Wall clock time and date at job start Tue Mar 31 2020 15:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99442 * 2 1 4 4 H 1.48505 * 109.46899 * 239.99860 * 3 2 1 5 5 H 1.48496 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00013 * 3 2 1 7 7 C 1.37871 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47301 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47046 * 185.59697 * 10 9 7 12 12 C 1.46836 * 110.99626 * 306.59649 * 11 10 9 13 13 C 1.50166 * 110.25213 * 287.75170 * 12 11 10 14 14 C 1.31476 * 123.06042 * 342.94410 * 13 12 11 15 15 C 1.47809 * 118.66385 * 180.31710 * 14 13 12 16 16 C 1.39567 * 120.12036 * 244.72913 * 15 14 13 17 17 C 1.37940 * 119.88851 * 179.74876 * 16 15 14 18 18 C 1.38460 * 120.14469 * 0.54323 * 17 16 15 19 19 Cl 1.73594 * 119.87575 * 179.72474 * 18 17 16 20 20 C 1.38551 * 120.24523 * 359.70922 * 18 17 16 21 21 Cl 1.73605 * 119.94948 * 179.97438 * 20 18 17 22 22 C 1.38081 * 120.10481 * 0.02562 * 20 18 17 23 23 C 1.50778 * 122.75315 * 0.24942 * 14 13 12 24 24 C 1.47215 * 110.99707 * 183.59168 * 11 10 9 25 25 H 0.96996 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46964 * 59.99341 * 9 7 2 27 27 H 1.09003 * 109.47091 * 300.00037 * 9 7 2 28 28 H 1.08999 * 109.47148 * 65.59250 * 10 9 7 29 29 H 1.09004 * 109.46709 * 305.59283 * 10 9 7 30 30 H 1.09001 * 109.34068 * 47.99569 * 12 11 10 31 31 H 1.09000 * 109.33407 * 167.50943 * 12 11 10 32 32 H 1.07998 * 118.46524 * 162.92765 * 13 12 11 33 33 H 1.07994 * 120.05588 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.92785 * 180.27938 * 17 16 15 35 35 H 1.08005 * 120.07295 * 180.02562 * 22 20 18 36 36 H 1.09000 * 109.68727 * 223.53640 * 23 14 13 37 37 H 1.09000 * 109.40758 * 103.53693 * 23 14 13 38 38 H 1.09001 * 109.62539 * 173.84306 * 24 11 10 39 39 H 1.08995 * 109.63051 * 294.23085 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5160 -4.9300 -0.1345 12 6 0.4664 -5.0444 0.8859 13 6 1.0778 -5.2910 2.2351 14 6 2.3155 -5.7039 2.3970 15 6 2.8160 -5.9224 3.7705 16 6 3.8510 -5.1322 4.2728 17 6 4.3109 -5.3368 5.5571 18 6 3.7556 -6.3313 6.3443 19 17 4.3446 -6.5875 7.9570 20 6 2.7314 -7.1226 5.8497 21 17 2.0412 -8.3677 6.8432 22 6 2.2595 -6.9230 4.5675 23 6 3.2461 -5.9655 1.2400 24 6 2.4340 -6.0779 -0.0528 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8044 -3.6622 0.9363 29 1 2.9362 -3.5494 -0.8352 30 1 -0.1113 -4.1205 0.9147 31 1 -0.1948 -5.8730 0.6321 32 1 0.4726 -5.1210 3.1133 33 1 4.2887 -4.3595 3.6582 34 1 5.1087 -4.7228 5.9479 35 1 1.4608 -7.5398 4.1826 36 1 3.7896 -6.8951 1.4088 37 1 3.9553 -5.1424 1.1523 38 1 1.8610 -7.0051 -0.0456 39 1 3.1073 -6.0702 -0.9099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358056849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:16 Heat of formation + Delta-G solvation = 8.502289 kcal Electronic energy + Delta-G solvation = -22299.017351 eV Core-core repulsion = 18871.306355 eV Total energy + Delta-G solvation = -3427.710996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.12575 -39.94440 -37.66498 -37.60217 -35.65483 -34.47236 -32.29873 -31.94395 -31.61812 -30.09681 -27.08102 -25.28952 -24.35148 -23.63466 -23.32958 -21.70846 -18.92782 -18.65546 -18.02249 -17.25827 -16.98019 -16.58061 -16.14879 -15.94457 -15.68808 -15.36206 -15.09849 -14.93511 -14.59011 -14.15286 -13.99692 -13.56500 -13.31764 -13.16279 -12.96431 -12.94942 -12.85249 -12.68163 -12.57490 -12.41758 -12.29949 -12.08366 -11.94551 -11.74874 -11.57351 -11.23270 -11.17292 -10.51100 -10.13830 -10.00548 -9.46034 -9.10249 -8.17548 -6.27912 -0.25008 0.00133 0.72694 1.04342 1.18004 1.41406 1.43884 1.51601 2.32997 2.41971 3.13864 3.16251 3.52873 3.60064 3.86645 4.00553 4.09337 4.16334 4.20742 4.34250 4.36741 4.53412 4.61899 4.66732 4.69458 4.77323 4.85130 4.90445 4.96795 5.00425 5.08713 5.16324 5.27621 5.42527 5.49287 5.56349 5.68869 5.81538 5.85056 6.16621 6.33410 6.37940 6.89198 7.40932 8.94136 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.003021 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.368031 B = 9265.910354 C =10342.422804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.076 3.924 11 N -0.542 5.542 12 C 0.075 3.925 13 C -0.159 4.159 14 C -0.096 4.096 15 C -0.028 4.028 16 C -0.096 4.096 17 C -0.092 4.092 18 C -0.044 4.044 19 Cl -0.050 7.050 20 C -0.036 4.036 21 Cl -0.050 7.050 22 C -0.091 4.091 23 C -0.108 4.108 24 C 0.053 3.947 25 H 0.263 0.737 26 H -0.010 1.010 27 H -0.003 1.003 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -17.411 11.918 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.052 4.052 11 N -0.264 5.264 12 C -0.053 4.053 13 C -0.178 4.178 14 C -0.096 4.096 15 C -0.029 4.029 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.071 4.071 19 Cl -0.021 7.021 20 C -0.063 4.063 21 Cl -0.020 7.020 22 C -0.110 4.110 23 C -0.146 4.146 24 C -0.075 4.075 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.898 -17.449 11.667 22.427 hybrid contribution 0.299 1.045 1.094 1.543 sum 8.197 -16.404 12.761 22.341 Atomic orbital electron populations 1.70087 1.07737 1.27709 1.51576 1.25901 0.95683 1.03108 0.94783 0.85572 0.78342 0.78390 0.79186 1.19181 1.21030 1.19160 1.21598 0.93493 0.92320 1.50631 0.92229 1.18976 0.94273 0.92133 0.94868 1.22000 0.95982 0.88253 0.98937 1.62726 1.13920 1.02775 1.46990 1.21164 0.94869 1.02499 0.86736 1.23264 0.96395 0.98350 0.99811 1.19739 0.94956 1.02676 0.92253 1.19080 0.95438 0.94813 0.93549 1.21527 0.95686 0.98967 0.95251 1.21195 1.00458 0.96293 0.93127 1.20957 0.98081 0.99359 0.88743 1.98383 1.87324 1.96057 1.20374 1.20744 0.97497 0.94636 0.93445 1.98386 1.83508 1.51162 1.68992 1.21238 1.00480 0.98275 0.90995 1.21062 0.97499 1.03069 0.92998 1.22339 0.94938 0.93805 0.96430 0.92866 0.99154 0.98463 0.95014 0.92258 0.91174 0.88097 0.87337 0.83808 0.81955 0.83082 0.88628 0.90882 0.89333 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.80 4.35 29.85 0.13 1.93 16 10 C 0.08 3.04 4.43 86.30 0.38 3.42 16 11 N -0.54 -18.21 5.12 -900.97 -4.62 -22.83 16 12 C 0.08 2.40 5.68 85.40 0.48 2.88 16 13 C -0.16 -4.49 9.10 25.02 0.23 -4.26 16 14 C -0.10 -2.40 4.68 -17.80 -0.08 -2.48 16 15 C -0.03 -0.64 5.17 -20.12 -0.10 -0.75 16 16 C -0.10 -2.04 9.75 22.52 0.22 -1.83 16 17 C -0.09 -1.76 9.81 22.25 0.22 -1.54 16 18 C -0.04 -0.90 6.33 22.40 0.14 -0.76 16 19 Cl -0.05 -0.96 27.94 -2.72 -0.08 -1.04 16 20 C -0.04 -0.75 6.32 22.31 0.14 -0.61 16 21 Cl -0.05 -0.97 27.94 -2.72 -0.08 -1.05 16 22 C -0.09 -1.91 9.46 22.54 0.21 -1.69 16 23 C -0.11 -2.47 5.24 29.90 0.16 -2.31 16 24 C 0.05 1.30 6.04 86.27 0.52 1.82 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.00 -0.16 6.41 -2.39 -0.02 -0.17 16 28 H 0.03 1.24 5.55 -2.39 -0.01 1.23 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.07 2.74 5.65 -2.39 -0.01 2.72 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.11 3.00 7.98 -2.91 -0.02 2.97 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.80 6.86 -2.39 -0.02 1.79 16 38 H 0.09 1.90 8.08 -2.39 -0.02 1.88 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.57 347.51 1.95 -60.62 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.06 Total: 10.14 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 3.34 Total: -35.62 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -4.33 Total: -78.78 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.15 Total: -2.09 kcal Total: -62.57 1.95 -60.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.122 kcal (2) G-P(sol) polarization free energy of solvation -62.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds