Wall clock time and date at job start Tue Mar 31 2020 14:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00245 * 2 1 4 4 H 1.48493 * 109.47436 * 240.00408 * 3 2 1 5 5 H 1.48502 * 109.46880 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46887 * 119.99883 * 3 2 1 7 7 C 1.37882 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99583 * 270.00522 * 10 9 7 12 12 C 1.53006 * 109.46410 * 269.99377 * 11 10 9 13 13 C 1.52995 * 117.49846 * 243.74358 * 12 11 10 14 14 C 1.53001 * 117.49396 * 175.08712 * 12 11 10 15 15 C 1.34772 * 120.00319 * 89.99874 * 10 9 7 16 16 O 1.21798 * 119.99791 * 0.02562 * 15 10 9 17 17 C 1.41382 * 119.99831 * 180.02562 * 15 10 9 18 18 C 1.35747 * 119.99563 * 173.66465 * 17 15 10 19 19 C 1.41450 * 120.00025 * 346.36100 * 18 17 15 20 20 C 1.37095 * 125.45995 * 137.52472 * 19 18 17 21 21 C 1.37371 * 113.23640 * 179.97438 * 20 19 18 22 22 C 1.34065 * 115.09938 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 124.49784 * 180.02562 * 22 21 20 24 24 S 1.70603 * 110.99701 * 359.76406 * 22 21 20 25 25 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47282 * 60.00282 * 9 7 2 27 27 H 1.09004 * 109.47339 * 300.00061 * 9 7 2 28 28 H 1.08995 * 109.47600 * 29.99151 * 11 10 9 29 29 H 1.08998 * 109.47309 * 149.99752 * 11 10 9 30 30 H 1.09000 * 115.55277 * 29.42354 * 12 11 10 31 31 H 1.09004 * 117.49697 * 0.02562 * 13 12 11 32 32 H 1.09002 * 117.49642 * 145.02344 * 13 12 11 33 33 H 1.09002 * 117.50204 * 214.97978 * 14 12 11 34 34 H 1.09009 * 117.50064 * 0.02562 * 14 12 11 35 35 H 1.07996 * 120.00388 * 353.92547 * 17 15 10 36 36 H 1.08000 * 119.99574 * 166.37342 * 18 17 15 37 37 H 1.08000 * 123.38412 * 359.97438 * 20 19 18 38 38 H 1.08001 * 122.44730 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2694 12 6 1.7482 -5.3006 -1.7110 13 6 2.3394 -6.7091 -1.7966 14 6 2.0098 -5.9379 -3.0771 15 6 2.6409 -4.1249 1.1666 16 8 2.2448 -3.6624 2.2214 17 6 3.5600 -5.1992 1.1665 18 6 4.0996 -5.6308 2.3349 19 6 3.9786 -4.8430 3.5035 20 6 3.6832 -5.3174 4.7554 21 6 3.6280 -4.3308 5.7097 22 6 3.8694 -3.0910 5.2605 23 17 3.8630 -1.6669 6.2532 24 16 4.1909 -3.0996 3.5850 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.6867 -3.3878 -2.0290 29 1 3.6884 -4.5594 -1.1391 30 1 0.7109 -5.2088 -1.3888 31 1 3.3914 -6.8299 -1.5380 32 1 1.6910 -7.5441 -1.5310 33 1 1.1447 -6.2658 -3.6535 34 1 2.8453 -5.5516 -3.6611 35 1 3.8360 -5.6738 0.2364 36 1 4.6216 -6.5756 2.3722 37 1 3.5111 -6.3618 4.9698 38 1 3.4071 -4.5389 6.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491494801.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:38 Heat of formation + Delta-G solvation = 35.899319 kcal Electronic energy + Delta-G solvation = -22829.467033 eV Core-core repulsion = 19404.987768 eV Total energy + Delta-G solvation = -3424.479265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04842 -38.98001 -38.33993 -37.55455 -36.16576 -34.64551 -34.45062 -30.38985 -29.14461 -27.60100 -26.05076 -24.77330 -23.14420 -22.77838 -21.72686 -20.72029 -19.81886 -18.65622 -18.51755 -17.74766 -16.94774 -16.71911 -16.19116 -16.02693 -15.67062 -15.09386 -14.80928 -14.55040 -14.38794 -14.28967 -14.12614 -13.83253 -13.52030 -13.36748 -13.12171 -12.90258 -12.58121 -12.53925 -12.36429 -12.22439 -12.19604 -12.11445 -11.74407 -11.60006 -11.21319 -10.88897 -10.70034 -10.62370 -10.38117 -9.60611 -8.99173 -8.73961 -8.19243 -6.33919 -0.69919 0.34928 0.75723 1.08007 1.34458 1.37583 1.38831 1.45362 1.78735 2.32760 2.52426 2.66611 3.03404 3.09541 3.83611 4.00813 4.04141 4.08760 4.25631 4.32423 4.40382 4.51212 4.65946 4.78448 4.86056 4.89075 4.90913 5.00670 5.05962 5.11620 5.23433 5.30289 5.36765 5.37081 5.40279 5.57041 5.61564 5.91846 6.09999 6.74128 6.89280 7.31947 7.57770 8.86438 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.005952 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.178620 B = 4703.359454 C = 7497.865781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.268 3.732 10 N -0.595 5.595 11 C 0.142 3.858 12 C -0.193 4.193 13 C -0.159 4.159 14 C -0.166 4.166 15 C 0.513 3.487 16 O -0.574 6.574 17 C -0.220 4.220 18 C 0.017 3.983 19 C -0.188 4.188 20 C -0.106 4.106 21 C -0.138 4.138 22 C -0.217 4.217 23 Cl -0.032 7.032 24 S 0.264 5.736 25 H 0.265 0.735 26 H 0.013 0.987 27 H -0.004 1.004 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.195 0.805 37 H 0.182 0.818 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -16.091 2.096 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.146 3.854 10 N -0.324 5.324 11 C 0.019 3.981 12 C -0.212 4.212 13 C -0.196 4.196 14 C -0.203 4.203 15 C 0.306 3.694 16 O -0.458 6.458 17 C -0.244 4.244 18 C -0.004 4.004 19 C -0.308 4.308 20 C -0.136 4.136 21 C -0.173 4.173 22 C -0.363 4.363 23 Cl -0.004 7.004 24 S 0.536 5.464 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.014 0.986 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.184 0.816 36 H 0.212 0.788 37 H 0.199 0.801 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.714 -14.379 1.665 18.621 hybrid contribution -0.969 0.679 1.238 1.713 sum 10.744 -13.699 2.903 17.650 Atomic orbital electron populations 1.70049 1.07535 1.27949 1.51391 1.25775 0.95654 1.02729 0.94707 0.85639 0.78528 0.78686 0.79097 1.18323 1.20541 1.20264 1.21630 0.93167 0.91720 1.50574 0.92787 1.18598 0.87920 0.83768 0.95112 1.48140 1.44584 1.33318 1.06337 1.21226 0.97143 0.94854 0.84878 1.22637 0.99675 0.95550 1.03365 1.23175 1.02569 0.93049 1.00770 1.23031 1.03983 1.03159 0.90137 1.17914 0.84084 0.83999 0.83438 1.90918 1.60073 1.63680 1.31146 1.22520 1.00658 1.00120 1.01088 1.21160 0.93809 0.97424 0.88052 1.22845 1.12553 0.96247 0.99106 1.20851 1.01766 1.01587 0.89427 1.20140 1.04535 0.89781 1.02821 1.25211 1.18486 0.93338 0.99231 1.98323 1.97461 1.36722 1.67904 1.83750 1.59961 1.05346 0.97311 0.92611 0.96854 0.98598 0.91272 0.88055 0.90660 0.86507 0.88375 0.88513 0.87340 0.81592 0.78808 0.80088 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.53 -30.73 9.39 25.60 0.24 -30.49 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 9 C 0.27 14.58 5.16 85.63 0.44 15.02 16 10 N -0.59 -25.06 2.46 -836.97 -2.06 -27.11 16 11 C 0.14 4.40 5.35 86.38 0.46 4.87 16 12 C -0.19 -5.11 6.01 -10.79 -0.06 -5.18 16 13 C -0.16 -2.82 9.70 30.62 0.30 -2.52 16 14 C -0.17 -3.20 10.25 30.62 0.31 -2.89 16 15 C 0.51 20.63 6.92 85.02 0.59 21.22 16 16 O -0.57 -27.83 11.41 -4.66 -0.05 -27.88 16 17 C -0.22 -5.96 8.99 22.47 0.20 -5.76 16 18 C 0.02 0.38 9.87 22.48 0.22 0.60 16 19 C -0.19 -5.47 4.60 22.79 0.10 -5.37 16 20 C -0.11 -2.67 10.25 21.80 0.22 -2.45 16 21 C -0.14 -3.88 10.08 21.11 0.21 -3.67 16 22 C -0.22 -7.25 6.82 66.87 0.46 -6.79 16 23 Cl -0.03 -1.04 29.27 -2.72 -0.08 -1.12 16 24 S 0.26 9.60 19.46 -56.49 -1.10 8.50 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 26 H 0.01 0.76 8.07 -2.39 -0.02 0.74 16 27 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 28 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 29 H 0.10 2.41 5.91 -2.39 -0.01 2.40 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.12 1.52 7.30 -2.38 -0.02 1.50 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.17 3.20 4.94 -2.91 -0.01 3.19 16 36 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.18 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -75.17 350.14 4.26 -70.90 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.08 Total: 8.42 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.16 Total: -22.36 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.77 Total: -84.06 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -1.10 Total: 8.50 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -75.17 4.26 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491494801.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.803 kcal (2) G-P(sol) polarization free energy of solvation -75.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds