Wall clock time and date at job start Tue Mar 31 2020 14:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47257 * 300.00503 * 3 2 1 6 6 H 1.48501 * 109.47127 * 60.00204 * 3 2 1 7 7 C 1.39966 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 175.19726 * 7 2 1 9 9 C 1.41045 * 120.00346 * 355.19622 * 7 2 1 10 10 C 1.40748 * 120.29981 * 34.90727 * 9 7 2 11 11 C 1.36448 * 119.94486 * 180.02562 * 10 9 7 12 12 C 1.38884 * 120.58675 * 359.71878 * 11 10 9 13 13 C 1.38206 * 120.61604 * 0.56312 * 12 11 10 14 14 C 1.38685 * 120.03359 * 359.43723 * 13 12 11 15 15 N 1.38996 * 120.29083 * 180.29848 * 14 13 12 16 16 C 1.34777 * 119.99632 * 24.85232 * 15 14 13 17 17 O 1.21587 * 120.00155 * 5.57514 * 16 15 14 18 18 C 1.47619 * 119.99785 * 185.57564 * 16 15 14 19 19 C 1.40800 * 119.46505 * 0.02562 * 18 16 15 20 20 C 1.35089 * 121.43891 * 180.02562 * 19 18 16 21 21 C 1.41948 * 120.26084 * 359.97316 * 20 19 18 22 22 N 1.32257 * 130.71553 * 180.02562 * 21 20 19 23 23 S 1.55513 * 109.49416 * 179.97438 * 22 21 20 24 24 N 1.55535 * 100.22041 * 359.97438 * 23 22 21 25 25 C 1.32484 * 109.37247 * 0.02562 * 24 23 22 26 26 C 1.38025 * 119.46277 * 179.72885 * 18 16 15 27 27 H 0.97002 * 120.00522 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.02425 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.70792 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.69810 * 180.27526 * 12 11 10 31 31 H 1.08002 * 119.97900 * 179.71980 * 13 12 11 32 32 H 0.96996 * 120.00726 * 204.84647 * 15 14 13 33 33 H 1.08008 * 119.28123 * 0.02562 * 19 18 16 34 34 H 1.08004 * 119.86965 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.14943 * 0.02562 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8837 2.3964 1.2125 7 6 2.0082 -1.2122 -0.0005 8 1 3.0854 -1.2138 -0.0789 9 6 1.3068 -2.4316 0.1012 10 6 0.0416 -2.5752 -0.4986 11 6 -0.6308 -3.7579 -0.3952 12 6 -0.0758 -4.8286 0.2936 13 6 1.1624 -4.7119 0.8965 14 6 1.8683 -3.5215 0.8074 15 7 3.1167 -3.4002 1.4065 16 6 3.8665 -4.4977 1.6296 17 8 3.4976 -5.5802 1.2167 18 6 5.1356 -4.3855 2.3752 19 6 5.5516 -3.1264 2.8487 20 6 6.7057 -2.9779 3.5349 21 6 7.5323 -4.1019 3.7962 22 7 8.6854 -4.1944 4.4373 23 16 9.1638 -5.6741 4.4340 24 7 7.9994 -6.3389 3.6458 25 6 7.1112 -5.4145 3.3111 26 6 5.8920 -5.5175 2.6023 27 1 -0.4851 0.8400 0.0004 28 1 -0.3969 -1.7496 -1.0395 29 1 -1.6016 -3.8638 -0.8566 30 1 -0.6187 -5.7597 0.3627 31 1 1.5823 -5.5496 1.4334 32 1 3.4483 -2.5258 1.6639 33 1 4.9346 -2.2605 2.6591 34 1 7.0007 -2.0001 3.8861 35 1 5.5564 -6.4765 2.2361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361013922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:48 Heat of formation + Delta-G solvation = 53.305902 kcal Electronic energy + Delta-G solvation = -23415.532691 eV Core-core repulsion = 19890.700738 eV Total energy + Delta-G solvation = -3524.831953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15434 -41.18287 -39.06971 -37.15975 -35.58943 -35.43016 -34.97936 -31.48518 -31.46794 -30.60748 -28.68479 -27.01672 -24.79141 -23.49450 -23.04694 -22.41369 -21.32444 -20.50662 -19.32422 -18.92237 -18.24313 -17.90493 -16.99955 -16.91874 -16.47359 -16.17176 -15.92381 -15.72050 -15.12173 -14.77851 -14.50944 -14.36930 -14.01948 -13.69771 -13.50365 -13.01601 -12.93186 -12.78945 -12.76347 -12.75860 -12.65766 -12.07837 -12.04242 -11.97739 -11.75301 -11.53551 -11.16765 -11.00595 -10.60457 -9.84973 -9.58333 -9.20222 -8.72245 -8.40247 -6.31895 -1.38077 -0.12777 0.30139 0.55439 0.70323 0.91405 1.11100 1.48010 1.56157 1.61585 1.80015 2.25959 2.28295 2.59663 2.86150 2.93326 3.61814 3.70320 3.73963 3.81402 3.94397 4.10874 4.52637 4.63180 4.68872 4.77987 4.79199 4.98388 5.07469 5.11929 5.19963 5.23755 5.37805 5.45694 5.67195 5.83014 5.87373 6.16546 6.21469 6.28469 6.66622 6.75918 6.99600 7.03296 7.30200 8.46447 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.003384 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.270987 B = 8273.415661 C = 9968.461917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.248 1.248 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.491 4.491 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.163 4.163 11 C -0.126 4.126 12 C -0.217 4.217 13 C -0.117 4.117 14 C 0.022 3.978 15 N -0.622 5.622 16 C 0.541 3.459 17 O -0.565 6.565 18 C -0.103 4.103 19 C -0.074 4.074 20 C -0.057 4.057 21 C 0.077 3.923 22 N -0.619 5.619 23 S 0.908 5.092 24 N -0.618 5.618 25 C 0.049 3.951 26 C -0.003 4.003 27 H 0.284 0.716 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.416 0.584 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.554 -2.652 9.421 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.171 1.171 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.521 4.521 8 H 0.103 0.897 9 C 0.063 3.937 10 C -0.183 4.183 11 C -0.145 4.145 12 C -0.236 4.236 13 C -0.137 4.137 14 C -0.073 4.073 15 N -0.265 5.265 16 C 0.331 3.669 17 O -0.446 6.446 18 C -0.113 4.113 19 C -0.098 4.098 20 C -0.081 4.081 21 C -0.079 4.079 22 N -0.472 5.472 23 S 0.954 5.046 24 N -0.473 5.473 25 C -0.105 4.105 26 C -0.029 4.029 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.255 0.745 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.009 -4.153 10.068 21.046 hybrid contribution -1.621 1.549 -0.867 2.404 sum 16.388 -2.604 9.201 18.974 Atomic orbital electron populations 1.69851 1.08876 1.29936 1.37859 1.26721 0.95581 1.04249 0.91406 0.85109 0.79756 0.76229 0.78380 1.17109 1.20137 1.19375 1.19561 0.95108 0.90338 1.47123 0.89725 1.17744 0.93786 0.92266 0.89858 1.21221 0.97287 0.96895 1.02876 1.20786 0.99363 0.93829 1.00520 1.20697 0.97202 0.99057 1.06667 1.20980 0.94793 0.96816 1.01152 1.17986 0.88051 0.97475 1.03756 1.42775 1.15919 1.10318 1.57479 1.18522 0.84222 0.83975 0.80220 1.90700 1.72773 1.28538 1.52622 1.19531 0.94851 0.95047 1.01855 1.20969 0.96620 0.96288 0.95946 1.20386 0.91980 0.97027 0.98680 1.21518 0.91834 0.96145 0.98383 1.72031 1.17974 1.29624 1.27556 1.78082 1.16603 0.84039 1.25918 1.72041 1.12562 1.38710 1.23994 1.21037 0.97298 0.88515 1.03685 1.20538 0.89237 0.99290 0.93868 0.90554 0.86511 0.87091 0.86718 0.86481 0.74476 0.82138 0.80913 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.43 10.60 21.83 0.23 -41.19 16 2 C 0.03 1.55 5.42 85.26 0.46 2.01 16 3 Si 0.98 34.86 29.56 68.60 2.03 36.89 16 4 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 5 H -0.28 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.27 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.49 -23.74 8.17 23.38 0.19 -23.55 16 8 H 0.08 3.80 7.46 -2.91 -0.02 3.77 16 9 C 0.07 3.43 5.56 -21.18 -0.12 3.31 16 10 C -0.16 -8.39 8.62 22.47 0.19 -8.20 16 11 C -0.13 -5.93 9.96 22.01 0.22 -5.71 16 12 C -0.22 -9.92 10.04 22.42 0.22 -9.69 16 13 C -0.12 -5.60 8.70 22.37 0.19 -5.40 16 14 C 0.02 1.06 6.46 38.91 0.25 1.31 16 15 N -0.62 -24.45 5.05 -305.06 -1.54 -25.99 16 16 C 0.54 20.26 7.55 86.72 0.65 20.91 16 17 O -0.57 -24.91 13.42 -3.99 -0.05 -24.97 16 18 C -0.10 -2.99 5.85 -20.23 -0.12 -3.10 16 19 C -0.07 -1.66 9.38 22.17 0.21 -1.45 16 20 C -0.06 -1.13 10.05 22.46 0.23 -0.90 16 21 C 0.08 1.77 7.16 42.05 0.30 2.07 16 22 N -0.62 -12.59 11.43 -72.61 -0.83 -13.42 16 23 S 0.91 13.47 23.60 -56.49 -1.33 12.14 16 24 N -0.62 -14.26 11.45 -72.79 -0.83 -15.10 16 25 C 0.05 1.27 7.15 41.88 0.30 1.57 16 26 C 0.00 -0.09 9.66 23.00 0.22 0.13 16 27 H 0.28 12.82 8.30 -92.71 -0.77 12.05 16 28 H 0.12 6.28 6.13 -2.91 -0.02 6.27 16 29 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 30 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.12 5.55 5.79 -2.91 -0.02 5.53 16 32 H 0.42 14.10 5.67 -92.71 -0.53 13.57 16 33 H 0.16 3.01 6.30 -2.91 -0.02 2.99 16 34 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.14 4.31 7.57 -2.91 -0.02 4.29 16 Total: -1.00 -65.17 317.57 1.74 -63.43 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.66 Total: 34.89 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.41 Total: -26.68 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -2.97 Total: -95.70 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 13.47 SS G_CDS: -1.33 Total: 12.14 kcal Total: -65.17 1.74 -63.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361013922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.736 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds