Wall clock time and date at job start Tue Mar 31 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86798 * 119.99782 * 2 1 4 4 H 1.48505 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47061 * 299.99486 * 3 2 1 6 6 H 1.48495 * 109.47373 * 59.99664 * 3 2 1 7 7 C 1.38954 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00009 * 193.27917 * 7 2 1 9 9 N 1.36920 * 119.99845 * 13.27356 * 7 2 1 10 10 C 1.34780 * 119.99851 * 199.14972 * 9 7 2 11 11 O 1.21845 * 120.00372 * 354.70020 * 10 9 7 12 12 C 1.41180 * 120.00015 * 174.71097 * 10 9 7 13 13 C 1.35226 * 119.99819 * 173.95248 * 12 10 9 14 14 S 1.76197 * 120.00030 * 359.97438 * 13 12 10 15 15 C 1.76205 * 99.99609 * 186.30269 * 14 13 12 16 16 C 1.38871 * 120.07415 * 7.67340 * 15 14 13 17 17 C 1.38311 * 119.92388 * 180.02562 * 16 15 14 18 18 F 1.35103 * 119.96977 * 179.97438 * 17 16 15 19 19 C 1.38517 * 120.07240 * 359.97438 * 17 16 15 20 20 C 1.38283 * 120.13587 * 0.02562 * 19 17 16 21 21 C 1.38274 * 120.08033 * 359.72224 * 20 19 17 22 22 F 1.35096 * 120.03428 * 180.27736 * 21 20 19 23 23 C 1.46501 * 120.00499 * 19.41963 * 9 7 2 24 24 C 1.52999 * 117.49966 * 130.74696 * 23 9 7 25 25 C 1.53009 * 60.00260 * 252.51621 * 24 23 9 26 26 H 0.97001 * 120.00210 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99570 * 353.94107 * 12 10 9 28 28 H 1.07999 * 119.99566 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.03646 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.93574 * 180.02562 * 19 17 16 31 31 H 1.07999 * 119.95372 * 180.02562 * 20 19 17 32 32 H 1.08996 * 115.54950 * 276.45997 * 23 9 7 33 33 H 1.09004 * 117.49917 * 0.02562 * 24 23 9 34 34 H 1.08998 * 117.50213 * 145.02817 * 24 23 9 35 35 H 1.08998 * 117.49829 * 252.51364 * 25 24 23 36 36 H 1.09000 * 117.51731 * 107.47660 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3465 0.0006 5 1 1.8896 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0091 -1.2034 0.0005 8 1 3.0674 -1.2157 0.2154 9 7 1.3520 -2.3734 -0.2712 10 6 1.8946 -3.5517 0.0946 11 8 3.0119 -3.5836 0.5794 12 6 1.1683 -4.7491 -0.0842 13 6 1.7563 -5.9405 0.1676 14 16 3.4291 -5.9985 0.7181 15 6 3.6993 -7.7395 0.6925 16 6 2.7405 -8.5847 0.1495 17 6 2.9556 -9.9508 0.1314 18 9 2.0232 -10.7739 -0.3962 19 6 4.1260 -10.4761 0.6538 20 6 5.0826 -9.6371 1.1952 21 6 4.8761 -8.2699 1.2116 22 9 5.8137 -7.4507 1.7357 23 6 0.0618 -2.3450 -0.9648 24 6 -0.1159 -3.2777 -2.1646 25 6 0.0347 -1.7707 -2.3827 26 1 -0.4850 0.8400 -0.0004 27 1 0.1431 -4.7134 -0.4219 28 1 1.2006 -6.8564 0.0312 29 1 1.8276 -8.1757 -0.2576 30 1 4.2919 -11.5431 0.6382 31 1 5.9943 -10.0498 1.6013 32 1 -0.8079 -2.1663 -0.3326 33 1 0.7269 -3.9127 -2.4376 34 1 -1.1027 -3.7128 -2.3219 35 1 -0.8532 -1.2146 -2.6835 36 1 0.9766 -1.4138 -2.7993 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493534042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:07 Heat of formation + Delta-G solvation = -38.594258 kcal Electronic energy + Delta-G solvation = -24102.572583 eV Core-core repulsion = 20123.066354 eV Total energy + Delta-G solvation = -3979.506229 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.97958 -49.96800 -40.92919 -39.62643 -38.03663 -35.24510 -33.82010 -33.07705 -32.41444 -30.91321 -27.66385 -25.06250 -24.60948 -23.71282 -23.15144 -22.69689 -20.53631 -19.02949 -18.96510 -18.61076 -18.32177 -18.03782 -17.13336 -16.95150 -16.83757 -16.39637 -16.15067 -16.06079 -15.63020 -15.40222 -15.18518 -14.96612 -14.27227 -14.13285 -14.08304 -13.68802 -13.52336 -13.31801 -13.03507 -12.95576 -12.53965 -12.28956 -12.16124 -12.01988 -11.84920 -11.80054 -11.57303 -11.07001 -10.70457 -10.56766 -9.99259 -9.79842 -9.72383 -8.41060 -8.32294 -5.91691 -0.28902 -0.09473 0.27744 0.57765 1.37474 1.39658 1.42901 1.52819 2.24702 2.26035 2.45902 2.95079 3.09526 3.12843 3.16603 3.20255 3.48993 3.82625 3.95849 4.12206 4.19088 4.30735 4.34569 4.46981 4.58287 4.76250 4.81156 4.85381 4.91920 4.97166 5.00615 5.03219 5.09478 5.36307 5.42045 5.50659 5.70436 6.04196 6.47663 7.12863 7.42340 7.97762 8.65053 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.003185 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.536002 B = 8788.158757 C = 9921.619853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.013 3.987 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.341 4.341 8 H 0.072 0.928 9 N -0.414 5.414 10 C 0.441 3.559 11 O -0.610 6.610 12 C -0.163 4.163 13 C -0.154 4.154 14 S 0.112 5.888 15 C -0.181 4.181 16 C -0.152 4.152 17 C 0.102 3.898 18 F -0.136 7.136 19 C -0.124 4.124 20 C -0.097 4.097 21 C 0.080 3.920 22 F -0.142 7.142 23 C 0.102 3.898 24 C -0.178 4.178 25 C -0.159 4.159 26 H 0.275 0.725 27 H 0.165 0.835 28 H 0.183 0.817 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 -18.275 -2.458 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.090 0.910 9 N -0.129 5.129 10 C 0.236 3.764 11 O -0.503 6.503 12 C -0.195 4.195 13 C -0.289 4.289 14 S 0.368 5.632 15 C -0.293 4.293 16 C -0.175 4.175 17 C 0.081 3.919 18 F -0.114 7.114 19 C -0.145 4.145 20 C -0.117 4.117 21 C 0.055 3.945 22 F -0.120 7.120 23 C -0.002 4.002 24 C -0.215 4.215 25 C -0.197 4.197 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.200 0.800 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.196 0.804 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.119 0.881 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.510 -17.098 -1.906 17.270 hybrid contribution -0.584 0.459 -0.261 0.787 sum 0.927 -16.639 -2.167 16.805 Atomic orbital electron populations 1.69980 1.06435 1.28516 1.45700 1.25886 0.96297 1.01671 0.95358 0.85077 0.78275 0.77818 0.78435 1.20272 1.19006 1.19969 1.19611 0.93994 0.84707 1.48643 0.90959 1.43276 1.17839 1.04881 1.46886 1.17497 0.88060 0.85668 0.85172 1.90430 1.22157 1.84980 1.52714 1.21991 1.02374 0.90834 1.04327 1.26386 0.98551 1.01677 1.02249 1.87475 1.09586 0.91360 1.74818 1.23434 0.97511 1.04956 1.03448 1.21197 1.00785 0.92136 1.03409 1.17693 0.88447 0.87210 0.98549 1.91520 1.64210 1.71548 1.84132 1.21327 0.91427 1.02727 0.99028 1.21258 1.01751 0.89185 0.99493 1.17521 0.86863 0.89248 1.00832 1.91501 1.63386 1.72834 1.84304 1.21283 0.86850 1.04093 0.87997 1.23657 1.04155 0.92781 1.00936 1.22801 1.01801 0.95839 0.99284 0.91503 0.81747 0.80033 0.82591 0.80194 0.80363 0.87493 0.89346 0.84848 0.88099 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.73 10.52 21.67 0.23 -43.51 16 2 C 0.01 0.65 5.03 84.92 0.43 1.08 16 3 Si 0.98 41.90 29.57 68.60 2.03 43.93 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.34 -19.17 9.24 84.07 0.78 -18.40 16 8 H 0.07 4.42 7.32 -2.91 -0.02 4.40 16 9 N -0.41 -21.04 2.93 -623.45 -1.83 -22.87 16 10 C 0.44 21.69 7.19 84.96 0.61 22.31 16 11 O -0.61 -33.95 13.02 -4.81 -0.06 -34.01 16 12 C -0.16 -6.05 7.97 22.30 0.18 -5.87 16 13 C -0.15 -4.95 9.56 67.12 0.64 -4.30 16 14 S 0.11 4.19 18.44 -56.49 -1.04 3.15 16 15 C -0.18 -5.22 6.09 22.63 0.14 -5.09 16 16 C -0.15 -3.57 9.19 22.44 0.21 -3.36 16 17 C 0.10 2.03 7.29 22.35 0.16 2.20 16 18 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 19 C -0.12 -1.91 10.02 22.35 0.22 -1.69 16 20 C -0.10 -1.71 10.02 22.29 0.22 -1.49 16 21 C 0.08 2.13 7.28 22.49 0.16 2.29 16 22 F -0.14 -4.35 16.76 44.97 0.75 -3.60 16 23 C 0.10 4.31 3.38 44.99 0.15 4.46 16 24 C -0.18 -5.61 8.05 30.60 0.25 -5.37 16 25 C -0.16 -6.06 9.47 30.60 0.29 -5.77 16 26 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 27 H 0.17 5.05 5.75 -2.91 -0.02 5.03 16 28 H 0.18 4.17 5.25 -2.91 -0.02 4.15 16 29 H 0.16 3.22 5.05 -2.91 -0.01 3.21 16 30 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.11 4.75 7.50 -2.39 -0.02 4.73 16 33 H 0.09 2.85 7.30 -2.38 -0.02 2.83 16 34 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -67.28 326.64 6.44 -60.85 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.14 Total: 16.97 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.44 Total: -19.01 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.60 Total: -66.37 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.06 Total: -34.01 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 1.53 Total: -5.50 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.04 Total: 3.15 kcal Total: -67.28 6.44 -60.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493534042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.252 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds