Wall clock time and date at job start Tue Mar 31 2020 14:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00082 * 3 2 1 5 5 H 1.48499 * 109.47052 * 29.99986 * 3 2 1 6 6 H 1.48495 * 109.46888 * 149.99925 * 3 2 1 7 7 C 1.37865 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00451 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47699 * 180.02562 * 9 7 2 11 11 S 1.65599 * 120.00141 * 165.00247 * 10 9 7 12 12 O 1.42106 * 106.40227 * 311.45608 * 11 10 9 13 13 O 1.42100 * 106.40324 * 178.54122 * 11 10 9 14 14 C 1.76199 * 107.21905 * 64.99953 * 11 10 9 15 15 C 1.39899 * 126.03444 * 269.68837 * 14 11 10 16 16 N 1.30886 * 108.24176 * 179.88020 * 15 14 11 17 17 N 1.40088 * 108.21617 * 0.38266 * 16 15 14 18 18 C 1.40255 * 126.05242 * 179.72319 * 17 16 15 19 19 C 1.38792 * 120.07618 * 179.76166 * 18 17 16 20 20 C 1.38137 * 119.95814 * 179.74389 * 19 18 17 21 21 C 1.38290 * 120.11014 * 0.55992 * 20 19 18 22 22 C 1.38244 * 120.15321 * 359.69160 * 21 20 19 23 23 C 1.38335 * 120.04108 * 0.03182 * 22 21 20 24 24 F 1.35106 * 120.05407 * 179.97438 * 23 22 21 25 25 C 1.35204 * 107.89519 * 359.75477 * 17 16 15 26 26 H 0.96998 * 120.00232 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46879 * 60.00098 * 9 7 2 28 28 H 1.09003 * 109.47077 * 300.00127 * 9 7 2 29 29 H 0.97005 * 119.99711 * 344.99902 * 10 9 7 30 30 H 1.08004 * 125.87961 * 0.02562 * 15 14 11 31 31 H 1.08006 * 120.02111 * 0.02562 * 19 18 17 32 32 H 1.07999 * 119.94304 * 180.25265 * 20 19 18 33 33 H 1.07998 * 119.91864 * 179.72262 * 21 20 19 34 34 H 1.08003 * 119.98000 * 180.02562 * 22 21 20 35 35 H 1.07998 * 126.14273 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 16 5.5818 -2.8942 -0.3716 12 8 5.8659 -2.1776 -1.5655 13 8 5.7466 -4.3004 -0.2514 14 6 6.5713 -2.1674 0.8923 15 6 7.0926 -0.8692 0.8851 16 7 7.7694 -0.6933 1.9915 17 7 7.7079 -1.8786 2.7356 18 6 8.3100 -2.1027 3.9824 19 6 8.1640 -3.3295 4.6149 20 6 8.7623 -3.5493 5.8404 21 6 9.4971 -2.5451 6.4437 22 6 9.6412 -1.3196 5.8202 23 6 9.0494 -1.0946 4.5903 24 9 9.1896 0.1031 3.9810 25 6 6.9662 -2.7687 2.0387 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 3.3966 -3.3029 0.2179 30 1 6.9576 -0.1372 0.1025 31 1 7.5867 -4.1133 4.1470 32 1 8.6520 -4.5053 6.3304 33 1 9.9599 -2.7188 7.4039 34 1 10.2160 -0.5374 6.2938 35 1 6.7314 -3.7782 2.3422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487373725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:23 Heat of formation + Delta-G solvation = -2.302295 kcal Electronic energy + Delta-G solvation = -24582.100498 eV Core-core repulsion = 20624.087967 eV Total energy + Delta-G solvation = -3958.012530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09842 -41.79032 -39.30981 -36.78250 -35.42141 -34.76030 -34.05929 -32.20822 -31.35604 -30.60214 -29.43877 -27.38305 -24.38433 -23.56693 -22.06344 -21.53857 -21.35589 -19.34647 -18.68921 -17.71145 -17.46327 -16.72138 -16.33382 -16.25742 -16.05653 -15.58275 -15.27277 -15.11254 -15.07370 -14.47755 -14.29252 -13.64832 -13.49559 -13.18595 -12.98070 -12.85073 -12.50631 -12.49390 -12.08524 -11.99223 -11.74526 -11.60090 -11.47447 -10.92459 -10.86871 -10.71717 -10.57899 -9.99010 -9.67670 -9.53395 -9.43988 -8.91140 -8.61365 -8.51896 -6.19898 -4.21362 0.19452 0.59114 0.88101 1.64027 1.95549 2.21214 3.06796 3.24911 3.31374 3.33444 3.58382 3.67380 3.96859 4.18520 4.24294 4.27184 4.31587 4.41785 4.66841 4.71669 4.81420 5.01896 5.13886 5.17473 5.43237 5.48686 5.52254 5.59365 5.78961 6.10521 6.18215 6.21322 6.66153 6.84614 6.92149 7.18806 7.38565 7.81860 8.35959 8.81545 9.38331 10.92422 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003857 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.218450 B = 7257.607179 C = 8105.665570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.083 0.917 9 C 0.217 3.783 10 N -1.095 6.095 11 S 2.721 3.279 12 O -0.959 6.959 13 O -0.978 6.978 14 C -0.794 4.794 15 C 0.144 3.856 16 N -0.277 5.277 17 N -0.319 5.319 18 C 0.118 3.882 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.097 4.097 22 C -0.135 4.135 23 C 0.107 3.893 24 F -0.113 7.113 25 C 0.176 3.824 26 H 0.267 0.733 27 H 0.018 0.982 28 H 0.033 0.967 29 H 0.415 0.585 30 H 0.206 0.794 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.453 -6.430 13.299 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.697 3.303 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.101 0.899 9 C 0.093 3.907 10 N -0.858 5.858 11 S 2.806 3.194 12 O -0.949 6.949 13 O -0.968 6.968 14 C -0.889 4.889 15 C -0.047 4.047 16 N -0.093 5.093 17 N -0.091 5.091 18 C 0.024 3.976 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.154 4.154 23 C 0.085 3.915 24 F -0.091 7.091 25 C 0.028 3.972 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.251 0.749 30 H 0.223 0.777 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 20.504 -5.704 13.308 25.101 hybrid contribution -0.367 0.764 0.178 0.866 sum 20.137 -4.940 13.486 24.734 Atomic orbital electron populations 1.69876 1.06176 1.27323 1.49609 1.24849 0.94819 0.99044 0.94143 0.86921 0.80498 0.83649 0.79221 1.19454 1.20876 1.18705 1.21043 0.88123 0.95214 1.52640 0.89929 1.19451 0.97613 0.77349 0.96314 1.55247 1.25861 1.16918 1.87730 1.01002 0.72532 0.72506 0.73386 1.93560 1.84639 1.74582 1.42130 1.93525 1.86327 1.29641 1.87337 1.32129 1.28872 1.07784 1.20091 1.23834 0.91374 0.94369 0.95107 1.77759 1.24192 1.01693 1.05697 1.46292 1.37869 1.10749 1.14153 1.17751 0.99352 0.95675 0.84800 1.20883 1.01563 0.94511 0.96338 1.21071 0.96816 1.00155 0.94127 1.21142 0.98147 0.92040 1.00252 1.21173 1.01294 0.99534 0.93424 1.17350 0.99796 0.81493 0.92817 1.91621 1.93669 1.41457 1.82378 1.22489 0.89086 0.96085 0.89500 0.92285 0.96381 0.94909 0.74942 0.77731 0.83826 0.83937 0.84176 0.83637 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.67 27.47 -169.99 -4.67 16.01 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.53 -14.28 9.83 -34.44 -0.34 -14.62 16 8 H 0.08 2.34 7.90 -52.48 -0.41 1.93 16 9 C 0.22 4.93 5.04 -5.20 -0.03 4.90 16 10 N -1.10 -20.68 5.99 -11.66 -0.07 -20.75 16 11 S 2.72 46.74 5.88 -107.50 -0.63 46.11 16 12 O -0.96 -19.10 17.34 -57.17 -0.99 -20.09 16 13 O -0.98 -17.27 17.85 -57.17 -1.02 -18.29 16 14 C -0.79 -12.39 6.14 -39.99 -0.25 -12.63 16 15 C 0.14 2.30 11.81 -17.33 -0.20 2.10 16 16 N -0.28 -4.60 10.81 30.64 0.33 -4.27 16 17 N -0.32 -4.61 3.80 -10.65 -0.04 -4.65 16 18 C 0.12 1.39 6.69 -83.51 -0.56 0.84 16 19 C -0.11 -0.92 9.45 -39.41 -0.37 -1.29 16 20 C -0.10 -0.60 10.04 -39.60 -0.40 -1.00 16 21 C -0.10 -0.55 10.04 -39.56 -0.40 -0.95 16 22 C -0.14 -1.06 10.02 -39.54 -0.40 -1.45 16 23 C 0.11 1.24 7.29 -39.26 -0.29 0.95 16 24 F -0.11 -1.61 15.54 2.25 0.03 -1.57 16 25 C 0.18 2.37 10.54 -17.10 -0.18 2.19 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 28 H 0.03 0.75 7.18 -51.93 -0.37 0.38 16 29 H 0.42 7.25 8.54 -34.47 -0.29 6.95 16 30 H 0.21 2.86 8.06 -52.48 -0.42 2.44 16 31 H 0.14 0.87 6.74 -52.48 -0.35 0.52 16 32 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 34 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.20 1.82 7.04 -52.49 -0.37 1.45 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -35.80 326.90 -7.90 -43.70 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.04 Total: 3.39 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.50 Total: -18.97 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.99 Total: -55.20 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -2.01 Total: -38.38 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.57 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.63 Total: 46.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.80 -7.90 -43.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487373725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.396 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds