Wall clock time and date at job start Tue Mar 31 2020 14:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00082 * 3 2 1 5 5 H 1.48499 * 109.47052 * 29.99986 * 3 2 1 6 6 H 1.48495 * 109.46888 * 149.99925 * 3 2 1 7 7 C 1.37865 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00451 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47699 * 180.02562 * 9 7 2 11 11 S 1.65599 * 120.00141 * 165.00247 * 10 9 7 12 12 O 1.42106 * 106.40227 * 311.45608 * 11 10 9 13 13 O 1.42100 * 106.40324 * 178.54122 * 11 10 9 14 14 C 1.76199 * 107.21905 * 64.99953 * 11 10 9 15 15 C 1.39899 * 126.03444 * 269.68837 * 14 11 10 16 16 N 1.30886 * 108.24176 * 179.88020 * 15 14 11 17 17 N 1.40088 * 108.21617 * 0.38266 * 16 15 14 18 18 C 1.40255 * 126.05242 * 179.72319 * 17 16 15 19 19 C 1.38792 * 120.07618 * 179.76166 * 18 17 16 20 20 C 1.38137 * 119.95814 * 179.74389 * 19 18 17 21 21 C 1.38290 * 120.11014 * 0.55992 * 20 19 18 22 22 C 1.38244 * 120.15321 * 359.69160 * 21 20 19 23 23 C 1.38335 * 120.04108 * 0.03182 * 22 21 20 24 24 F 1.35106 * 120.05407 * 179.97438 * 23 22 21 25 25 C 1.35204 * 107.89519 * 359.75477 * 17 16 15 26 26 H 0.96998 * 120.00232 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46879 * 60.00098 * 9 7 2 28 28 H 1.09003 * 109.47077 * 300.00127 * 9 7 2 29 29 H 0.97005 * 119.99711 * 344.99902 * 10 9 7 30 30 H 1.08004 * 125.87961 * 0.02562 * 15 14 11 31 31 H 1.08006 * 120.02111 * 0.02562 * 19 18 17 32 32 H 1.07999 * 119.94304 * 180.25265 * 20 19 18 33 33 H 1.07998 * 119.91864 * 179.72262 * 21 20 19 34 34 H 1.08003 * 119.98000 * 180.02562 * 22 21 20 35 35 H 1.07998 * 126.14273 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 16 5.5818 -2.8942 -0.3716 12 8 5.8659 -2.1776 -1.5655 13 8 5.7466 -4.3004 -0.2514 14 6 6.5713 -2.1674 0.8923 15 6 7.0926 -0.8692 0.8851 16 7 7.7694 -0.6933 1.9915 17 7 7.7079 -1.8786 2.7356 18 6 8.3100 -2.1027 3.9824 19 6 8.1640 -3.3295 4.6149 20 6 8.7623 -3.5493 5.8404 21 6 9.4971 -2.5451 6.4437 22 6 9.6412 -1.3196 5.8202 23 6 9.0494 -1.0946 4.5903 24 9 9.1896 0.1031 3.9810 25 6 6.9662 -2.7687 2.0387 26 1 -0.4850 0.8400 -0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 3.3966 -3.3029 0.2179 30 1 6.9576 -0.1372 0.1025 31 1 7.5867 -4.1133 4.1470 32 1 8.6520 -4.5053 6.3304 33 1 9.9599 -2.7188 7.4039 34 1 10.2160 -0.5374 6.2938 35 1 6.7314 -3.7782 2.3422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487373725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:23 Heat of formation + Delta-G solvation = -29.406983 kcal Electronic energy + Delta-G solvation = -24583.275845 eV Core-core repulsion = 20624.087967 eV Total energy + Delta-G solvation = -3959.187878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.98295 -42.83444 -39.95402 -38.23227 -36.88158 -36.50240 -34.92174 -34.22071 -32.14424 -31.50514 -30.25634 -29.31020 -25.20614 -24.35560 -23.97257 -22.54663 -22.26261 -20.55886 -19.93664 -19.16643 -18.40659 -17.91299 -17.62331 -17.32190 -17.15075 -17.00017 -16.31201 -16.15841 -16.08875 -15.75333 -15.25101 -15.02194 -14.74892 -14.46296 -14.41060 -14.17055 -13.72525 -13.59021 -13.25733 -13.09108 -13.01342 -12.99846 -12.75074 -12.43325 -12.28074 -11.90823 -11.86893 -11.75746 -11.60407 -10.89993 -10.79280 -10.26374 -10.05641 -9.44225 -8.32837 -6.38637 -0.60697 -0.45912 0.00707 0.73137 1.01080 1.05123 1.38086 1.39630 1.47882 2.25347 2.32810 2.47429 2.77624 2.89719 3.02630 3.12347 3.37392 3.51202 3.69521 3.81514 4.05016 4.18896 4.25044 4.27179 4.44824 4.47136 4.81245 4.89528 5.04782 5.09110 5.09873 5.14026 5.27206 5.42505 5.49569 5.84264 6.09326 6.24457 6.25984 6.68305 7.24940 8.82632 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.003857 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.218450 B = 7257.607179 C = 8105.665570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.224 3.776 10 N -1.099 6.099 11 S 2.748 3.252 12 O -0.989 6.989 13 O -0.981 6.981 14 C -0.812 4.812 15 C 0.129 3.871 16 N -0.308 5.308 17 N -0.316 5.316 18 C 0.074 3.926 19 C -0.111 4.111 20 C -0.092 4.092 21 C -0.080 4.080 22 C -0.136 4.136 23 C 0.070 3.930 24 F -0.140 7.140 25 C 0.186 3.814 26 H 0.270 0.730 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.420 0.580 30 H 0.214 0.786 31 H 0.165 0.835 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.162 0.838 35 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.599 -7.658 15.866 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.180 4.180 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.072 0.928 9 C 0.098 3.902 10 N -0.860 5.860 11 S 2.835 3.165 12 O -0.979 6.979 13 O -0.971 6.971 14 C -0.910 4.910 15 C -0.061 4.061 16 N -0.125 5.125 17 N -0.088 5.088 18 C -0.018 4.018 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.098 4.098 22 C -0.155 4.155 23 C 0.049 3.951 24 F -0.119 7.119 25 C 0.036 3.964 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.256 0.744 30 H 0.231 0.769 31 H 0.183 0.817 32 H 0.199 0.801 33 H 0.197 0.803 34 H 0.180 0.820 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 22.658 -6.957 15.876 28.528 hybrid contribution -0.933 0.971 -0.412 1.409 sum 21.725 -5.986 15.464 27.330 Atomic orbital electron populations 1.70008 1.07950 1.28394 1.51442 1.25707 0.95572 1.02850 0.93916 0.85995 0.79985 0.79140 0.79793 1.18685 1.20548 1.16623 1.21355 0.90459 0.94214 1.51640 0.92784 1.19201 0.94837 0.79437 0.96703 1.55151 1.27134 1.15636 1.88054 0.99984 0.71627 0.71982 0.72868 1.93518 1.84824 1.75182 1.44341 1.93512 1.86181 1.29880 1.87520 1.31729 1.30258 1.08149 1.20884 1.24091 0.91589 0.94963 0.95428 1.77696 1.24980 1.03587 1.06194 1.46452 1.37466 1.10031 1.14804 1.18283 1.01371 0.97544 0.84577 1.21312 1.01424 0.93421 0.96989 1.21610 0.94901 1.01622 0.92878 1.21682 0.96483 0.90598 1.01082 1.21500 1.00769 1.01162 0.92088 1.17917 1.01769 0.80962 0.94482 1.91542 1.94112 1.43061 1.83141 1.23092 0.87584 0.97258 0.88453 0.92127 0.95311 0.94824 0.74399 0.76911 0.81719 0.80063 0.80284 0.82009 0.74750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.54 13.96 21.44 0.30 -56.24 16 2 C 0.02 1.06 5.47 84.65 0.46 1.53 16 3 Si 0.93 42.37 27.47 68.60 1.88 44.26 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.54 -29.35 9.83 25.60 0.25 -29.10 16 8 H 0.05 3.17 7.90 -2.91 -0.02 3.15 16 9 C 0.22 10.08 5.04 85.63 0.43 10.51 16 10 N -1.10 -41.12 5.99 -190.79 -1.14 -42.26 16 11 S 2.75 92.48 5.88 -56.49 -0.33 92.15 16 12 O -0.99 -39.19 17.34 -128.00 -2.22 -41.41 16 13 O -0.98 -33.27 17.85 -128.00 -2.28 -35.55 16 14 C -0.81 -24.69 6.14 22.00 0.14 -24.55 16 15 C 0.13 4.15 11.81 85.24 1.01 5.16 16 16 N -0.31 -10.31 10.81 -56.98 -0.62 -10.93 16 17 N -0.32 -8.89 3.80 -187.60 -0.71 -9.61 16 18 C 0.07 1.66 6.69 38.11 0.26 1.92 16 19 C -0.11 -1.45 9.45 22.38 0.21 -1.24 16 20 C -0.09 -0.62 10.04 22.26 0.22 -0.40 16 21 C -0.08 -0.55 10.04 22.28 0.22 -0.32 16 22 C -0.14 -1.81 10.02 22.29 0.22 -1.59 16 23 C 0.07 1.58 7.29 22.48 0.16 1.74 16 24 F -0.14 -4.12 15.54 44.97 0.70 -3.42 16 25 C 0.19 4.69 10.54 83.50 0.88 5.57 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.03 1.25 7.20 -2.38 -0.02 1.24 16 28 H 0.03 1.52 7.18 -2.39 -0.02 1.51 16 29 H 0.42 14.65 8.54 -96.74 -0.83 13.83 16 30 H 0.21 6.05 8.06 -2.91 -0.02 6.03 16 31 H 0.17 1.31 6.74 -2.91 -0.02 1.29 16 32 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.24 3.62 7.04 -2.91 -0.02 3.60 16 Total: -1.00 -80.26 326.90 0.32 -79.94 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.28 Total: 13.87 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.47 Total: -30.78 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -2.17 Total: -119.04 kcal Atomic # 8 Polarization: -72.46 SS G_CDS: -4.50 Total: -76.97 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.70 Total: -3.42 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal Atomic # 16 Polarization: 92.48 SS G_CDS: -0.33 Total: 92.15 kcal Total: -80.26 0.32 -79.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487373725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.528 kcal (2) G-P(sol) polarization free energy of solvation -80.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds