Wall clock time and date at job start Tue Mar 31 2020 14:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47055 * 269.99851 * 3 2 1 5 5 H 1.48495 * 109.47273 * 30.00116 * 3 2 1 6 6 H 1.48500 * 109.47175 * 150.00531 * 3 2 1 7 7 C 1.39047 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00171 * 359.97438 * 7 2 1 9 9 N 1.36795 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00206 * 179.97438 * 9 7 2 11 11 O 1.21779 * 119.99535 * 359.97438 * 10 9 7 12 12 C 1.46357 * 120.00117 * 179.97438 * 10 9 7 13 13 C 1.37933 * 125.96323 * 180.02562 * 12 10 9 14 14 C 1.39792 * 106.76429 * 180.22483 * 13 12 10 15 15 C 1.36596 * 107.11243 * 359.60889 * 14 13 12 16 16 C 1.47660 * 125.65400 * 180.14824 * 15 14 13 17 17 C 1.39689 * 120.15138 * 310.31672 * 16 15 14 18 18 C 1.37906 * 119.84272 * 179.97438 * 17 16 15 19 19 C 1.38408 * 120.15472 * 0.02562 * 18 17 16 20 20 C 1.38351 * 120.30645 * 359.97438 * 19 18 17 21 21 C 1.37952 * 120.15773 * 359.73811 * 20 19 18 22 22 C 1.50704 * 120.07839 * 180.27587 * 21 20 19 23 23 F 1.39895 * 109.47234 * 0.26208 * 22 21 20 24 24 F 1.39899 * 109.46736 * 120.26163 * 22 21 20 25 25 F 1.39895 * 109.46911 * 240.25812 * 22 21 20 26 26 O 1.34386 * 108.69506 * 0.39625 * 15 14 13 27 27 H 0.96999 * 119.99759 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99915 * 359.97438 * 9 7 2 29 29 H 1.08002 * 126.61395 * 359.95325 * 13 12 10 30 30 H 1.08004 * 126.44120 * 179.73671 * 14 13 12 31 31 H 1.08002 * 120.07904 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.92725 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.84215 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.91681 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4953 2.0464 -1.4001 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.6999 7 6 2.0090 -1.2042 -0.0005 8 1 1.4690 -2.1395 -0.0005 9 7 3.3769 -1.2042 0.0000 10 6 4.0508 -2.3714 0.0000 11 8 3.4419 -3.4260 0.0000 12 6 5.5144 -2.3714 0.0000 13 6 6.3244 -3.4878 -0.0005 14 6 7.6446 -3.0281 0.0050 15 6 7.5949 -1.6630 -0.0004 16 6 8.7626 -0.7592 -0.0005 17 6 9.7932 -0.9443 0.9241 18 6 10.8810 -0.0968 0.9180 19 6 10.9529 0.9356 -0.0011 20 6 9.9358 1.1247 -0.9196 21 6 8.8445 0.2808 -0.9288 22 6 7.7405 0.4846 -1.9342 23 9 8.0479 1.5796 -2.7487 24 9 7.6118 -0.6627 -2.7243 25 9 6.5371 0.7259 -1.2628 26 8 6.3071 -1.2789 0.0000 27 1 -0.4850 0.8401 0.0004 28 1 3.8619 -0.3641 0.0004 29 1 6.0011 -4.5183 -0.0003 30 1 8.5362 -3.6376 0.0101 31 1 9.7381 -1.7492 1.6421 32 1 11.6788 -0.2389 1.6320 33 1 11.8070 1.5966 -0.0011 34 1 9.9986 1.9320 -1.6343 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356048052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:50 Heat of formation + Delta-G solvation = -159.240669 kcal Electronic energy + Delta-G solvation = -27668.749826 eV Core-core repulsion = 23117.798799 eV Total energy + Delta-G solvation = -4550.951027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.27215 -48.81046 -48.73506 -43.65381 -40.40362 -40.05302 -36.35129 -34.42801 -33.89583 -33.51448 -32.81736 -30.09368 -27.57342 -26.84116 -24.73259 -23.57720 -22.61708 -22.30875 -21.36578 -20.79515 -19.64985 -19.58752 -19.52094 -18.73330 -17.72354 -17.41865 -17.09245 -16.21805 -16.05168 -15.75481 -15.66059 -15.60978 -15.42688 -15.18814 -15.14656 -14.97526 -14.90666 -14.80784 -14.64399 -14.23066 -13.99693 -13.96482 -13.74231 -13.58291 -13.18109 -12.60716 -12.48185 -12.32094 -12.13922 -11.77970 -11.11400 -11.04916 -10.51568 -10.43326 -10.28918 -9.33045 -8.62842 -6.18785 -0.53000 0.00323 0.25711 1.18298 1.21331 1.29510 1.32693 1.49601 1.66703 2.04928 2.13287 2.46049 2.60882 2.66179 2.91018 3.02032 3.25733 3.35146 3.76329 3.87341 3.98552 4.08112 4.26734 4.29460 4.38629 4.59155 4.66399 4.82654 4.87931 5.07719 5.22676 5.30160 5.32154 5.38914 5.69458 5.73364 5.81066 6.35251 6.58888 7.09903 7.57993 8.52723 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.004863 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.367281 B = 5756.274325 C = 6772.479735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.256 1.256 5 H -0.252 1.252 6 H -0.250 1.250 7 C -0.334 4.334 8 H 0.076 0.924 9 N -0.561 5.561 10 C 0.513 3.487 11 O -0.602 6.602 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.161 4.161 15 C 0.001 3.999 16 C 0.006 3.994 17 C -0.090 4.090 18 C -0.074 4.074 19 C -0.099 4.099 20 C -0.078 4.078 21 C -0.183 4.183 22 C 0.493 3.507 23 F -0.174 7.174 24 F -0.185 7.185 25 F -0.185 7.185 26 O -0.165 6.165 27 H 0.288 0.712 28 H 0.388 0.612 29 H 0.168 0.832 30 H 0.200 0.800 31 H 0.161 0.839 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.843 5.763 1.006 31.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.761 3.239 4 H -0.180 1.180 5 H -0.175 1.175 6 H -0.174 1.174 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.197 5.197 10 C 0.302 3.698 11 O -0.490 6.490 12 C -0.118 4.118 13 C -0.158 4.158 14 C -0.180 4.180 15 C -0.051 4.051 16 C 0.006 3.994 17 C -0.108 4.108 18 C -0.091 4.091 19 C -0.117 4.117 20 C -0.096 4.096 21 C -0.185 4.185 22 C 0.439 3.561 23 F -0.156 7.156 24 F -0.166 7.166 25 F -0.167 7.167 26 O -0.062 6.062 27 H 0.098 0.902 28 H 0.223 0.777 29 H 0.186 0.814 30 H 0.217 0.783 31 H 0.179 0.821 32 H 0.197 0.803 33 H 0.194 0.806 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 30.027 5.527 0.973 30.547 hybrid contribution -1.033 0.668 -0.537 1.342 sum 28.994 6.195 0.437 29.651 Atomic orbital electron populations 1.69711 1.07498 1.29941 1.46905 1.25919 0.96397 1.01871 0.95258 0.85697 0.79442 0.78313 0.80465 1.17997 1.17547 1.17377 1.19169 0.80363 0.96016 1.50729 0.90624 1.42043 1.06812 1.07184 1.63662 1.16506 0.83870 0.84297 0.85093 1.90706 1.67777 1.31888 1.58602 1.22532 0.90631 0.85945 1.12741 1.22265 0.92202 0.99164 1.02174 1.22006 0.98280 0.92227 1.05446 1.21224 0.81765 0.94526 1.07563 1.17634 0.91623 0.93107 0.97030 1.21574 0.91955 1.00982 0.96265 1.21831 0.97180 0.92324 0.97792 1.21800 0.98499 0.98234 0.93121 1.21270 0.91440 0.97276 0.99571 1.20169 0.97141 1.01939 0.99215 1.18750 0.82558 0.73846 0.80989 1.93144 1.92815 1.54834 1.74770 1.93203 1.96342 1.50886 1.76206 1.93254 1.49130 1.94100 1.80195 1.84215 1.16694 1.34547 1.70695 0.90194 0.77685 0.81421 0.78331 0.82120 0.80290 0.80640 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.03 13.95 21.68 0.30 -53.73 16 2 C 0.01 0.49 5.50 84.95 0.47 0.96 16 3 Si 0.94 41.91 27.74 68.60 1.90 43.81 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 7 C -0.33 -20.55 10.16 84.11 0.85 -19.69 16 8 H 0.08 5.31 7.38 -2.91 -0.02 5.29 16 9 N -0.56 -30.58 5.08 -310.91 -1.58 -32.16 16 10 C 0.51 27.38 7.73 86.36 0.67 28.05 16 11 O -0.60 -36.12 16.44 -4.60 -0.08 -36.20 16 12 C -0.07 -2.81 7.16 24.31 0.17 -2.64 16 13 C -0.14 -4.73 10.66 22.57 0.24 -4.49 16 14 C -0.16 -4.23 10.68 22.26 0.24 -3.99 16 15 C 0.00 0.02 5.38 24.38 0.13 0.15 16 16 C 0.01 0.15 5.76 -20.10 -0.12 0.03 16 17 C -0.09 -1.19 9.69 22.54 0.22 -0.97 16 18 C -0.07 -0.52 10.03 22.23 0.22 -0.30 16 19 C -0.10 -0.76 10.04 22.34 0.22 -0.53 16 20 C -0.08 -1.13 9.42 22.23 0.21 -0.92 16 21 C -0.18 -4.17 5.40 -19.59 -0.11 -4.27 16 22 C 0.49 14.42 2.86 71.24 0.20 14.62 16 23 F -0.17 -4.52 15.98 44.97 0.72 -3.80 16 24 F -0.18 -6.00 16.53 44.97 0.74 -5.25 16 25 F -0.19 -6.63 14.61 44.97 0.66 -5.98 16 26 O -0.17 -6.39 7.79 -10.03 -0.08 -6.47 16 27 H 0.29 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.39 19.28 5.51 -92.70 -0.51 18.77 16 29 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.15 1.78 7.15 -2.91 -0.02 1.76 16 Total: -1.00 -79.85 317.95 6.84 -73.01 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.62 Total: 20.76 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 3.63 Total: 6.01 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.28 Total: -85.89 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -0.15 Total: -42.67 kcal Atomic # 9 Polarization: -17.15 SS G_CDS: 2.12 Total: -15.03 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.90 Total: 43.81 kcal Total: -79.85 6.84 -73.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356048052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.236 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds