Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76198 * 102.99845 * 2 1 4 4 C 1.39096 * 119.99504 * 359.97438 * 3 2 1 5 5 C 1.38131 * 120.24082 * 180.02562 * 4 3 2 6 6 C 1.38197 * 120.22084 * 0.02562 * 5 4 3 7 7 Cl 1.73596 * 120.01240 * 179.97438 * 6 5 4 8 8 C 1.39699 * 119.97591 * 359.97438 * 6 5 4 9 9 C 1.47787 * 120.11854 * 179.97438 * 8 6 5 10 10 O 1.21562 * 119.99670 * 5.87214 * 9 8 6 11 11 N 1.34777 * 120.00507 * 185.87365 * 9 8 6 12 12 C 1.46500 * 120.00356 * 184.72934 * 11 9 8 13 13 C 1.52995 * 109.46957 * 175.05565 * 12 11 9 14 14 C 1.50699 * 115.55088 * 59.31135 * 13 12 11 15 15 H 1.08005 * 119.99611 * 215.48709 * 14 13 12 16 16 C 1.37875 * 120.00051 * 35.75815 * 14 13 12 17 17 N 1.31510 * 119.99778 * 9.00003 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 188.99970 * 16 14 13 19 19 H 1.48503 * 109.47101 * 59.99872 * 18 16 14 20 20 H 1.48504 * 109.47143 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47154 * 299.99818 * 18 16 14 22 22 C 1.53002 * 117.49730 * 204.97776 * 13 12 11 23 23 C 1.53000 * 117.50069 * 273.63513 * 13 12 11 24 24 C 1.38647 * 119.98748 * 180.25038 * 3 2 1 25 25 H 1.08995 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46602 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.46843 * 60.00177 * 1 2 3 28 28 H 1.08004 * 119.88213 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.89306 * 179.97438 * 5 4 3 30 30 H 0.96999 * 119.99521 * 4.72915 * 11 9 8 31 31 H 1.09000 * 109.46845 * 55.05715 * 12 11 9 32 32 H 1.08996 * 109.47179 * 295.05959 * 12 11 9 33 33 H 0.96998 * 119.99652 * 184.99595 * 17 16 14 34 34 H 1.09001 * 117.49782 * 215.00374 * 22 13 12 35 35 H 1.09001 * 117.49860 * 0.02562 * 22 13 12 36 36 H 1.09003 * 117.49687 * 359.97438 * 23 13 12 37 37 H 1.09002 * 117.50191 * 144.97716 * 23 13 12 38 38 H 1.07993 * 120.11314 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6653 -0.0005 5 6 1.4979 4.0126 -0.0011 6 6 2.8161 4.4274 -0.0016 7 17 3.1932 6.1219 -0.0030 8 6 3.8452 3.4826 -0.0011 9 6 5.2560 3.9227 -0.0022 10 8 5.5244 5.1036 0.1041 11 7 6.2451 3.0150 -0.1211 12 6 7.6439 3.4380 -0.0184 13 6 8.5532 2.2085 -0.0645 14 6 8.4417 1.3638 -1.3076 15 1 8.5416 0.2904 -1.2417 16 6 8.2177 1.9617 -2.5295 17 7 8.2772 3.2706 -2.6419 18 14 7.8295 0.9125 -4.0255 19 1 6.5908 0.1326 -3.7753 20 1 7.6313 1.7896 -5.2074 21 1 8.9572 -0.0186 -4.2832 22 6 9.9316 2.3242 0.5895 23 6 8.8356 1.4887 1.2557 24 6 3.5364 2.1219 -0.0052 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.1608 2.3473 -0.0005 29 1 0.7035 4.7443 -0.0019 30 1 6.0307 2.0815 -0.2747 31 1 7.7954 3.9668 0.9226 32 1 7.8854 4.0999 -0.8501 33 1 8.0489 3.6961 -3.4831 34 1 10.7576 1.7894 0.1207 35 1 10.1903 3.2763 1.0530 36 1 8.3739 1.8914 2.1573 37 1 8.9403 0.4041 1.2254 38 1 4.3275 1.3868 -0.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431155980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = 1.084530 kcal Electronic energy + Delta-G solvation = -22752.206919 eV Core-core repulsion = 19326.217972 eV Total energy + Delta-G solvation = -3425.988948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16982 -39.48992 -38.35075 -37.36943 -34.90930 -34.17864 -32.64854 -31.96249 -29.77307 -27.99288 -27.27578 -24.69596 -23.87074 -22.97269 -21.43827 -21.17081 -19.53542 -18.13120 -17.67994 -17.49818 -16.74643 -16.71876 -16.11566 -16.00123 -15.67470 -15.40083 -15.18145 -14.86984 -14.64060 -14.17656 -14.12505 -13.59322 -13.57040 -13.40711 -13.03590 -12.93034 -12.81937 -12.73457 -12.65835 -12.31857 -12.14291 -12.04863 -11.38011 -11.21678 -11.09619 -10.66520 -10.56600 -10.50823 -10.29660 -10.10049 -9.67267 -8.42157 -8.01952 -6.20404 -0.41990 -0.05352 0.44990 1.17146 1.42408 1.45198 1.46401 1.51258 1.80188 2.35274 2.41807 2.61400 3.03322 3.54010 3.60744 3.69263 4.00929 4.11656 4.23350 4.25974 4.33497 4.34327 4.52301 4.61175 4.72759 4.76199 4.78295 4.89456 4.92768 4.95426 5.00633 5.13244 5.29392 5.43751 5.52507 5.59035 5.77297 5.97612 6.36808 6.72268 6.88312 7.38695 7.44399 8.90568 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.004816 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.299679 B = 5812.971672 C = 6994.141515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.135 6.135 3 C -0.092 4.092 4 C -0.090 4.090 5 C -0.091 4.091 6 C -0.013 4.013 7 Cl -0.049 7.049 8 C -0.120 4.120 9 C 0.533 3.467 10 O -0.564 6.564 11 N -0.683 5.683 12 C 0.167 3.833 13 C 0.009 3.991 14 C -0.503 4.503 15 H 0.060 0.940 16 C 0.036 3.964 17 N -0.893 5.893 18 Si 0.940 3.060 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.273 1.273 22 C -0.197 4.197 23 C -0.184 4.184 24 C -0.066 4.066 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.402 0.598 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 -4.894 5.586 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.108 5.892 3 C -0.204 4.204 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.043 4.043 7 Cl -0.020 7.020 8 C -0.126 4.126 9 C 0.320 3.680 10 O -0.445 6.445 11 N -0.331 5.331 12 C 0.043 3.957 13 C 0.009 3.991 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.530 5.530 18 Si 0.766 3.234 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.198 1.198 22 C -0.236 4.236 23 C -0.221 4.221 24 C -0.090 4.090 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.238 0.762 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.103 -4.863 5.515 20.469 hybrid contribution -0.213 0.645 -0.967 1.181 sum -19.316 -4.219 4.548 20.288 Atomic orbital electron populations 1.23890 0.90703 1.08983 1.07198 1.85965 1.10735 1.00540 1.91992 1.21877 0.95626 0.98837 1.04095 1.21678 1.00040 0.91204 0.98432 1.21269 0.93554 0.97228 0.99088 1.21249 0.94480 0.85749 1.02843 1.98398 1.95066 1.12278 1.96260 1.19773 0.92740 0.93803 1.06263 1.18496 0.85724 0.85885 0.77896 1.90775 1.84679 1.17312 1.51753 1.45703 1.06246 1.11145 1.70016 1.20842 0.78891 0.96943 0.99018 1.19228 0.93592 0.94800 0.91524 1.20683 1.50143 0.92615 0.90555 0.92179 1.25537 0.94656 0.95598 1.00737 1.69969 1.46875 1.09807 1.26305 0.85884 0.79276 0.78924 0.79312 1.18935 1.21909 1.19780 1.22930 0.94111 1.00383 1.06130 1.22928 1.04304 0.98088 0.96749 1.20974 0.96421 0.93535 0.98107 0.85475 0.87918 0.88208 0.80594 0.80961 0.76198 0.95843 0.89720 0.93236 0.90515 0.90768 0.89845 0.89552 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.15 113.37 1.04 -0.10 16 2 S -0.13 -2.56 22.56 -56.49 -1.27 -3.84 16 3 C -0.09 -2.11 6.10 22.57 0.14 -1.97 16 4 C -0.09 -1.58 9.36 22.45 0.21 -1.37 16 5 C -0.09 -1.90 9.81 22.23 0.22 -1.69 16 6 C -0.01 -0.38 6.35 22.61 0.14 -0.24 16 7 Cl -0.05 -1.65 26.02 -2.72 -0.07 -1.72 16 8 C -0.12 -4.19 5.87 -20.09 -0.12 -4.30 16 9 C 0.53 23.09 7.74 86.77 0.67 23.77 16 10 O -0.56 -27.61 14.00 -3.91 -0.05 -27.66 16 11 N -0.68 -30.07 5.37 -466.04 -2.50 -32.57 16 12 C 0.17 8.13 4.86 86.38 0.42 8.55 16 13 C 0.01 0.44 1.92 -52.93 -0.10 0.34 16 14 C -0.50 -25.56 8.52 25.60 0.22 -25.34 16 15 H 0.06 3.01 7.83 -2.91 -0.02 2.98 16 16 C 0.04 1.88 5.27 84.65 0.45 2.33 16 17 N -0.89 -49.59 10.62 21.45 0.23 -49.37 16 18 Si 0.94 41.64 29.55 68.60 2.03 43.67 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.20 -8.62 9.95 30.62 0.30 -8.31 16 23 C -0.18 -7.39 9.95 30.62 0.30 -7.09 16 24 C -0.07 -1.96 9.25 22.68 0.21 -1.75 16 25 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.55 7.74 -2.39 -0.02 0.53 16 27 H 0.10 0.60 7.74 -2.39 -0.02 0.58 16 28 H 0.18 1.59 5.86 -2.91 -0.02 1.57 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.40 16.68 6.23 -92.71 -0.58 16.11 16 31 H 0.02 1.13 8.11 -2.39 -0.02 1.11 16 32 H 0.09 4.80 5.69 -2.39 -0.01 4.79 16 33 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 34 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.14 4.13 6.48 -2.91 -0.02 4.11 16 Total: -1.00 -64.80 346.30 2.98 -61.83 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.52 Total: 26.85 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.10 Total: -17.19 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.28 Total: -81.94 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -1.27 Total: -3.84 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -64.80 2.98 -61.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431155980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.912 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds