Wall clock time and date at job start Tue Mar 31 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47228 * 2 1 4 4 C 1.46496 * 120.00332 * 270.00259 * 3 2 1 5 5 C 1.53008 * 109.47283 * 269.99974 * 4 3 2 6 6 C 1.37957 * 119.99942 * 90.00454 * 3 2 1 7 7 N 1.28968 * 125.02975 * 0.03829 * 6 3 2 8 8 C 1.34242 * 118.09547 * 179.97438 * 7 6 3 9 9 S 1.77274 * 137.06350 * 180.02562 * 8 7 6 10 10 C 1.75336 * 91.54400 * 179.97438 * 9 8 7 11 11 C 1.41698 * 124.99045 * 179.97438 * 10 9 8 12 12 O 1.21823 * 120.00155 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99728 * 0.02665 * 11 10 9 14 14 C 1.36893 * 119.99873 * 179.72158 * 13 11 10 15 15 H 1.08002 * 119.99571 * 0.27715 * 14 13 11 16 16 C 1.38950 * 120.00130 * 180.27704 * 14 13 11 17 17 N 1.31434 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46986 * 89.99960 * 18 16 14 20 20 H 1.48499 * 109.47352 * 210.00114 * 18 16 14 21 21 H 1.48505 * 109.47119 * 330.00118 * 18 16 14 22 22 C 1.35724 * 110.01970 * 0.26606 * 10 9 8 23 23 C 1.37679 * 113.52562 * 359.97438 * 8 7 6 24 24 S 1.75640 * 125.03656 * 180.02562 * 6 3 2 25 25 H 1.08996 * 109.47380 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47038 * 299.99804 * 1 2 3 27 27 H 1.09005 * 109.47500 * 59.99465 * 1 2 3 28 28 H 1.09008 * 109.47038 * 240.00196 * 2 1 3 29 29 H 1.09005 * 109.47500 * 120.00535 * 2 1 3 30 30 H 1.09001 * 109.47457 * 29.99718 * 4 3 2 31 31 H 1.09003 * 109.47495 * 149.99765 * 4 3 2 32 32 H 1.08994 * 109.46957 * 299.99949 * 5 4 3 33 33 H 1.08999 * 109.46589 * 59.99667 * 5 4 3 34 34 H 1.08992 * 109.47017 * 179.97438 * 5 4 3 35 35 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 36 36 H 0.96999 * 120.00287 * 180.02562 * 17 16 14 37 37 H 1.08004 * 122.37344 * 179.73187 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2483 2.0315 1.1947 7 7 2.0676 1.5179 2.3639 8 6 2.3369 2.2783 3.4369 9 16 2.2767 2.1029 5.1999 10 6 2.8562 3.7417 5.4302 11 6 3.0744 4.3572 6.6877 12 8 3.4796 5.5047 6.7421 13 7 2.8336 3.6730 7.8237 14 6 3.0499 4.2656 9.0386 15 1 3.4092 5.2830 9.0867 16 6 2.8072 3.5583 10.2097 17 7 2.3705 2.3201 10.1511 18 14 3.1016 4.3673 11.8675 19 1 1.8592 5.0471 12.3142 20 1 3.4850 3.3332 12.8619 21 1 4.1948 5.3650 11.7443 22 6 3.0589 4.3362 4.2271 23 6 2.7835 3.5409 3.1177 24 16 2.8309 3.6812 1.3490 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1411 -1.1383 32 1 4.3882 2.2155 -0.9508 33 1 3.8744 0.7623 -1.8408 34 1 3.8889 2.3450 -2.6545 35 1 2.5113 2.7591 7.7805 36 1 2.2007 1.8265 10.9687 37 1 3.4124 5.3527 4.1366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299723893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:50 Heat of formation + Delta-G solvation = 12.912417 kcal Electronic energy + Delta-G solvation = -21826.866774 eV Core-core repulsion = 18435.727179 eV Total energy + Delta-G solvation = -3391.139595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98233 -40.35808 -38.76984 -36.41877 -35.75112 -33.48350 -33.08611 -31.06431 -29.44221 -27.18262 -26.07604 -24.89352 -23.98879 -23.15187 -21.53654 -20.47807 -19.99466 -19.45884 -18.10960 -17.44123 -17.10359 -16.82435 -16.51217 -16.20576 -15.86539 -15.67929 -15.11971 -14.93129 -14.89903 -14.58382 -14.36437 -14.33224 -13.58649 -13.42990 -13.05958 -12.96904 -12.78644 -12.72880 -12.60400 -12.54742 -12.13577 -12.09032 -11.92508 -11.86342 -11.64460 -10.83397 -10.73785 -10.71106 -10.56216 -10.18505 -9.03976 -8.63831 -8.59841 -6.04040 -0.93810 -0.25821 0.01188 0.46766 0.69868 0.95773 1.41299 1.42519 1.55663 1.58126 1.77683 2.25115 2.29778 3.09226 3.17698 3.51187 3.79178 4.04474 4.11088 4.16098 4.21298 4.39454 4.43722 4.47707 4.55923 4.75796 4.81121 4.89255 4.93676 4.96524 5.03173 5.30459 5.31150 5.35716 5.68369 5.85316 5.90567 6.39921 6.59512 6.94725 7.30365 7.85745 8.57414 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.002790 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.109668 B =10032.262642 C =10778.983502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.563 5.563 4 C 0.108 3.892 5 C -0.173 4.173 6 C 0.373 3.627 7 N -0.546 5.546 8 C 0.049 3.951 9 S 0.225 5.775 10 C -0.245 4.245 11 C 0.497 3.503 12 O -0.628 6.628 13 N -0.550 5.550 14 C -0.335 4.335 15 H 0.091 0.909 16 C -0.010 4.010 17 N -0.909 5.909 18 Si 1.005 2.995 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.010 4.010 23 C -0.264 4.264 24 S 0.135 5.865 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.394 0.606 36 H 0.285 0.715 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -6.968 -26.439 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.281 5.281 4 C -0.013 4.013 5 C -0.231 4.231 6 C -0.004 4.004 7 N -0.274 5.274 8 C -0.195 4.195 9 S 0.485 5.515 10 C -0.368 4.368 11 C 0.287 3.713 12 O -0.519 6.519 13 N -0.184 5.184 14 C -0.464 4.464 15 H 0.109 0.891 16 C -0.212 4.212 17 N -0.548 5.548 18 Si 0.826 3.174 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.046 4.046 23 C -0.393 4.393 24 S 0.381 5.619 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.601 -7.368 -26.094 27.239 hybrid contribution 0.245 0.750 1.159 1.402 sum -2.357 -6.618 -24.935 25.905 Atomic orbital electron populations 1.22113 0.95311 1.03047 1.01658 1.21701 0.94740 0.79687 1.04147 1.46557 1.67157 1.14235 1.00163 1.22001 0.98912 0.97409 0.82964 1.22247 0.95194 1.03310 1.02370 1.24094 0.94490 0.92303 0.89488 1.65483 1.30583 1.35687 0.95607 1.23745 1.04595 0.92192 0.98952 1.84140 1.65836 1.09295 0.92240 1.22887 1.16345 1.00070 0.97464 1.15762 0.85487 0.86833 0.83216 1.90628 1.54589 1.19289 1.87400 1.41956 1.56286 1.14957 1.05222 1.19880 1.43573 0.99990 0.82982 0.89090 1.26299 0.95388 0.96056 1.03461 1.69687 1.43061 1.10321 1.31698 0.84767 0.79070 0.77964 0.75577 1.19151 1.19059 1.19280 1.19460 0.97450 1.00188 0.87539 1.23308 1.18356 0.98620 0.98986 1.84284 1.70369 1.11708 0.95490 0.90013 0.95026 0.91110 0.86776 0.91513 0.85911 0.90399 0.93872 0.91421 0.88838 0.77132 0.90504 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.24 71.98 0.74 -1.31 16 2 C 0.12 1.58 6.24 86.38 0.54 2.12 16 3 N -0.56 -9.00 2.56 -707.41 -1.81 -10.81 16 4 C 0.11 0.93 6.11 86.38 0.53 1.46 16 5 C -0.17 -1.33 10.24 71.98 0.74 -0.59 16 6 C 0.37 9.20 7.87 179.75 1.41 10.61 16 7 N -0.55 -17.14 9.77 -191.23 -1.87 -19.01 16 8 C 0.05 1.75 8.06 84.19 0.68 2.43 16 9 S 0.23 8.70 22.18 -56.49 -1.25 7.44 16 10 C -0.25 -11.04 6.19 22.54 0.14 -10.90 16 11 C 0.50 26.95 7.54 85.10 0.64 27.59 16 12 O -0.63 -37.83 16.22 -4.74 -0.08 -37.91 16 13 N -0.55 -30.72 5.26 -315.04 -1.66 -32.38 16 14 C -0.33 -19.58 9.67 84.07 0.81 -18.77 16 15 H 0.09 5.56 7.15 -2.91 -0.02 5.54 16 16 C -0.01 -0.56 5.50 84.92 0.47 -0.09 16 17 N -0.91 -49.56 13.05 21.67 0.28 -49.28 16 18 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.01 -0.42 9.83 21.93 0.22 -0.20 16 23 C -0.26 -9.16 6.95 22.38 0.16 -9.01 16 24 S 0.13 3.32 21.97 -56.49 -1.24 2.08 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.11 0.72 8.07 -2.38 -0.02 0.70 16 29 H 0.07 1.21 7.61 -2.38 -0.02 1.19 16 30 H 0.12 0.35 8.07 -2.39 -0.02 0.33 16 31 H 0.08 0.71 7.05 -2.39 -0.02 0.69 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.39 21.07 6.81 -92.71 -0.63 20.44 16 36 H 0.29 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.15 5.81 7.94 -2.91 -0.02 5.79 16 Total: -1.00 -73.04 346.20 1.95 -71.08 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.48 Total: 20.79 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 7.07 Total: 3.34 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.06 Total: -111.49 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.08 Total: -37.91 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 12.02 SS G_CDS: -2.49 Total: 9.53 kcal Total: -73.04 1.95 -71.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299723893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.997 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds