13 1.08 6.24 -4.05 -0.03 1.06 16 3 N -0.58 -5.74 2.56 -174.95 -0.45 -6.18 16 4 C 0.12 0.81 6.11 -4.04 -0.02 0.78 16 5 C -0.18 -1.07 10.24 37.16 0.38 -0.69 16 6 C 0.36 4.96 7.87 -88.90 -0.70 4.26 16 7 N -0.51 -8.44 9.77 -11.79 -0.12 -8.55 16 8 C 0.03 0.46 8.06 -16.70 -0.13 0.32 16 9 S 0.21 4.02 22.18 -107.50 -2.38 1.63 16 10 C -0.19 -4.12 6.19 -39.16 -0.24 -4.36 16 11 C 0.49 12.49 7.54 -14.94 -0.11 12.38 16 12 O -0.59 -16.77 16.22 5.08 0.08 -16.69 16 13 N -0.54 -14.10 5.26 -13.58 -0.07 -14.17 16 14 C -0.29 -7.89 9.67 -15.03 -0.15 -8.03 16 15 H 0.11 3.20 7.15 -52.49 -0.38 2.82 16 16 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 17 N -0.88 -23.27 13.05 55.50 0.72 -22.55 16 18 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.04 -0.87 9.83 -40.10 -0.39 -1.27 16 23 C -0.22 -3.85 6.95 -39.41 -0.27 -4.12 16 24 S 0.07 0.95 21.97 -107.50 -2.36 -1.41 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.45 8.07 -51.92 -0.42 0.03 16 29 H 0.09 0.89 7.61 -51.93 -0.40 0.50 16 30 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.53 7.05 -51.93 -0.37 0.16 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.39 9.85 6.81 -40.82 -0.28 9.57 16 36 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.15 2.85 7.94 -52.48 -0.42 2.43 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -31.61 346.20 -10.11 -41.72 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.34 Total: 5.91 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.39 Total: -0.15 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.09 Total: -51.45 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.08 Total: -16.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -4.75 Total: 0.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.61 -10.11 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299723893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.237 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds