Wall clock time and date at job start Tue Mar 31 2020 15:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00141 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47146 * 65.00327 * 4 3 2 6 6 C 1.36939 * 120.00547 * 270.00197 * 5 4 3 7 7 H 1.07994 * 120.00405 * 142.02794 * 6 5 4 8 8 C 1.38820 * 119.99587 * 322.04181 * 6 5 4 9 9 N 1.31613 * 119.99577 * 339.44403 * 8 6 5 10 10 Si 1.86793 * 119.99856 * 159.44666 * 8 6 5 11 11 H 1.48499 * 109.47355 * 89.99991 * 10 8 6 12 12 H 1.48502 * 109.47034 * 209.99698 * 10 8 6 13 13 H 1.48504 * 109.47351 * 329.99514 * 10 8 6 14 14 C 1.46505 * 120.00134 * 89.99614 * 5 4 3 15 15 C 1.50703 * 109.46793 * 90.40442 * 14 5 4 16 16 S 1.75294 * 124.30002 * 275.61643 * 15 14 5 17 17 C 1.75898 * 92.20403 * 180.02562 * 16 15 14 18 18 C 1.39866 * 130.56188 * 179.97438 * 17 16 15 19 19 C 1.37456 * 120.17866 * 179.67157 * 18 17 16 20 20 C 1.38855 * 120.19154 * 0.02562 * 19 18 17 21 21 C 1.36087 * 120.58983 * 0.02562 * 20 19 18 22 22 C 1.39752 * 109.68783 * 359.69771 * 17 16 15 23 23 C 1.31864 * 124.29392 * 95.35926 * 15 14 5 24 24 Cl 1.73597 * 122.56616 * 359.97438 * 23 15 14 25 25 H 1.08996 * 109.46579 * 299.99494 * 1 2 3 26 26 H 1.09004 * 109.46648 * 59.99189 * 1 2 3 27 27 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46634 * 60.00343 * 3 2 1 29 29 H 1.08996 * 109.47654 * 300.00860 * 3 2 1 30 30 H 1.09002 * 109.47191 * 305.00273 * 4 3 2 31 31 H 1.08996 * 109.47161 * 185.00498 * 4 3 2 32 32 H 0.97005 * 119.99765 * 185.07874 * 9 8 6 33 33 H 1.08997 * 109.47198 * 330.40804 * 14 5 4 34 34 H 1.08998 * 109.47686 * 210.40280 * 14 5 4 35 35 H 1.08004 * 119.90631 * 359.68205 * 18 17 16 36 36 H 1.08002 * 119.90123 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.70266 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.76903 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3371 7 1 3.8154 -1.3089 -2.2454 8 6 4.5810 -1.5190 -0.2548 9 7 5.2894 -0.9148 0.6754 10 14 4.2271 -3.3481 -0.1190 11 1 5.3062 -4.1126 -0.7944 12 1 4.1678 -3.7357 1.3134 13 1 2.9258 -3.6501 -0.7677 14 6 4.2863 1.4008 -2.4148 15 6 5.7465 1.7730 -2.3898 16 16 6.4063 3.1237 -1.4881 17 6 8.0418 2.7780 -2.0354 18 6 9.2496 3.4269 -1.7591 19 6 10.4232 2.9641 -2.3049 20 6 10.4164 1.8503 -3.1340 21 6 9.2523 1.2046 -3.4167 22 6 8.0320 1.6568 -2.8696 23 6 6.6906 1.1211 -3.0397 24 17 6.3584 -0.2720 -4.0209 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8465 -0.8898 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0890 32 1 5.6897 -1.4314 1.3922 33 1 3.6801 2.3060 -2.3835 34 1 4.0678 0.8486 -3.3288 35 1 9.2601 4.2938 -1.1150 36 1 11.3533 3.4689 -2.0888 37 1 11.3430 1.4937 -3.5588 38 1 9.2622 0.3398 -4.0636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453595417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:43 Heat of formation + Delta-G solvation = 18.001416 kcal Electronic energy + Delta-G solvation = -23078.331063 eV Core-core repulsion = 19653.075686 eV Total energy + Delta-G solvation = -3425.255377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.13832 -37.33229 -36.36708 -35.39399 -33.99933 -31.51002 -30.70834 -30.00581 -28.23156 -25.69743 -25.65287 -23.30122 -22.97525 -21.76039 -20.64839 -19.33363 -17.64838 -16.72104 -15.79881 -15.63640 -15.18621 -15.09624 -14.83422 -14.50347 -14.02568 -13.92927 -13.64097 -13.46646 -13.30496 -13.15463 -12.36739 -11.92268 -11.77634 -11.57431 -11.48722 -11.14612 -10.97258 -10.82690 -10.77797 -10.60359 -10.35372 -10.26287 -10.12186 -10.05417 -9.95767 -9.77100 -9.11185 -8.86176 -8.46495 -8.00344 -7.16529 -6.60692 -5.78631 -3.26977 1.12560 1.51449 1.89289 2.27761 2.68232 3.35346 3.42878 3.49030 3.54715 4.00128 4.53176 4.65217 4.90745 5.09557 5.15952 5.38058 5.45389 5.54801 5.63507 5.72957 5.78800 5.85397 5.95847 6.03255 6.08607 6.12284 6.22230 6.25242 6.38588 6.48117 6.56059 6.60699 6.65696 6.68692 6.87512 7.10791 7.59421 7.88238 8.03244 8.53586 9.15186 9.77284 10.31444 11.24796 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.004935 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.514785 B = 5672.150852 C = 6417.322427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.049 3.951 4 C 0.142 3.858 5 N -0.553 5.553 6 C -0.230 4.230 7 H 0.063 0.937 8 C 0.025 3.975 9 N -0.883 5.883 10 Si 0.898 3.102 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.194 3.806 15 C -0.122 4.122 16 S 0.099 5.901 17 C -0.145 4.145 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.048 4.048 23 C -0.058 4.058 24 Cl -0.050 7.050 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.255 0.745 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 8.646 -5.091 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.030 4.030 4 C 0.015 3.985 5 N -0.270 5.270 6 C -0.360 4.360 7 H 0.080 0.920 8 C -0.176 4.176 9 N -0.525 5.525 10 Si 0.728 3.272 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.201 1.201 14 C 0.065 3.935 15 C -0.243 4.243 16 S 0.362 5.638 17 C -0.261 4.261 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.057 4.057 23 C -0.097 4.097 24 Cl -0.022 7.022 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.124 0.876 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.067 9.333 -4.027 10.372 hybrid contribution 0.423 -1.984 -0.610 2.118 sum 2.490 7.349 -4.637 9.039 Atomic orbital electron populations 1.22632 0.84171 1.01514 0.98416 1.88221 1.16601 1.27521 1.94825 1.23338 0.98396 0.84272 0.97033 1.21099 0.87752 0.96879 0.92726 1.44083 1.71866 1.02637 1.08371 1.18883 1.36385 0.80586 1.00128 0.91980 1.25130 0.96277 0.97753 0.98450 1.69861 1.32474 1.34952 1.15180 0.86361 0.78398 0.85528 0.76912 1.21597 1.21644 1.20088 1.20020 0.84547 0.94593 0.94305 1.25475 1.03843 0.97252 0.97763 1.83889 0.96002 1.30416 1.53499 1.22567 0.98708 1.01089 1.03697 1.20381 0.90141 0.99578 1.00209 1.20895 0.97224 0.97337 0.98572 1.20570 0.97638 0.96515 0.99572 1.20656 0.90680 0.99476 0.99303 1.18912 0.92723 0.95349 0.98697 1.20112 0.91591 0.94407 1.03591 1.98309 1.95100 1.40223 1.68567 0.95537 0.95252 0.90713 0.95470 0.95343 0.87558 0.94082 0.93455 0.93180 0.90751 0.85987 0.85840 0.86002 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.57 10.18 -35.23 -0.36 -7.93 16 3 C 0.05 0.95 6.28 37.16 0.23 1.18 16 4 C 0.14 3.16 5.72 -4.05 -0.02 3.14 16 5 N -0.55 -12.95 2.39 -174.61 -0.42 -13.36 16 6 C -0.23 -6.00 8.96 -15.06 -0.13 -6.13 16 7 H 0.06 1.67 7.91 -52.49 -0.42 1.25 16 8 C 0.02 0.68 4.97 -17.43 -0.09 0.59 16 9 N -0.88 -24.92 11.44 55.49 0.63 -24.28 16 10 Si 0.90 22.16 29.60 -169.99 -5.03 17.12 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.19 3.96 5.87 -5.19 -0.03 3.93 16 15 C -0.12 -2.47 5.96 -36.21 -0.22 -2.69 16 16 S 0.10 1.78 23.20 -107.50 -2.49 -0.71 16 17 C -0.14 -2.58 6.48 -38.41 -0.25 -2.83 16 18 C -0.08 -1.19 10.07 -39.26 -0.40 -1.58 16 19 C -0.12 -1.56 10.03 -39.64 -0.40 -1.95 16 20 C -0.12 -1.66 9.95 -40.13 -0.40 -2.06 16 21 C -0.08 -1.31 9.89 -39.24 -0.39 -1.70 16 22 C -0.05 -0.90 6.04 -105.36 -0.64 -1.53 16 23 C -0.06 -1.19 6.45 -38.62 -0.25 -1.43 16 24 Cl -0.05 -0.99 27.81 -51.86 -1.44 -2.43 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 2.77 5.51 -51.93 -0.29 2.48 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.44 16 32 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 33 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.07 1.52 7.10 -51.93 -0.37 1.15 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -29.67 351.53 -10.52 -40.19 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.85 Total: -2.43 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.86 Total: -11.48 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.22 Total: -37.64 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.36 Total: -7.93 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.49 Total: -0.71 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.44 Total: -2.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.67 -10.52 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453595417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.191 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds