Wall clock time and date at job start Tue Mar 31 2020 15:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00141 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47146 * 65.00327 * 4 3 2 6 6 C 1.36939 * 120.00547 * 270.00197 * 5 4 3 7 7 H 1.07994 * 120.00405 * 142.02794 * 6 5 4 8 8 C 1.38820 * 119.99587 * 322.04181 * 6 5 4 9 9 N 1.31613 * 119.99577 * 339.44403 * 8 6 5 10 10 Si 1.86793 * 119.99856 * 159.44666 * 8 6 5 11 11 H 1.48499 * 109.47355 * 89.99991 * 10 8 6 12 12 H 1.48502 * 109.47034 * 209.99698 * 10 8 6 13 13 H 1.48504 * 109.47351 * 329.99514 * 10 8 6 14 14 C 1.46505 * 120.00134 * 89.99614 * 5 4 3 15 15 C 1.50703 * 109.46793 * 90.40442 * 14 5 4 16 16 S 1.75294 * 124.30002 * 275.61643 * 15 14 5 17 17 C 1.75898 * 92.20403 * 180.02562 * 16 15 14 18 18 C 1.39866 * 130.56188 * 179.97438 * 17 16 15 19 19 C 1.37456 * 120.17866 * 179.67157 * 18 17 16 20 20 C 1.38855 * 120.19154 * 0.02562 * 19 18 17 21 21 C 1.36087 * 120.58983 * 0.02562 * 20 19 18 22 22 C 1.39752 * 109.68783 * 359.69771 * 17 16 15 23 23 C 1.31864 * 124.29392 * 95.35926 * 15 14 5 24 24 Cl 1.73597 * 122.56616 * 359.97438 * 23 15 14 25 25 H 1.08996 * 109.46579 * 299.99494 * 1 2 3 26 26 H 1.09004 * 109.46648 * 59.99189 * 1 2 3 27 27 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46634 * 60.00343 * 3 2 1 29 29 H 1.08996 * 109.47654 * 300.00860 * 3 2 1 30 30 H 1.09002 * 109.47191 * 305.00273 * 4 3 2 31 31 H 1.08996 * 109.47161 * 185.00498 * 4 3 2 32 32 H 0.97005 * 119.99765 * 185.07874 * 9 8 6 33 33 H 1.08997 * 109.47198 * 330.40804 * 14 5 4 34 34 H 1.08998 * 109.47686 * 210.40280 * 14 5 4 35 35 H 1.08004 * 119.90631 * 359.68205 * 18 17 16 36 36 H 1.08002 * 119.90123 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.70266 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.76903 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3371 7 1 3.8154 -1.3089 -2.2454 8 6 4.5810 -1.5190 -0.2548 9 7 5.2894 -0.9148 0.6754 10 14 4.2271 -3.3481 -0.1190 11 1 5.3062 -4.1126 -0.7944 12 1 4.1678 -3.7357 1.3134 13 1 2.9258 -3.6501 -0.7677 14 6 4.2863 1.4008 -2.4148 15 6 5.7465 1.7730 -2.3898 16 16 6.4063 3.1237 -1.4881 17 6 8.0418 2.7780 -2.0354 18 6 9.2496 3.4269 -1.7591 19 6 10.4232 2.9641 -2.3049 20 6 10.4164 1.8503 -3.1340 21 6 9.2523 1.2046 -3.4167 22 6 8.0320 1.6568 -2.8696 23 6 6.6906 1.1211 -3.0397 24 17 6.3584 -0.2720 -4.0209 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8465 -0.8898 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1764 0.0890 32 1 5.6897 -1.4314 1.3922 33 1 3.6801 2.3060 -2.3835 34 1 4.0678 0.8486 -3.3288 35 1 9.2601 4.2938 -1.1150 36 1 11.3533 3.4689 -2.0888 37 1 11.3430 1.4937 -3.5588 38 1 9.2622 0.3398 -4.0636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453595417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:43 Heat of formation + Delta-G solvation = 3.073536 kcal Electronic energy + Delta-G solvation = -23078.978384 eV Core-core repulsion = 19653.075686 eV Total energy + Delta-G solvation = -3425.902698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39532 -38.90356 -37.85945 -37.03288 -35.48502 -33.36373 -31.88460 -31.49109 -29.80237 -27.36334 -27.03475 -24.94363 -24.28817 -23.12159 -22.24385 -20.82426 -19.04972 -18.47292 -17.32758 -16.95267 -16.72869 -16.56316 -16.40509 -15.90277 -15.57933 -15.51788 -15.16325 -14.89219 -14.68056 -14.58850 -13.82074 -13.43664 -13.25535 -13.05248 -13.00438 -12.76287 -12.59956 -12.40816 -12.32921 -12.22055 -12.01894 -11.88511 -11.69503 -11.57263 -11.52154 -11.45724 -10.45739 -10.38929 -10.31908 -9.34983 -8.56302 -8.45462 -7.77116 -5.29039 -0.18226 0.32294 0.47118 0.88333 1.27784 1.44008 1.47419 1.56226 1.83430 2.56531 2.79728 3.21944 3.39692 3.60475 3.74240 3.94504 4.11402 4.36581 4.39355 4.44399 4.53309 4.55350 4.57466 4.65034 4.74294 4.77606 4.83496 4.86867 4.95215 4.99208 5.07770 5.08822 5.35735 5.47064 5.57011 5.75225 5.83955 5.99103 6.49172 6.69138 7.23600 7.88031 8.39490 9.23593 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.004935 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.514785 B = 5672.150852 C = 6417.322427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.056 3.944 4 C 0.143 3.857 5 N -0.567 5.567 6 C -0.218 4.218 7 H 0.047 0.953 8 C -0.017 4.017 9 N -0.912 5.912 10 Si 0.937 3.063 11 H -0.292 1.292 12 H -0.296 1.296 13 H -0.275 1.275 14 C 0.199 3.801 15 C -0.148 4.148 16 S 0.112 5.888 17 C -0.160 4.160 18 C -0.091 4.091 19 C -0.101 4.101 20 C -0.114 4.114 21 C -0.097 4.097 22 C -0.084 4.084 23 C -0.063 4.063 24 Cl -0.055 7.055 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 10.396 -5.588 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.023 4.023 4 C 0.017 3.983 5 N -0.285 5.285 6 C -0.349 4.349 7 H 0.065 0.935 8 C -0.214 4.214 9 N -0.556 5.556 10 Si 0.767 3.233 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.201 1.201 14 C 0.071 3.929 15 C -0.269 4.269 16 S 0.375 5.625 17 C -0.276 4.276 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.134 4.134 21 C -0.117 4.117 22 C -0.093 4.093 23 C -0.102 4.102 24 Cl -0.027 7.027 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.604 11.099 -4.550 12.525 hybrid contribution 0.104 -2.358 -0.613 2.439 sum 3.707 8.740 -5.163 10.807 Atomic orbital electron populations 1.22809 0.81605 1.02537 1.00054 1.88145 1.19553 1.28634 1.95190 1.23191 0.96338 0.84108 0.98648 1.20983 0.89862 0.96283 0.91171 1.44007 1.73262 1.02130 1.09059 1.18772 1.34853 0.82150 0.99119 0.93511 1.25504 0.97183 0.99811 0.98933 1.69979 1.34547 1.35194 1.15914 0.85744 0.77963 0.83303 0.76251 1.21936 1.22200 1.20054 1.19903 0.85373 0.94879 0.92773 1.25352 1.03564 0.98880 0.99072 1.83626 0.96723 1.29169 1.52979 1.22868 0.99331 1.01400 1.03965 1.20827 0.89539 1.00266 1.00681 1.21466 0.98205 0.96333 0.96182 1.21067 0.97992 0.95842 0.98473 1.20902 0.90839 1.00216 0.99733 1.19117 0.92919 0.96550 1.00677 1.20536 0.92818 0.93823 1.03066 1.98297 1.95203 1.40546 1.68641 0.93519 0.93827 0.90128 0.93269 0.93996 0.91224 0.93177 0.94440 0.91068 0.91453 0.83498 0.81462 0.82263 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.84 10.18 -148.98 -1.52 -18.36 16 3 C 0.06 2.13 6.28 71.98 0.45 2.58 16 4 C 0.14 6.46 5.72 86.38 0.49 6.95 16 5 N -0.57 -26.94 2.39 -706.35 -1.69 -28.62 16 6 C -0.22 -11.68 8.96 84.03 0.75 -10.93 16 7 H 0.05 2.60 7.91 -2.91 -0.02 2.58 16 8 C -0.02 -0.95 4.97 84.86 0.42 -0.53 16 9 N -0.91 -53.21 11.44 21.65 0.25 -52.96 16 10 Si 0.94 46.76 29.60 68.60 2.03 48.79 16 11 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 14 C 0.20 8.18 5.87 85.63 0.50 8.68 16 15 C -0.15 -6.04 5.96 24.87 0.15 -5.89 16 16 S 0.11 3.96 23.20 -56.49 -1.31 2.65 16 17 C -0.16 -5.47 6.48 23.03 0.15 -5.32 16 18 C -0.09 -2.38 10.07 22.48 0.23 -2.15 16 19 C -0.10 -2.15 10.03 22.23 0.22 -1.93 16 20 C -0.11 -2.62 9.95 21.92 0.22 -2.41 16 21 C -0.10 -2.96 9.89 22.49 0.22 -2.74 16 22 C -0.08 -3.11 6.04 -20.34 -0.12 -3.23 16 23 C -0.06 -2.59 6.45 23.31 0.15 -2.44 16 24 Cl -0.06 -2.20 27.81 -2.72 -0.08 -2.28 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 3.74 5.51 -2.39 -0.01 3.73 16 31 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 32 H 0.25 14.22 8.32 -92.70 -0.77 13.44 16 33 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 34 H 0.07 2.81 7.10 -2.39 -0.02 2.79 16 35 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -66.42 351.53 3.84 -62.58 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.07 Total: 5.48 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 5.09 Total: -17.28 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.44 Total: -81.58 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.52 Total: -18.36 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.31 Total: 2.65 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.08 Total: -2.28 kcal Total: -66.42 3.84 -62.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453595417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -66.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds