Wall clock time and date at job start Tue Mar 31 2020 15:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00492 * 2 1 4 4 H 1.48492 * 109.46958 * 90.00063 * 3 2 1 5 5 H 1.48507 * 109.46804 * 209.99779 * 3 2 1 6 6 H 1.48490 * 109.47114 * 329.99790 * 3 2 1 7 7 C 1.37883 * 119.99174 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99815 * 188.31407 * 7 2 1 9 9 C 1.50694 * 120.00245 * 8.32502 * 7 2 1 10 10 C 1.53004 * 115.54809 * 274.96867 * 9 7 2 11 11 N 1.46505 * 109.47026 * 294.30288 * 10 9 7 12 12 S 1.65604 * 119.99853 * 158.34512 * 11 10 9 13 13 O 1.42100 * 106.39870 * 178.54680 * 12 11 10 14 14 O 1.42100 * 106.40305 * 311.46374 * 12 11 10 15 15 C 1.76193 * 107.21594 * 65.00538 * 12 11 10 16 16 C 1.38281 * 119.98551 * 114.99758 * 15 12 11 17 17 C 1.38214 * 120.14212 * 179.97438 * 16 15 12 18 18 C 1.38278 * 120.14262 * 0.03239 * 17 16 15 19 19 C 1.38502 * 120.03129 * 359.97438 * 18 17 16 20 20 C 1.38504 * 119.98496 * 294.71815 * 15 12 11 21 21 O 1.36496 * 131.53765 * 0.68438 * 20 15 12 22 22 C 1.43996 * 105.55835 * 162.24096 * 21 20 15 23 23 O 1.36502 * 131.53716 * 180.02562 * 19 18 17 24 24 C 1.53003 * 117.49998 * 129.29893 * 9 7 2 25 25 C 1.53007 * 117.50324 * 60.63742 * 9 7 2 26 26 H 0.96994 * 120.00802 * 176.02296 * 1 2 3 27 27 H 1.08995 * 109.47015 * 54.30407 * 10 9 7 28 28 H 1.08999 * 109.46929 * 174.30980 * 10 9 7 29 29 H 0.96995 * 120.00251 * 338.35307 * 11 10 9 30 30 H 1.07995 * 119.92900 * 0.02562 * 16 15 12 31 31 H 1.08003 * 119.92400 * 180.02562 * 17 16 15 32 32 H 1.08006 * 119.98309 * 179.97438 * 18 17 16 33 33 H 1.09002 * 110.56915 * 268.31418 * 22 21 20 34 34 H 1.08998 * 110.69308 * 145.51131 * 22 21 20 35 35 H 1.08996 * 117.49951 * 359.97438 * 24 9 7 36 36 H 1.09004 * 117.49679 * 145.01795 * 24 9 7 37 37 H 1.08999 * 117.49666 * 214.98156 * 25 9 7 38 38 H 1.09001 * 117.49382 * 359.97354 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5469 1.4399 -0.7000 6 1 1.4469 2.6526 -0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0759 -1.1992 0.1358 9 6 1.2627 -2.4924 -0.1878 10 6 0.6625 -3.0996 1.0818 11 7 1.7411 -3.4968 1.9902 12 16 1.4372 -3.6752 3.6083 13 8 2.6585 -4.0935 4.2022 14 8 0.7343 -2.5093 4.0155 15 6 0.3127 -5.0204 3.7826 16 6 0.7103 -6.1734 4.4343 17 6 -0.1693 -7.2305 4.5733 18 6 -1.4504 -7.1398 4.0607 19 6 -1.8554 -5.9880 3.4066 20 6 -0.9708 -4.9203 3.2719 21 8 -1.5993 -3.9163 2.5935 22 6 -2.7408 -4.5299 1.9659 23 8 -3.0409 -5.6489 2.8210 24 6 1.7871 -3.4575 -1.2529 25 6 0.4900 -2.6815 -1.4949 26 1 -0.4851 -0.8379 -0.0583 27 1 0.0275 -2.3619 1.5723 28 1 0.0675 -3.9746 0.8199 29 1 2.6332 -3.6552 1.6440 30 1 1.7099 -6.2478 4.8362 31 1 0.1447 -8.1292 5.0833 32 1 -2.1355 -7.9675 4.1704 33 1 -2.4884 -4.8713 0.9620 34 1 -3.5814 -3.8368 1.9335 35 1 2.6683 -3.1534 -1.8177 36 1 1.7042 -4.5252 -1.0493 37 1 -0.4457 -3.2388 -1.4502 38 1 0.5178 -1.8666 -2.2183 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548985856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:04 Heat of formation + Delta-G solvation = -78.685251 kcal Electronic energy + Delta-G solvation = -26563.159289 eV Core-core repulsion = 22693.002099 eV Total energy + Delta-G solvation = -3870.157190 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40912 -38.08152 -37.41383 -36.81718 -36.46743 -35.46066 -33.43479 -31.87131 -31.16184 -30.21898 -26.01243 -25.77888 -24.69418 -23.66251 -23.22419 -21.39835 -19.67961 -19.38128 -18.35493 -18.14397 -17.79363 -17.10718 -16.75667 -16.42572 -15.79125 -15.51569 -14.86190 -14.48703 -14.36760 -13.91775 -13.72771 -13.62523 -13.45506 -13.19232 -13.01696 -12.75528 -12.57427 -12.26653 -11.91255 -11.78662 -11.71584 -11.56024 -11.23171 -10.85848 -10.77423 -10.67956 -10.52857 -10.10031 -9.64336 -9.50534 -9.07278 -8.55822 -8.48619 -8.32610 -8.22845 -6.34830 -4.08164 0.45747 0.78149 0.88606 2.48797 3.07604 3.19617 3.47066 3.47941 3.49840 3.64079 3.99295 4.20105 4.47632 4.53401 4.58163 4.75176 4.87384 4.93591 5.00997 5.09505 5.16920 5.32341 5.49632 5.64950 5.74930 5.84528 5.95095 6.03775 6.09640 6.11201 6.14522 6.22896 6.48316 6.76863 6.82792 6.85645 7.17081 7.26508 7.60205 8.21990 8.41920 8.87490 9.65777 11.05154 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.005057 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.219920 B = 5535.692306 C = 6179.145548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.066 2.934 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.572 4.572 8 H 0.054 0.946 9 C 0.015 3.985 10 C 0.160 3.840 11 N -1.088 6.088 12 S 2.693 3.307 13 O -0.968 6.968 14 O -0.940 6.940 15 C -0.659 4.659 16 C -0.019 4.019 17 C -0.134 4.134 18 C -0.054 4.054 19 C 0.009 3.991 20 C 0.138 3.862 21 O -0.285 6.285 22 C 0.209 3.791 23 O -0.307 6.307 24 C -0.195 4.195 25 C -0.174 4.174 26 H 0.274 0.726 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.417 0.583 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 -15.398 5.103 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.610 4.610 8 H 0.072 0.928 9 C 0.013 3.987 10 C 0.034 3.966 11 N -0.850 5.850 12 S 2.779 3.221 13 O -0.959 6.959 14 O -0.929 6.929 15 C -0.744 4.744 16 C -0.039 4.039 17 C -0.153 4.153 18 C -0.073 4.073 19 C -0.036 4.036 20 C 0.090 3.910 21 O -0.199 6.199 22 C 0.098 3.902 23 O -0.223 6.223 24 C -0.233 4.233 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.253 0.747 30 H 0.174 0.826 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.836 -13.072 5.889 14.842 hybrid contribution -0.203 -2.311 -0.698 2.423 sum -4.039 -15.383 5.191 16.730 Atomic orbital electron populations 1.70717 1.06797 1.31372 1.44435 1.25743 0.96520 1.02298 0.93121 0.83590 0.74740 0.75266 0.76981 1.21283 1.21466 1.20991 1.21183 0.94575 0.89558 1.55640 0.92753 1.19275 0.98551 0.95615 0.85226 1.21071 0.87079 0.96303 0.92134 1.55021 1.19762 1.84212 1.25968 1.02041 0.73231 0.73782 0.73059 1.93537 1.42984 1.83562 1.75773 1.93642 1.74738 1.43990 1.80562 1.30229 1.08040 1.20827 1.15266 1.20826 1.00433 0.89862 0.92742 1.21033 0.92658 0.99831 1.01804 1.20318 0.96533 0.94229 0.96217 1.19837 0.84894 0.96157 1.02723 1.19136 0.92366 0.86055 0.93421 1.87653 1.39013 1.30134 1.63125 1.25854 0.88169 0.83705 0.92503 1.87378 1.27116 1.49030 1.58771 1.22905 0.97849 0.95468 1.07044 1.22762 0.93227 1.02145 1.03116 0.91514 0.89657 0.95538 0.74736 0.82579 0.83625 0.84148 0.88997 0.84140 0.89939 0.91476 0.91614 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.56 55.43 0.75 -25.24 16 2 C 0.03 0.82 5.38 -17.82 -0.10 0.72 16 3 Si 1.07 25.08 29.91 -169.99 -5.08 19.99 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.57 -15.23 8.74 -34.44 -0.30 -15.54 16 8 H 0.05 1.46 7.83 -52.49 -0.41 1.05 16 9 C 0.02 0.36 0.95 -155.66 -0.15 0.21 16 10 C 0.16 3.37 4.44 -4.04 -0.02 3.35 16 11 N -1.09 -20.81 5.88 -10.61 -0.06 -20.87 16 12 S 2.69 50.23 5.68 -107.50 -0.61 49.62 16 13 O -0.97 -18.18 16.97 -57.17 -0.97 -19.15 16 14 O -0.94 -21.48 17.32 -57.17 -0.99 -22.47 16 15 C -0.66 -10.37 5.90 -39.47 -0.23 -10.60 16 16 C -0.02 -0.24 9.54 -39.57 -0.38 -0.62 16 17 C -0.13 -1.32 10.04 -39.58 -0.40 -1.72 16 18 C -0.05 -0.58 10.06 -39.47 -0.40 -0.97 16 19 C 0.01 0.12 7.15 -39.09 -0.28 -0.16 16 20 C 0.14 2.21 6.31 -39.08 -0.25 1.96 16 21 O -0.28 -4.79 8.77 -45.68 -0.40 -5.19 16 22 C 0.21 2.57 8.89 101.05 0.90 3.47 16 23 O -0.31 -4.04 11.40 -45.70 -0.52 -4.56 16 24 C -0.20 -3.90 9.96 -26.69 -0.27 -4.16 16 25 C -0.17 -3.71 8.79 -26.69 -0.23 -3.94 16 26 H 0.27 7.71 6.22 -40.82 -0.25 7.45 16 27 H 0.09 2.05 6.71 -51.93 -0.35 1.71 16 28 H 0.03 0.49 7.23 -51.93 -0.38 0.11 16 29 H 0.42 7.39 8.70 -34.47 -0.30 7.09 16 30 H 0.16 1.66 7.33 -52.49 -0.38 1.28 16 31 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 335.95 15.07 5.06 5.06 Total: -1.00 -34.57 335.95 -9.17 -43.74 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.25 Total: 7.06 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -2.10 Total: -27.99 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.69 Total: -46.11 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.88 Total: -51.37 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 19.99 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.61 Total: 49.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.57 -9.17 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548985856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.944 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds