Wall clock time and date at job start Tue Mar 31 2020 15:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99747 * 2 1 4 4 H 1.48497 * 109.46907 * 239.99947 * 3 2 1 5 5 H 1.48499 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47111 * 120.00094 * 3 2 1 7 7 C 1.37876 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00287 * 172.90765 * 7 2 1 9 9 C 1.50701 * 119.99935 * 352.91725 * 7 2 1 10 10 C 1.52994 * 115.55343 * 84.70564 * 9 7 2 11 11 N 1.46898 * 109.47103 * 65.17672 * 10 9 7 12 12 C 1.46900 * 111.00010 * 174.74582 * 11 10 9 13 13 H 1.08998 * 110.26872 * 325.69640 * 12 11 10 14 14 C 1.54344 * 110.30196 * 203.62254 * 12 11 10 15 15 C 1.54337 * 102.39896 * 214.61377 * 14 12 11 16 16 C 1.51371 * 105.16984 * 26.36084 * 15 14 12 17 17 C 1.38255 * 109.75649 * 342.80883 * 16 15 14 18 18 C 1.38461 * 119.88226 * 179.97438 * 17 16 15 19 19 C 1.38139 * 120.25859 * 0.02562 * 18 17 16 20 20 C 1.38307 * 119.93615 * 359.97438 * 19 18 17 21 21 Cl 1.73591 * 120.05347 * 180.02562 * 20 19 18 22 22 C 1.38381 * 119.88829 * 359.97438 * 20 19 18 23 23 Cl 1.73604 * 119.90699 * 180.02562 * 22 20 19 24 24 C 1.52998 * 117.49712 * 230.38069 * 9 7 2 25 25 C 1.53003 * 117.49533 * 299.03673 * 9 7 2 26 26 H 0.97003 * 119.99976 * 5.03288 * 1 2 3 27 27 H 1.09003 * 109.47201 * 305.17656 * 10 9 7 28 28 H 1.08999 * 109.47365 * 185.17554 * 10 9 7 29 29 H 1.00900 * 110.99703 * 298.69667 * 11 10 9 30 30 H 1.09001 * 110.82349 * 332.84430 * 14 12 11 31 31 H 1.09007 * 110.81951 * 96.19106 * 14 12 11 32 32 H 1.09004 * 110.30425 * 145.27899 * 15 14 12 33 33 H 1.08996 * 110.31056 * 267.33446 * 15 14 12 34 34 H 1.07995 * 119.87265 * 180.02562 * 18 17 16 35 35 H 1.08004 * 120.03490 * 179.97438 * 19 18 17 36 36 H 1.09003 * 117.49867 * 215.00047 * 24 9 7 37 37 H 1.08998 * 117.50031 * 0.02562 * 24 9 7 38 38 H 1.09008 * 117.49683 * 359.97438 * 25 9 7 39 39 H 1.08998 * 117.49805 * 144.99593 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0784 -1.1976 -0.1149 9 6 1.2598 -2.4941 0.1620 10 6 0.6770 -3.0849 -1.1233 11 7 1.7706 -3.4607 -2.0292 12 6 1.2544 -4.1458 -3.2218 13 1 0.3836 -4.7484 -2.9638 14 6 2.3523 -5.0316 -3.8478 15 6 2.0495 -4.9180 -5.3569 16 6 1.3544 -3.5834 -5.5220 17 6 0.8975 -3.1395 -4.2949 18 6 0.2268 -1.9316 -4.2044 19 6 0.0118 -1.1683 -5.3355 20 6 0.4682 -1.6108 -6.5638 21 17 0.2002 -0.6538 -7.9871 22 6 1.1396 -2.8173 -6.6561 23 17 1.7133 -3.3729 -8.1975 24 6 1.7690 -3.4729 1.2220 25 6 0.4691 -2.6992 1.4557 26 1 -0.4850 0.8368 -0.0737 27 1 0.0417 -2.3437 -1.6084 28 1 0.0856 -3.9680 -0.8817 29 1 2.3212 -2.6548 -2.2851 30 1 3.3434 -4.6388 -3.6208 31 1 2.2589 -6.0630 -3.5074 32 1 2.9759 -4.9354 -5.9310 33 1 1.3939 -5.7292 -5.6734 34 1 -0.1297 -1.5848 -3.2458 35 1 -0.5122 -0.2268 -5.2608 36 1 1.6888 -4.5378 1.0036 37 1 2.6423 -3.1764 1.8028 38 1 0.4880 -1.8939 2.1902 39 1 -0.4663 -3.2550 1.3911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430731372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:30 Heat of formation + Delta-G solvation = 29.885607 kcal Electronic energy + Delta-G solvation = -22940.071583 eV Core-core repulsion = 19513.287838 eV Total energy + Delta-G solvation = -3426.783746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37107 -37.40683 -36.66886 -36.51580 -35.44705 -33.27187 -31.95408 -30.32024 -28.97665 -26.87535 -25.44037 -23.58748 -22.82610 -21.19929 -21.03099 -20.40993 -19.05082 -17.02714 -16.15152 -15.97773 -15.52335 -15.33461 -14.74918 -14.59133 -14.05536 -13.84414 -13.68403 -13.36244 -12.97440 -12.44910 -12.12418 -11.96175 -11.95736 -11.70270 -11.53899 -11.49379 -11.33089 -11.07903 -10.98949 -10.94282 -10.87305 -10.87195 -10.55396 -10.47705 -10.15806 -9.44850 -8.80217 -8.71575 -8.64344 -8.46007 -8.10510 -7.58058 -6.07466 -4.13323 0.99164 1.11458 1.81053 2.20030 3.26658 3.32212 3.35792 3.45690 4.33514 4.36080 4.46323 4.81176 5.03063 5.08946 5.13711 5.21457 5.27274 5.35260 5.55209 5.55733 5.68989 5.83968 5.87976 5.94365 6.09035 6.14028 6.19753 6.28895 6.42749 6.49486 6.55009 6.66567 6.78482 6.82446 6.88214 7.14208 7.47071 7.51347 7.83731 7.87800 8.15106 8.45536 8.89824 9.52782 11.00107 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004229 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.496005 B = 6620.087573 C = 8053.763563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.101 3.899 11 N -0.666 5.666 12 C 0.124 3.876 13 H 0.091 0.909 14 C -0.105 4.105 15 C -0.079 4.079 16 C -0.076 4.076 17 C -0.102 4.102 18 C -0.078 4.078 19 C -0.099 4.099 20 C -0.033 4.033 21 Cl -0.059 7.059 22 C -0.024 4.024 23 Cl -0.063 7.063 24 C -0.200 4.200 25 C -0.163 4.163 26 H 0.260 0.740 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.352 0.648 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 -7.256 -13.185 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.028 4.028 11 N -0.296 5.296 12 C 0.013 3.987 13 H 0.108 0.892 14 C -0.143 4.143 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.105 4.105 18 C -0.096 4.096 19 C -0.118 4.118 20 C -0.061 4.061 21 Cl -0.030 7.030 22 C -0.051 4.051 23 Cl -0.034 7.034 24 C -0.237 4.237 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.172 0.828 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.162 -7.669 -13.019 15.111 hybrid contribution -0.097 1.986 -0.798 2.142 sum 0.065 -5.683 -13.817 14.940 Atomic orbital electron populations 1.69970 1.05776 1.26715 1.49230 1.24956 0.94740 0.98645 0.94626 0.86802 0.79803 0.83494 0.78788 1.20254 1.21383 1.20214 1.20417 0.93110 0.88818 1.50762 0.92300 1.18711 0.97349 0.93341 0.85581 1.21593 0.91133 0.96190 0.93861 1.60625 1.23511 1.32804 1.12636 1.21275 0.96986 0.92730 0.87698 0.89154 1.22337 0.99807 1.00212 0.91951 1.21095 0.99954 0.92495 0.98081 1.20344 0.99281 0.97064 0.91129 1.21751 0.96545 0.96049 0.96154 1.21097 0.96363 0.92898 0.99291 1.20986 1.00275 1.00800 0.89742 1.20587 1.03265 0.92864 0.89351 1.98365 1.95183 1.70857 1.38558 1.20229 1.02999 0.94798 0.87105 1.98355 1.87578 1.89241 1.28209 1.22872 0.97573 0.95843 1.07457 1.22540 0.92534 1.01357 1.03639 0.93038 0.94165 0.94332 0.82808 0.89909 0.90132 0.90282 0.89787 0.83338 0.84004 0.91659 0.90929 0.90364 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.28 12.96 55.43 0.72 -22.56 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.79 16 3 Si 0.88 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.49 -12.48 8.32 -34.44 -0.29 -12.77 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.05 1.17 1.55 -155.66 -0.24 0.92 16 10 C 0.10 2.03 5.35 -3.83 -0.02 2.01 16 11 N -0.67 -11.69 6.24 -106.85 -0.67 -12.36 16 12 C 0.12 1.78 3.18 -67.83 -0.22 1.57 16 13 H 0.09 1.28 7.75 -51.93 -0.40 0.87 16 14 C -0.11 -1.24 6.77 -25.33 -0.17 -1.41 16 15 C -0.08 -0.87 6.47 -26.85 -0.17 -1.04 16 16 C -0.08 -1.03 6.05 -104.18 -0.63 -1.66 16 17 C -0.10 -1.51 5.51 -104.20 -0.57 -2.08 16 18 C -0.08 -1.22 9.75 -39.54 -0.39 -1.60 16 19 C -0.10 -1.42 9.83 -39.59 -0.39 -1.81 16 20 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.06 -0.75 27.96 -51.86 -1.45 -2.20 16 22 C -0.02 -0.33 6.32 -39.42 -0.25 -0.58 16 23 Cl -0.06 -0.77 27.71 -51.86 -1.44 -2.21 16 24 C -0.20 -4.26 9.96 -26.70 -0.27 -4.52 16 25 C -0.16 -3.69 9.48 -26.69 -0.25 -3.94 16 26 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 27 H 0.04 0.88 5.86 -51.93 -0.30 0.57 16 28 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 29 H 0.35 6.73 8.04 -39.29 -0.32 6.41 16 30 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.15 2.59 5.97 -52.49 -0.31 2.27 16 35 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -25.47 350.79 -11.87 -37.34 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.09 Total: 7.28 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -4.20 Total: -25.85 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.05 Total: -34.92 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -2.89 Total: -4.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -25.47 -11.87 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430731372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.227 kcal (2) G-P(sol) polarization free energy of solvation -25.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds