Wall clock time and date at job start Tue Mar 31 2020 14:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00245 * 2 1 4 4 H 1.48493 * 109.47436 * 240.00408 * 3 2 1 5 5 H 1.48502 * 109.46880 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46887 * 119.99883 * 3 2 1 7 7 C 1.37882 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99583 * 270.00522 * 10 9 7 12 12 C 1.53006 * 109.46410 * 269.99377 * 11 10 9 13 13 C 1.52995 * 117.49846 * 243.74358 * 12 11 10 14 14 C 1.53001 * 117.49396 * 175.08712 * 12 11 10 15 15 C 1.34772 * 120.00319 * 89.99874 * 10 9 7 16 16 O 1.21798 * 119.99791 * 0.02562 * 15 10 9 17 17 C 1.41382 * 119.99831 * 180.02562 * 15 10 9 18 18 C 1.35747 * 119.99563 * 173.66465 * 17 15 10 19 19 C 1.41450 * 120.00025 * 346.36100 * 18 17 15 20 20 C 1.37095 * 125.45995 * 137.52472 * 19 18 17 21 21 C 1.37371 * 113.23640 * 179.97438 * 20 19 18 22 22 C 1.34065 * 115.09938 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 124.49784 * 180.02562 * 22 21 20 24 24 S 1.70603 * 110.99701 * 359.76406 * 22 21 20 25 25 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47282 * 60.00282 * 9 7 2 27 27 H 1.09004 * 109.47339 * 300.00061 * 9 7 2 28 28 H 1.08995 * 109.47600 * 29.99151 * 11 10 9 29 29 H 1.08998 * 109.47309 * 149.99752 * 11 10 9 30 30 H 1.09000 * 115.55277 * 29.42354 * 12 11 10 31 31 H 1.09004 * 117.49697 * 0.02562 * 13 12 11 32 32 H 1.09002 * 117.49642 * 145.02344 * 13 12 11 33 33 H 1.09002 * 117.50204 * 214.97978 * 14 12 11 34 34 H 1.09009 * 117.50064 * 0.02562 * 14 12 11 35 35 H 1.07996 * 120.00388 * 353.92547 * 17 15 10 36 36 H 1.08000 * 119.99574 * 166.37342 * 18 17 15 37 37 H 1.08000 * 123.38412 * 359.97438 * 20 19 18 38 38 H 1.08001 * 122.44730 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2694 12 6 1.7482 -5.3006 -1.7110 13 6 2.3394 -6.7091 -1.7966 14 6 2.0098 -5.9379 -3.0771 15 6 2.6409 -4.1249 1.1666 16 8 2.2448 -3.6624 2.2214 17 6 3.5600 -5.1992 1.1665 18 6 4.0996 -5.6308 2.3349 19 6 3.9786 -4.8430 3.5035 20 6 3.6832 -5.3174 4.7554 21 6 3.6280 -4.3308 5.7097 22 6 3.8694 -3.0910 5.2605 23 17 3.8630 -1.6669 6.2532 24 16 4.1909 -3.0996 3.5850 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.6867 -3.3878 -2.0290 29 1 3.6884 -4.5594 -1.1391 30 1 0.7109 -5.2088 -1.3888 31 1 3.3914 -6.8299 -1.5380 32 1 1.6910 -7.5441 -1.5310 33 1 1.1447 -6.2658 -3.6535 34 1 2.8453 -5.5516 -3.6611 35 1 3.8360 -5.6738 0.2364 36 1 4.6216 -6.5756 2.3722 37 1 3.5111 -6.3618 4.9698 38 1 3.4071 -4.5389 6.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491494801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:39 Heat of formation + Delta-G solvation = 52.708858 kcal Electronic energy + Delta-G solvation = -22828.738117 eV Core-core repulsion = 19404.987768 eV Total energy + Delta-G solvation = -3423.750349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.60689 -37.80348 -37.20985 -36.31124 -34.58301 -33.32409 -32.49777 -28.81076 -27.62616 -26.20631 -24.54927 -23.18319 -22.31319 -21.31531 -20.61443 -19.54427 -18.44571 -17.27740 -16.46043 -16.39405 -15.51353 -15.33644 -14.82721 -14.54561 -14.24063 -13.88770 -13.55792 -13.22922 -13.17424 -12.89674 -12.59616 -12.39975 -12.06894 -11.97137 -11.48026 -11.43571 -11.25895 -11.15804 -10.94374 -10.86957 -10.58811 -10.36720 -10.33259 -10.10167 -9.84422 -9.64833 -9.49029 -8.96223 -8.41873 -8.17693 -7.60199 -7.33520 -6.02904 -4.07648 0.49930 1.57367 1.95180 2.31571 2.60832 2.95079 3.31894 3.36853 3.39337 3.81967 4.02078 4.09468 4.46546 4.87171 5.02136 5.04519 5.09076 5.30436 5.32778 5.42471 5.51670 5.61216 5.66053 5.72289 5.84046 5.97792 6.01952 6.06897 6.15867 6.20809 6.27777 6.46048 6.52129 6.64209 7.11739 7.47014 7.55427 7.93162 8.24441 8.42325 8.90439 9.08776 9.57216 11.04902 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.005952 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.178620 B = 4703.359454 C = 7497.865781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.246 3.754 10 N -0.585 5.585 11 C 0.140 3.860 12 C -0.163 4.163 13 C -0.184 4.184 14 C -0.177 4.177 15 C 0.522 3.478 16 O -0.529 6.529 17 C -0.204 4.204 18 C -0.009 4.009 19 C -0.187 4.187 20 C -0.114 4.114 21 C -0.143 4.143 22 C -0.203 4.203 23 Cl -0.031 7.031 24 S 0.351 5.649 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 -13.275 2.350 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.127 3.873 10 N -0.314 5.314 11 C 0.016 3.984 12 C -0.183 4.183 13 C -0.220 4.220 14 C -0.215 4.215 15 C 0.312 3.688 16 O -0.411 6.411 17 C -0.228 4.228 18 C -0.031 4.031 19 C -0.307 4.307 20 C -0.145 4.145 21 C -0.177 4.177 22 C -0.349 4.349 23 Cl -0.003 7.003 24 S 0.623 5.377 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.441 -11.533 1.949 15.032 hybrid contribution -0.233 -0.121 1.049 1.081 sum 9.208 -11.655 2.998 15.153 Atomic orbital electron populations 1.69918 1.05966 1.27046 1.50337 1.24900 0.94817 0.99047 0.95116 0.86645 0.79653 0.83014 0.78682 1.20234 1.21186 1.20073 1.21353 0.93222 0.90550 1.51151 0.92543 1.19273 0.87545 0.82058 0.98415 1.48208 1.45126 1.34135 1.03955 1.21056 0.95127 0.94728 0.87503 1.22933 1.01495 0.93844 1.00018 1.23036 1.01337 0.95349 1.02327 1.22917 1.03361 1.04465 0.90760 1.17056 0.83810 0.83381 0.84544 1.90926 1.58360 1.62054 1.29710 1.22600 1.00264 1.01176 0.98760 1.20549 0.95811 0.96700 0.90043 1.22529 1.12424 0.98296 0.97411 1.20373 1.03680 0.99925 0.90494 1.19705 1.06283 0.90363 1.01362 1.25133 1.17174 0.92546 1.00089 1.98335 1.97390 1.36388 1.68186 1.83499 1.57629 1.01479 0.95071 0.92702 0.95122 0.93758 0.89456 0.91371 0.87439 0.88995 0.89182 0.89028 0.88766 0.85050 0.84500 0.84087 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.46 9.39 -34.44 -0.32 -14.78 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 10 N -0.58 -11.90 2.46 -178.54 -0.44 -12.34 16 11 C 0.14 2.20 5.35 -4.03 -0.02 2.18 16 12 C -0.16 -2.22 6.01 -90.62 -0.54 -2.77 16 13 C -0.18 -1.95 9.70 -26.70 -0.26 -2.21 16 14 C -0.18 -1.93 10.25 -26.70 -0.27 -2.20 16 15 C 0.52 10.39 6.92 -15.07 -0.10 10.29 16 16 O -0.53 -12.36 11.41 5.10 0.06 -12.30 16 17 C -0.20 -3.03 8.99 -39.28 -0.35 -3.39 16 18 C -0.01 -0.12 9.87 -39.25 -0.39 -0.51 16 19 C -0.19 -2.93 4.60 -38.77 -0.18 -3.10 16 20 C -0.11 -1.62 10.25 -40.31 -0.41 -2.03 16 21 C -0.14 -2.14 10.08 -41.37 -0.42 -2.56 16 22 C -0.20 -3.40 6.82 29.26 0.20 -3.20 16 23 Cl -0.03 -0.49 29.27 -51.86 -1.52 -2.01 16 24 S 0.35 6.26 19.46 -107.50 -2.09 4.17 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 29 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 30 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.09 0.85 7.30 -51.93 -0.38 0.47 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.13 1.56 4.94 -52.49 -0.26 1.30 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -31.63 350.14 -10.87 -42.50 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.67 Total: 0.03 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.20 Total: -16.35 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.30 Total: -37.98 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.06 Total: -12.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -2.09 Total: 4.17 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.63 -10.87 -42.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.206 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds