Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.47002 * 180.02562 * 9 7 2 11 11 C 1.81397 * 102.99785 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.40013 * 55.17431 * 11 10 9 13 13 C 1.53071 * 109.40134 * 175.00272 * 11 10 9 14 14 C 1.53341 * 108.42744 * 169.03312 * 13 11 10 15 15 C 1.52920 * 108.67334 * 292.46457 * 14 13 11 16 16 N 1.45761 * 110.48858 * 50.75337 * 15 14 13 17 17 C 1.39973 * 117.95003 * 160.92136 * 16 15 14 18 18 C 1.38851 * 120.07216 * 90.00548 * 17 16 15 19 19 C 1.38115 * 119.94665 * 179.97438 * 18 17 16 20 20 C 1.38297 * 120.08815 * 359.97438 * 19 18 17 21 21 C 1.38260 * 120.15156 * 0.02562 * 20 19 18 22 22 C 1.38231 * 120.05662 * 359.69300 * 21 20 19 23 23 Cl 1.73602 * 120.05078 * 180.27602 * 22 21 20 24 24 C 1.33361 * 124.10182 * 340.92752 * 16 15 14 25 25 O 1.21289 * 118.24070 * 182.21808 * 24 16 15 26 26 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 29 29 H 1.09001 * 109.67243 * 288.76481 * 13 11 10 30 30 H 1.09001 * 109.67488 * 49.29114 * 13 11 10 31 31 H 1.08994 * 109.60902 * 52.22321 * 14 13 11 32 32 H 1.09005 * 109.60717 * 172.54888 * 14 13 11 33 33 H 1.09000 * 109.30752 * 171.06465 * 15 14 13 34 34 H 1.09001 * 109.30387 * 290.44583 * 15 14 13 35 35 H 1.08003 * 120.03121 * 359.97438 * 18 17 16 36 36 H 1.07991 * 119.96114 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.92965 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.97528 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3517 -5.3366 0.0003 12 1 0.6640 -5.2790 -0.8435 13 6 2.2060 -6.6005 -0.1254 14 6 1.3152 -7.8173 0.1524 15 6 0.9011 -7.7950 1.6243 16 7 0.3581 -6.4904 1.9818 17 6 -0.4317 -6.4019 3.1341 18 6 0.1569 -6.1289 4.3617 19 6 -0.6249 -6.0416 5.4969 20 6 -1.9930 -6.2252 5.4124 21 6 -2.5831 -6.4973 4.1921 22 6 -1.8072 -6.5802 3.0510 23 17 -2.5492 -6.9148 1.5176 24 6 0.5665 -5.3759 1.2798 25 8 0.0966 -4.3385 1.6970 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.6154 -6.6680 -1.1334 30 1 3.0190 -6.5675 0.5998 31 1 0.4273 -7.7722 -0.4780 32 1 1.8686 -8.7320 -0.0604 33 1 0.1441 -8.5600 1.7973 34 1 1.7708 -8.0060 2.2466 35 1 1.2252 -5.9849 4.4289 36 1 -0.1673 -5.8296 6.4519 37 1 -2.6018 -6.1568 6.3018 38 1 -3.6517 -6.6406 4.1294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = -11.750319 kcal Electronic energy + Delta-G solvation = -23039.121281 eV Core-core repulsion = 19612.575772 eV Total energy + Delta-G solvation = -3426.545509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88706 -38.70806 -36.46101 -36.36221 -34.15575 -32.97483 -30.90880 -29.94131 -29.22789 -28.32929 -24.85375 -23.36193 -22.87426 -22.77406 -21.73436 -19.01600 -17.64871 -16.70304 -16.47275 -16.33366 -16.09155 -15.40545 -15.09031 -14.63485 -14.39890 -14.09374 -13.89913 -13.73347 -13.55303 -13.33728 -12.91998 -12.34644 -12.12882 -11.91729 -11.88856 -11.68213 -11.56106 -11.38656 -11.23111 -11.08274 -10.90456 -10.76715 -10.52612 -9.86379 -9.59681 -9.29761 -9.06616 -8.85570 -8.80823 -8.71968 -8.46676 -6.66388 -6.03283 -4.07100 0.98432 1.11138 2.07124 2.30337 2.90341 3.16663 3.32672 3.39093 3.45148 3.46406 3.96079 4.46536 4.61940 4.66413 4.69041 4.76379 4.81431 4.87762 5.06793 5.19449 5.22610 5.30726 5.32971 5.44281 5.49581 5.64354 5.68355 5.73955 5.93689 5.99160 6.13412 6.20049 6.23547 6.41063 6.82947 7.32006 7.40289 7.64065 7.89059 8.17772 8.49925 8.95613 9.53452 11.07670 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.004251 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.228535 B = 6585.520863 C = 7538.073153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.084 3.916 10 S -0.265 6.265 11 C -0.078 4.078 12 H 0.110 0.890 13 C -0.100 4.100 14 C -0.130 4.130 15 C 0.119 3.881 16 N -0.569 5.569 17 C 0.154 3.846 18 C -0.094 4.094 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.027 4.027 23 Cl -0.062 7.062 24 C 0.524 3.476 25 O -0.499 6.499 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -21.199 7.597 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.062 4.062 10 S -0.036 6.036 11 C -0.210 4.210 12 H 0.128 0.872 13 C -0.138 4.138 14 C -0.170 4.170 15 C -0.003 4.003 16 N -0.302 5.302 17 C 0.062 3.938 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.056 4.056 23 Cl -0.033 7.033 24 C 0.310 3.690 25 O -0.371 6.371 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.808 -20.472 7.581 21.905 hybrid contribution -1.079 0.865 -0.212 1.399 sum -2.887 -19.607 7.369 21.144 Atomic orbital electron populations 1.70001 1.06051 1.26848 1.49789 1.24941 0.94909 0.99019 0.94979 0.86361 0.80048 0.82956 0.77639 1.19522 1.20831 1.20808 1.20730 0.93236 0.89078 1.52075 0.91824 1.21414 0.93499 0.89461 1.01863 1.86546 1.19007 1.00681 1.97333 1.23149 1.00470 1.00120 0.97219 0.87233 1.21489 0.97560 0.90805 1.03956 1.21891 1.00755 0.99198 0.95108 1.21424 0.98670 0.83598 0.96613 1.44965 1.51599 1.09255 1.24407 1.17322 0.88101 1.00892 0.87446 1.21342 1.00924 0.97947 0.91120 1.21144 0.93799 0.99328 0.98503 1.21142 0.95032 0.99097 0.97205 1.20970 1.00082 1.00796 0.90945 1.21314 0.92294 1.04184 0.87764 1.98368 1.82064 1.93352 1.29549 1.20436 0.80292 0.82608 0.85683 1.90832 1.48170 1.30260 1.67827 0.92760 0.95325 0.90929 0.89739 0.90303 0.90742 0.89263 0.90834 0.91514 0.84860 0.85005 0.84933 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -15.36 9.13 -34.44 -0.31 -15.68 16 8 H 0.06 1.89 7.71 -52.49 -0.40 1.49 16 9 C 0.08 2.39 5.20 36.01 0.19 2.57 16 10 S -0.26 -6.01 20.89 -107.50 -2.25 -8.26 16 11 C -0.08 -1.38 2.91 -28.10 -0.08 -1.47 16 12 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 13 C -0.10 -1.24 5.33 -26.52 -0.14 -1.38 16 14 C -0.13 -1.22 6.02 -26.60 -0.16 -1.38 16 15 C 0.12 1.22 6.35 -4.48 -0.03 1.19 16 16 N -0.57 -8.33 2.25 -114.61 -0.26 -8.59 16 17 C 0.15 2.24 4.01 -83.65 -0.34 1.90 16 18 C -0.09 -1.22 9.97 -39.40 -0.39 -1.62 16 19 C -0.11 -1.17 10.04 -39.60 -0.40 -1.57 16 20 C -0.11 -1.07 10.04 -39.55 -0.40 -1.47 16 21 C -0.11 -1.25 9.82 -39.58 -0.39 -1.64 16 22 C -0.03 -0.38 6.34 -39.32 -0.25 -0.63 16 23 Cl -0.06 -0.86 28.44 -51.86 -1.47 -2.34 16 24 C 0.52 9.86 7.02 -11.87 -0.08 9.77 16 25 O -0.50 -11.96 13.32 5.55 0.07 -11.89 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.07 2.26 5.71 -51.92 -0.30 1.96 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -35.42 345.66 -10.76 -46.18 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -4.90 Total: -1.26 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.88 Total: -9.55 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.48 Total: -35.52 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -2.25 Total: -8.26 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.47 Total: -2.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.42 -10.76 -46.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.429 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds