Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76198 * 102.99845 * 2 1 4 4 C 1.39096 * 119.99504 * 359.97438 * 3 2 1 5 5 C 1.38131 * 120.24082 * 180.02562 * 4 3 2 6 6 C 1.38197 * 120.22084 * 0.02562 * 5 4 3 7 7 Cl 1.73596 * 120.01240 * 179.97438 * 6 5 4 8 8 C 1.39699 * 119.97591 * 359.97438 * 6 5 4 9 9 C 1.47787 * 120.11854 * 179.97438 * 8 6 5 10 10 O 1.21562 * 119.99670 * 5.87214 * 9 8 6 11 11 N 1.34777 * 120.00507 * 185.87365 * 9 8 6 12 12 C 1.46500 * 120.00356 * 184.72934 * 11 9 8 13 13 C 1.52995 * 109.46957 * 175.05565 * 12 11 9 14 14 C 1.50699 * 115.55088 * 59.31135 * 13 12 11 15 15 H 1.08005 * 119.99611 * 215.48709 * 14 13 12 16 16 C 1.37875 * 120.00051 * 35.75815 * 14 13 12 17 17 N 1.31510 * 119.99778 * 9.00003 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 188.99970 * 16 14 13 19 19 H 1.48503 * 109.47101 * 59.99872 * 18 16 14 20 20 H 1.48504 * 109.47143 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47154 * 299.99818 * 18 16 14 22 22 C 1.53002 * 117.49730 * 204.97776 * 13 12 11 23 23 C 1.53000 * 117.50069 * 273.63513 * 13 12 11 24 24 C 1.38647 * 119.98748 * 180.25038 * 3 2 1 25 25 H 1.08995 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46602 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.46843 * 60.00177 * 1 2 3 28 28 H 1.08004 * 119.88213 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.89306 * 179.97438 * 5 4 3 30 30 H 0.96999 * 119.99521 * 4.72915 * 11 9 8 31 31 H 1.09000 * 109.46845 * 55.05715 * 12 11 9 32 32 H 1.08996 * 109.47179 * 295.05959 * 12 11 9 33 33 H 0.96998 * 119.99652 * 184.99595 * 17 16 14 34 34 H 1.09001 * 117.49782 * 215.00374 * 22 13 12 35 35 H 1.09001 * 117.49860 * 0.02562 * 22 13 12 36 36 H 1.09003 * 117.49687 * 359.97438 * 23 13 12 37 37 H 1.09002 * 117.50191 * 144.97716 * 23 13 12 38 38 H 1.07993 * 120.11314 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6653 -0.0005 5 6 1.4979 4.0126 -0.0011 6 6 2.8161 4.4274 -0.0016 7 17 3.1932 6.1219 -0.0030 8 6 3.8452 3.4826 -0.0011 9 6 5.2560 3.9227 -0.0022 10 8 5.5244 5.1036 0.1041 11 7 6.2451 3.0150 -0.1211 12 6 7.6439 3.4380 -0.0184 13 6 8.5532 2.2085 -0.0645 14 6 8.4417 1.3638 -1.3076 15 1 8.5416 0.2904 -1.2417 16 6 8.2177 1.9617 -2.5295 17 7 8.2772 3.2706 -2.6419 18 14 7.8295 0.9125 -4.0255 19 1 6.5908 0.1326 -3.7753 20 1 7.6313 1.7896 -5.2074 21 1 8.9572 -0.0186 -4.2832 22 6 9.9316 2.3242 0.5895 23 6 8.8356 1.4887 1.2557 24 6 3.5364 2.1219 -0.0052 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.1608 2.3473 -0.0005 29 1 0.7035 4.7443 -0.0019 30 1 6.0307 2.0815 -0.2747 31 1 7.7954 3.9668 0.9226 32 1 7.8854 4.0999 -0.8501 33 1 8.0489 3.6961 -3.4831 34 1 10.7576 1.7894 0.1207 35 1 10.1903 3.2763 1.0530 36 1 8.3739 1.8914 2.1573 37 1 8.9403 0.4041 1.2254 38 1 4.3275 1.3868 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431155980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = 16.088899 kcal Electronic energy + Delta-G solvation = -22751.556281 eV Core-core repulsion = 19326.217972 eV Total energy + Delta-G solvation = -3425.338310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83012 -38.07268 -36.61448 -36.17330 -33.24011 -32.23241 -31.50672 -30.91527 -29.18195 -26.24712 -25.40814 -23.46981 -22.78046 -21.25076 -19.99246 -19.34687 -18.14251 -16.68548 -16.47454 -16.20580 -15.38407 -14.86892 -14.71455 -14.55657 -14.46233 -14.23000 -14.05019 -13.71203 -13.27193 -12.98704 -12.86930 -12.55060 -12.00066 -11.96690 -11.74773 -11.62931 -11.49657 -10.99419 -10.84947 -10.80068 -10.51751 -10.45001 -10.27433 -9.58819 -9.51202 -9.19415 -9.17051 -8.90803 -8.84126 -8.25970 -7.89395 -7.53518 -6.06698 -4.19652 0.70633 0.99600 1.26377 2.14556 2.34416 3.03812 3.23654 3.31547 3.32341 3.86546 4.00460 4.30833 4.57024 4.65373 4.74004 4.74565 4.92018 5.10810 5.22268 5.31830 5.37595 5.50718 5.65407 5.76976 5.94391 6.00157 6.10238 6.30449 6.43593 6.54600 6.61367 6.68889 6.89802 7.06525 7.26529 7.50342 7.57661 7.95341 8.30406 8.42790 8.79974 9.01403 9.43217 10.88632 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.004816 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.299679 B = 5812.971672 C = 6994.141515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.102 6.102 3 C -0.093 4.093 4 C -0.109 4.109 5 C -0.103 4.103 6 C 0.005 3.995 7 Cl -0.030 7.030 8 C -0.094 4.094 9 C 0.538 3.462 10 O -0.530 6.530 11 N -0.683 5.683 12 C 0.154 3.846 13 C 0.037 3.963 14 C -0.498 4.498 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.866 5.866 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.194 4.194 23 C -0.211 4.211 24 C -0.056 4.056 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.398 0.602 31 H 0.029 0.971 32 H 0.121 0.879 33 H 0.265 0.735 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.899 -2.980 5.173 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.140 5.860 3 C -0.206 4.206 4 C -0.133 4.133 5 C -0.124 4.124 6 C -0.026 4.026 7 Cl -0.001 7.001 8 C -0.100 4.100 9 C 0.322 3.678 10 O -0.409 6.409 11 N -0.331 5.331 12 C 0.031 3.969 13 C 0.036 3.964 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.715 3.285 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.233 4.233 23 C -0.248 4.248 24 C -0.080 4.080 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.233 0.767 31 H 0.047 0.953 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.934 -2.906 5.091 16.979 hybrid contribution -1.088 0.149 -0.884 1.410 sum -17.023 -2.756 4.208 17.751 Atomic orbital electron populations 1.23710 0.95194 1.07211 1.05651 1.85758 1.05809 1.01966 1.92426 1.21687 0.96291 0.97223 1.05384 1.21174 0.98475 0.92250 1.01405 1.20888 0.94553 0.95890 1.01052 1.21017 0.93278 0.86938 1.01354 1.98411 1.94780 1.10812 1.96054 1.20058 0.94809 0.92333 1.02755 1.17891 0.84215 0.86460 0.79242 1.90812 1.83752 1.16005 1.50290 1.45792 1.06884 1.10795 1.69607 1.21230 0.77379 0.97346 1.00923 1.19185 0.92499 0.94200 0.90484 1.20477 1.50674 0.92564 0.89767 0.92064 1.24941 0.94519 0.94912 0.98532 1.69789 1.45579 1.08494 1.26313 0.86719 0.79147 0.80348 0.82297 1.19952 1.21180 1.20126 1.22917 0.94638 0.99620 1.06113 1.22943 1.06328 0.97747 0.97830 1.21018 0.95047 0.94680 0.97257 0.87294 0.89684 0.89665 0.84910 0.84274 0.76705 0.95318 0.86149 0.92500 0.90181 0.91477 0.91355 0.90573 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.15 101.05 0.92 -0.05 16 2 S -0.10 -1.11 22.56 -107.50 -2.43 -3.53 16 3 C -0.09 -1.18 6.10 -39.11 -0.24 -1.42 16 4 C -0.11 -1.18 9.36 -39.30 -0.37 -1.55 16 5 C -0.10 -1.24 9.81 -39.64 -0.39 -1.62 16 6 C 0.00 0.07 6.35 -39.05 -0.25 -0.18 16 7 Cl -0.03 -0.50 26.02 -51.86 -1.35 -1.84 16 8 C -0.09 -1.61 5.87 -104.97 -0.62 -2.23 16 9 C 0.54 11.16 7.74 -12.36 -0.10 11.07 16 10 O -0.53 -12.34 14.00 5.31 0.07 -12.26 16 11 N -0.68 -14.46 5.37 -61.27 -0.33 -14.79 16 12 C 0.15 3.60 4.86 -4.04 -0.02 3.58 16 13 C 0.04 0.87 1.92 -155.66 -0.30 0.57 16 14 C -0.50 -12.55 8.52 -34.44 -0.29 -12.85 16 15 H 0.06 1.54 7.83 -52.48 -0.41 1.13 16 16 C 0.08 1.93 5.27 -17.82 -0.09 1.84 16 17 N -0.87 -23.25 10.62 55.43 0.59 -22.66 16 18 Si 0.89 20.13 29.55 -169.99 -5.02 15.11 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.19 -4.26 9.95 -26.69 -0.27 -4.52 16 23 C -0.21 -4.36 9.95 -26.69 -0.27 -4.62 16 24 C -0.06 -0.84 9.25 -38.95 -0.36 -1.20 16 25 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.47 7.74 -51.92 -0.40 0.07 16 27 H 0.08 0.50 7.74 -51.92 -0.40 0.09 16 28 H 0.13 1.02 5.86 -52.48 -0.31 0.71 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.40 7.97 6.23 -40.82 -0.25 7.72 16 31 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 32 H 0.12 3.23 5.69 -51.93 -0.30 2.94 16 33 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 34 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.14 2.13 6.48 -52.49 -0.34 1.79 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -28.68 346.30 -10.38 -39.06 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.50 Total: 8.89 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.63 Total: -13.18 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.26 Total: -37.46 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.43 Total: -3.53 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.35 Total: -1.84 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.68 -10.38 -39.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431155980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.151 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds