Wall clock time and date at job start Tue Mar 31 2020 14:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46498 * 109.47434 * 269.95901 * 10 9 7 12 12 C 1.34780 * 120.00630 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99371 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00130 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.46967 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00193 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99823 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00044 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99955 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00257 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47290 * 89.99683 * 20 18 16 22 22 H 1.48500 * 109.47109 * 209.99818 * 20 18 16 23 23 H 1.48504 * 109.46964 * 330.00157 * 20 18 16 24 24 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 25 25 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 28 28 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 30 30 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 31 31 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 32 32 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 33 33 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 34 34 H 0.97007 * 119.99406 * 359.97438 * 11 10 9 35 35 H 1.09002 * 109.47457 * 299.99719 * 14 12 11 36 36 H 1.08998 * 109.47247 * 59.99761 * 14 12 11 37 37 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5742 1.3949 12 6 5.0767 4.8936 1.6467 13 8 5.1420 5.6829 0.7281 14 6 5.1188 5.3882 3.0696 15 16 5.2700 7.1919 3.0771 16 6 5.2965 7.4895 4.8136 17 1 5.2281 6.6621 5.5043 18 6 5.4063 8.7872 5.2937 19 7 5.4255 9.0095 6.5909 20 14 5.5252 10.2182 4.0989 21 1 4.1615 10.7148 3.7840 22 1 6.3204 11.3114 4.7136 23 1 6.1881 9.7660 2.8494 24 16 2.5176 -1.4383 -0.0077 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3633 0.5182 -0.8875 27 1 -0.3633 0.5095 0.8925 28 1 1.8363 2.0648 0.0004 29 1 7.6343 1.1232 1.0287 30 1 7.8339 0.2635 -0.5170 31 1 7.4330 1.9977 -0.5085 32 1 5.8416 3.3840 -0.5017 33 1 4.0677 3.5312 -0.4997 34 1 4.9146 2.9428 2.1295 35 1 4.2018 5.0980 3.5824 36 1 5.9755 4.9500 3.5814 37 1 5.5019 9.9164 6.9264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590567811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:12 Heat of formation + Delta-G solvation = 51.647171 kcal Electronic energy + Delta-G solvation = -21685.304675 eV Core-core repulsion = 18295.844745 eV Total energy + Delta-G solvation = -3389.459930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.08417 -39.31607 -37.50765 -34.99015 -33.07181 -32.46780 -31.73923 -29.85956 -28.84877 -26.54540 -25.68161 -25.35717 -23.58983 -20.61047 -20.55572 -20.05105 -18.68592 -17.83957 -16.78639 -16.56359 -16.30016 -15.86820 -15.26136 -14.99828 -14.83328 -14.32912 -14.23028 -13.84913 -13.63915 -13.52731 -13.32150 -13.18108 -13.00116 -12.82724 -12.71731 -12.44884 -11.98714 -11.57700 -11.54568 -11.30011 -11.03592 -10.75732 -10.63467 -10.45348 -9.89759 -9.68448 -9.14213 -9.02418 -8.96157 -8.54428 -8.05346 -6.95645 -6.31610 -4.03898 0.44661 0.45687 1.15260 1.73170 2.10433 2.39235 2.77827 2.87244 3.29766 3.34919 3.47901 3.65434 3.89078 4.24924 4.30341 4.39456 4.45170 4.63956 4.70219 4.74309 4.95387 5.04912 5.07420 5.14164 5.19908 5.37219 5.41084 5.50821 5.55066 5.63993 5.71041 5.86086 5.96590 6.20505 6.33203 6.44997 7.34685 7.49025 7.91472 8.36869 8.39176 9.14360 10.77672 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002560 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.409873 B =10936.353574 C =11620.739432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.188 4.188 3 C 0.045 3.955 4 N -0.394 5.394 5 C 0.143 3.857 6 N -0.456 5.456 7 C 0.074 3.926 8 C -0.074 4.074 9 C -0.046 4.046 10 C 0.204 3.796 11 N -0.735 5.735 12 C 0.533 3.467 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.140 6.140 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 S 0.189 5.811 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.182 0.818 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 -21.952 -14.825 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.308 4.308 3 C -0.084 4.084 4 N -0.073 5.073 5 C -0.223 4.223 6 N -0.180 5.180 7 C -0.059 4.059 8 C -0.132 4.132 9 C -0.159 4.159 10 C 0.079 3.921 11 N -0.390 5.390 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.274 4.274 15 S 0.086 5.914 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 S 0.438 5.562 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.199 0.801 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.369 -22.517 -16.227 28.716 hybrid contribution -0.318 1.601 1.265 2.065 sum -7.687 -20.915 -14.962 26.840 Atomic orbital electron populations 1.20314 0.85118 1.03908 1.04019 1.23838 1.01523 0.94750 1.10652 1.20286 0.80079 1.01949 1.06058 1.43620 1.05055 1.07794 1.50800 1.26194 0.97967 0.86654 1.11458 1.70560 1.01745 1.24029 1.21653 1.20678 0.96354 0.87176 1.01680 1.20231 0.87168 1.02344 1.03421 1.21042 0.82241 0.94745 1.17871 1.19427 1.03631 0.84295 0.84711 1.46130 1.77383 1.07814 1.07679 1.20317 0.75160 0.81284 0.91342 1.90712 1.47731 1.54489 1.46277 1.23276 1.05873 1.03214 0.95079 1.84776 1.96667 0.98106 1.11834 1.22310 1.58442 0.97339 0.88864 0.89386 1.24718 0.93197 0.98336 0.95070 1.69939 1.47807 1.21954 1.11960 0.86732 0.79797 0.82470 0.82831 1.19222 1.19904 1.15884 1.84773 0.86946 1.02542 1.81902 0.90418 0.89687 0.89575 0.80137 0.90204 0.90374 0.90319 0.88623 0.90884 0.76506 0.88561 0.88297 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.36 36.01 0.37 0.11 16 2 C -0.19 -1.28 6.42 -36.00 -0.23 -1.51 16 3 C 0.04 0.37 11.11 -16.71 -0.19 0.19 16 4 N -0.39 -4.32 3.19 -59.60 -0.19 -4.51 16 5 C 0.14 1.70 8.93 -88.71 -0.79 0.91 16 6 N -0.46 -6.09 11.32 -9.77 -0.11 -6.20 16 7 C 0.07 0.87 7.06 -83.08 -0.59 0.28 16 8 C -0.07 -0.67 10.20 36.01 0.37 -0.30 16 9 C -0.05 -0.52 6.61 -80.75 -0.53 -1.05 16 10 C 0.20 2.32 6.00 -5.19 -0.03 2.29 16 11 N -0.73 -9.27 5.55 -61.47 -0.34 -9.61 16 12 C 0.53 9.08 7.85 -10.99 -0.09 8.99 16 13 O -0.52 -10.67 15.86 5.55 0.09 -10.58 16 14 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 15 S -0.14 -3.49 18.55 -107.50 -1.99 -5.49 16 16 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 17 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 18 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.43 13.97 55.49 0.78 -25.66 16 20 Si 0.86 21.57 27.74 -169.99 -4.71 16.85 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.23 -5.88 6.74 56.52 0.38 -5.50 16 24 S 0.19 1.55 23.35 -107.50 -2.51 -0.96 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.63 7.12 -51.93 -0.37 0.26 16 32 H 0.10 1.07 7.13 -51.92 -0.37 0.70 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.41 8.46 -40.82 -0.35 4.07 16 35 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -35.37 348.96 -9.48 -44.85 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.47 Total: 0.15 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.27 Total: -4.12 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.13 Total: -45.97 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -4.50 Total: -6.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.37 -9.48 -44.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590567811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.495 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds