Wall clock time and date at job start Tue Mar 31 2020 15:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99442 * 2 1 4 4 H 1.48505 * 109.46899 * 239.99860 * 3 2 1 5 5 H 1.48496 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00013 * 3 2 1 7 7 C 1.37871 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47301 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47046 * 185.59697 * 10 9 7 12 12 C 1.46836 * 110.99626 * 306.59649 * 11 10 9 13 13 C 1.50166 * 110.25213 * 287.75170 * 12 11 10 14 14 C 1.31476 * 123.06042 * 342.94410 * 13 12 11 15 15 C 1.47809 * 118.66385 * 180.31710 * 14 13 12 16 16 C 1.39567 * 120.12036 * 244.72913 * 15 14 13 17 17 C 1.37940 * 119.88851 * 179.74876 * 16 15 14 18 18 C 1.38460 * 120.14469 * 0.54323 * 17 16 15 19 19 Cl 1.73594 * 119.87575 * 179.72474 * 18 17 16 20 20 C 1.38551 * 120.24523 * 359.70922 * 18 17 16 21 21 Cl 1.73605 * 119.94948 * 179.97438 * 20 18 17 22 22 C 1.38081 * 120.10481 * 0.02562 * 20 18 17 23 23 C 1.50778 * 122.75315 * 0.24942 * 14 13 12 24 24 C 1.47215 * 110.99707 * 183.59168 * 11 10 9 25 25 H 0.96996 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46964 * 59.99341 * 9 7 2 27 27 H 1.09003 * 109.47091 * 300.00037 * 9 7 2 28 28 H 1.08999 * 109.47148 * 65.59250 * 10 9 7 29 29 H 1.09004 * 109.46709 * 305.59283 * 10 9 7 30 30 H 1.09001 * 109.34068 * 47.99569 * 12 11 10 31 31 H 1.09000 * 109.33407 * 167.50943 * 12 11 10 32 32 H 1.07998 * 118.46524 * 162.92765 * 13 12 11 33 33 H 1.07994 * 120.05588 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.92785 * 180.27938 * 17 16 15 35 35 H 1.08005 * 120.07295 * 180.02562 * 22 20 18 36 36 H 1.09000 * 109.68727 * 223.53640 * 23 14 13 37 37 H 1.09000 * 109.40758 * 103.53693 * 23 14 13 38 38 H 1.09001 * 109.62539 * 173.84306 * 24 11 10 39 39 H 1.08995 * 109.63051 * 294.23085 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5160 -4.9300 -0.1345 12 6 0.4664 -5.0444 0.8859 13 6 1.0778 -5.2910 2.2351 14 6 2.3155 -5.7039 2.3970 15 6 2.8160 -5.9224 3.7705 16 6 3.8510 -5.1322 4.2728 17 6 4.3109 -5.3368 5.5571 18 6 3.7556 -6.3313 6.3443 19 17 4.3446 -6.5875 7.9570 20 6 2.7314 -7.1226 5.8497 21 17 2.0412 -8.3677 6.8432 22 6 2.2595 -6.9230 4.5675 23 6 3.2461 -5.9655 1.2400 24 6 2.4340 -6.0779 -0.0528 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8044 -3.6622 0.9363 29 1 2.9362 -3.5494 -0.8352 30 1 -0.1113 -4.1205 0.9147 31 1 -0.1948 -5.8730 0.6321 32 1 0.4726 -5.1210 3.1133 33 1 4.2887 -4.3595 3.6582 34 1 5.1087 -4.7228 5.9479 35 1 1.4608 -7.5398 4.1826 36 1 3.7896 -6.8951 1.4088 37 1 3.9553 -5.1424 1.1523 38 1 1.8610 -7.0051 -0.0456 39 1 3.1073 -6.0702 -0.9099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358056849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:17 Heat of formation + Delta-G solvation = 22.697153 kcal Electronic energy + Delta-G solvation = -22298.401815 eV Core-core repulsion = 18871.306355 eV Total energy + Delta-G solvation = -3427.095461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10138 -38.86318 -36.78809 -36.76538 -34.07135 -32.84791 -31.26295 -30.77868 -30.28536 -28.78255 -25.40588 -23.91885 -23.35620 -22.65827 -21.95013 -20.27711 -17.93264 -17.05604 -16.60205 -16.09041 -16.08213 -15.11902 -14.84729 -14.53867 -14.32419 -14.27813 -14.10064 -13.84570 -13.50682 -12.87262 -12.39309 -12.25230 -12.15377 -12.13056 -11.85162 -11.73208 -11.55605 -11.30041 -11.22262 -11.12052 -11.08765 -10.89987 -10.59826 -10.44834 -9.89012 -9.38636 -9.26237 -9.17337 -9.02228 -8.48037 -8.34727 -7.77248 -6.02372 -4.04619 0.64493 0.85300 1.57893 1.94010 2.19563 3.21020 3.31309 3.36248 3.38054 4.28083 4.38248 4.44679 4.67518 4.83935 4.91152 5.01363 5.08359 5.24889 5.33784 5.37833 5.44195 5.54630 5.64194 5.70187 5.78663 5.88078 5.98591 6.04435 6.12950 6.19961 6.33407 6.39875 6.45458 6.62294 6.87256 6.95426 7.45356 7.52545 7.73259 7.84910 8.03080 8.40449 9.01764 9.59171 11.08989 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.003021 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.368031 B = 9265.910354 C =10342.422804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.055 3.945 11 N -0.529 5.529 12 C 0.071 3.929 13 C -0.138 4.138 14 C -0.111 4.111 15 C -0.015 4.015 16 C -0.090 4.090 17 C -0.096 4.096 18 C -0.038 4.038 19 Cl -0.056 7.056 20 C -0.029 4.029 21 Cl -0.054 7.054 22 C -0.093 4.093 23 C -0.110 4.110 24 C 0.053 3.947 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.017 0.983 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -16.736 11.233 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.071 4.071 11 N -0.250 5.250 12 C -0.057 4.057 13 C -0.158 4.158 14 C -0.111 4.111 15 C -0.016 4.016 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.066 4.066 19 Cl -0.027 7.027 20 C -0.056 4.056 21 Cl -0.025 7.025 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.076 4.076 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.080 -16.750 10.979 20.931 hybrid contribution 0.874 0.911 1.270 1.790 sum 6.954 -15.839 12.249 21.196 Atomic orbital electron populations 1.69944 1.06005 1.26729 1.50575 1.24974 0.94821 0.99131 0.95278 0.86680 0.79618 0.83237 0.78595 1.20208 1.21266 1.20317 1.21124 0.92908 0.91013 1.50970 0.92888 1.19163 0.94053 0.90454 0.97544 1.22411 0.97488 0.88292 0.98927 1.62811 1.13163 1.02910 1.46165 1.21304 0.95107 1.03503 0.85807 1.23400 0.95485 0.96245 1.00683 1.19595 0.95595 1.04644 0.91272 1.19105 0.94693 0.93903 0.93899 1.21440 0.95759 0.98954 0.94725 1.21002 1.00313 0.96477 0.93649 1.20802 0.98107 0.99301 0.88370 1.98380 1.87434 1.96085 1.20818 1.20652 0.97305 0.94358 0.93286 1.98384 1.83569 1.51398 1.69169 1.21178 1.00496 0.98429 0.91093 1.21051 0.97854 1.02077 0.93888 1.22221 0.95070 0.94836 0.95481 0.92922 0.95733 0.96445 0.95410 0.92021 0.87575 0.90055 0.87455 0.84052 0.83916 0.84002 0.91099 0.90295 0.91192 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.62 4.35 -27.88 -0.12 0.50 16 10 C 0.06 1.11 4.43 -3.82 -0.02 1.09 16 11 N -0.53 -8.95 5.12 -236.13 -1.21 -10.16 16 12 C 0.07 1.11 5.68 -5.27 -0.03 1.08 16 13 C -0.14 -1.98 9.10 -36.40 -0.33 -2.31 16 14 C -0.11 -1.46 4.68 -102.51 -0.48 -1.94 16 15 C -0.02 -0.19 5.17 -105.02 -0.54 -0.73 16 16 C -0.09 -1.04 9.75 -39.19 -0.38 -1.42 16 17 C -0.10 -1.01 9.81 -39.61 -0.39 -1.39 16 18 C -0.04 -0.43 6.33 -39.38 -0.25 -0.68 16 19 Cl -0.06 -0.58 27.94 -51.86 -1.45 -2.03 16 20 C -0.03 -0.32 6.32 -39.52 -0.25 -0.57 16 21 Cl -0.05 -0.57 27.94 -51.86 -1.45 -2.02 16 22 C -0.09 -1.05 9.46 -39.17 -0.37 -1.42 16 23 C -0.11 -1.38 5.24 -27.80 -0.15 -1.53 16 24 C 0.05 0.70 6.04 -3.61 -0.02 0.68 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.45 6.41 -51.93 -0.33 0.12 16 28 H 0.03 0.55 5.55 -51.93 -0.29 0.26 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.11 1.94 5.65 -51.93 -0.29 1.65 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 1.47 7.98 -52.49 -0.42 1.05 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.05 6.86 -51.93 -0.36 0.70 16 38 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -28.97 347.51 -11.93 -40.90 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.03 Total: -0.85 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -3.74 Total: -21.76 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.47 Total: -35.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.90 Total: -4.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.97 -11.93 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.598 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds