Wall clock time and date at job start Tue Mar 31 2020 13:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34823 * 125.64078 * 2 1 4 4 C 1.40785 * 107.07094 * 179.78232 * 3 2 1 5 5 C 1.36254 * 106.72584 * 0.35197 * 4 3 2 6 6 C 1.47096 * 125.96181 * 179.91207 * 5 4 3 7 7 N 1.30492 * 125.48696 * 179.97438 * 6 5 4 8 8 C 1.31328 * 116.96933 * 180.21938 * 7 6 5 9 9 C 1.50701 * 122.06537 * 179.75325 * 8 7 6 10 10 S 1.81393 * 109.47513 * 269.72494 * 9 8 7 11 11 O 1.42108 * 109.46971 * 296.38373 * 10 9 8 12 12 C 1.81399 * 103.00232 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47004 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14 20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14 22 22 C 1.33692 * 115.87582 * 359.49438 * 8 7 6 23 23 S 1.76175 * 125.48537 * 359.68981 * 6 5 4 24 24 O 1.34269 * 125.63424 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46938 * 299.97943 * 1 2 3 27 27 H 1.09000 * 109.46983 * 59.97625 * 1 2 3 28 28 H 1.08002 * 126.45899 * 0.02562 * 3 2 1 29 29 H 1.07998 * 126.63080 * 180.24971 * 4 3 2 30 30 H 1.09001 * 109.47518 * 149.71845 * 9 8 7 31 31 H 1.09010 * 109.46708 * 29.72394 * 9 8 7 32 32 H 1.09000 * 109.47234 * 59.99874 * 12 10 9 33 33 H 1.09001 * 109.47232 * 299.99385 * 12 10 9 34 34 H 1.08993 * 109.46955 * 300.00150 * 13 12 10 35 35 H 1.09000 * 109.47050 * 59.99979 * 13 12 10 36 36 H 0.96992 * 120.00032 * 180.02562 * 17 16 14 37 37 H 1.08006 * 125.86286 * 180.26354 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0957 0.0000 4 6 3.6272 0.6473 0.0051 5 6 3.5833 -0.7145 0.0000 6 6 4.7456 -1.6162 0.0008 7 7 4.6928 -2.9200 -0.0037 8 6 5.8382 -3.5625 0.0023 9 6 5.9112 -5.0677 0.0036 10 16 5.9402 -5.6703 1.7143 11 8 7.1194 -5.2087 2.3591 12 6 6.0268 -7.4708 1.5113 13 6 6.0596 -8.1382 2.8877 14 6 6.1308 -9.6340 2.7191 15 1 6.1503 -10.0655 1.7292 16 6 6.1701 -10.4518 3.8284 17 7 6.1458 -9.9264 5.0339 18 14 6.2591 -12.3059 3.6194 19 1 7.4900 -12.6608 2.8684 20 1 6.2908 -12.9537 4.9553 21 1 5.0679 -12.7772 2.8684 22 6 6.9355 -2.7988 0.0019 23 16 6.4329 -1.1096 0.0008 24 8 2.2893 -1.0913 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.9607 2.1234 0.0004 29 1 4.5140 1.2637 0.0103 30 1 6.8177 -5.3880 -0.5099 31 1 5.0398 -5.4741 -0.5101 32 1 6.9303 -7.7313 0.9600 33 1 5.1523 -7.8168 0.9602 34 1 6.9341 -7.7922 3.4385 35 1 5.1563 -7.8778 3.4394 36 1 6.1738 -10.5017 5.8143 37 1 7.9549 -3.1558 0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593208810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:20 Heat of formation + Delta-G solvation = -10.512506 kcal Electronic energy + Delta-G solvation = -21155.111953 eV Core-core repulsion = 17730.663826 eV Total energy + Delta-G solvation = -3424.448127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.58638 -40.80268 -36.80240 -35.74645 -34.29344 -34.07002 -32.89410 -32.26453 -29.15789 -28.32600 -27.33262 -24.87191 -23.22145 -22.94545 -21.58978 -20.44363 -19.28680 -18.80845 -18.34394 -17.84674 -17.37630 -16.64898 -16.52749 -16.21852 -15.81869 -15.66005 -15.24088 -14.85471 -14.52701 -14.40370 -14.30809 -13.89734 -13.87192 -13.82718 -13.68637 -13.49967 -13.07819 -12.80503 -12.72222 -12.66607 -12.50873 -12.02384 -11.96718 -11.57192 -11.31095 -11.02038 -10.92500 -10.70487 -10.60290 -10.14367 -9.21588 -8.87556 -8.22287 -6.36015 -0.89910 -0.10530 0.28969 0.45610 0.83526 1.39025 1.42629 1.48420 1.50836 1.74577 1.95842 1.96812 2.39391 2.65661 2.91558 3.09655 3.61664 3.85112 3.94915 3.95785 4.13019 4.26642 4.36759 4.45920 4.53320 4.61940 4.71340 4.77885 4.80110 4.88996 4.99548 5.04074 5.18980 5.40262 5.48656 5.54668 5.75181 6.04362 6.15524 6.49970 6.78639 7.33361 8.88729 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.002399 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.540590 B =11669.725627 C =12629.530633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.007 3.993 3 C -0.216 4.216 4 C -0.149 4.149 5 C 0.007 3.993 6 C 0.116 3.884 7 N -0.471 5.471 8 C 0.079 3.921 9 C -0.370 4.370 10 S 1.266 4.734 11 O -0.905 6.905 12 C -0.415 4.415 13 C 0.036 3.964 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.004 4.004 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.258 1.258 22 C -0.261 4.261 23 S 0.197 5.803 24 O -0.176 6.176 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.187 0.813 29 H 0.176 0.824 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.067 0.933 33 H 0.140 0.860 34 H -0.023 1.023 35 H 0.021 0.979 36 H 0.266 0.734 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 25.633 -14.756 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C -0.235 4.235 4 C -0.172 4.172 5 C -0.046 4.046 6 C -0.158 4.158 7 N -0.187 5.187 8 C -0.054 4.054 9 C -0.509 4.509 10 S 1.468 4.532 11 O -0.900 6.900 12 C -0.553 4.553 13 C -0.002 4.002 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.402 4.402 23 S 0.453 5.547 24 O -0.073 6.073 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.204 0.796 29 H 0.193 0.807 30 H 0.129 0.871 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.158 0.842 34 H -0.005 1.005 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.881 26.509 -13.747 31.782 hybrid contribution 2.533 -2.666 -0.750 3.753 sum -8.348 23.844 -14.497 29.127 Atomic orbital electron populations 1.20627 0.81994 1.05050 1.05783 1.23646 0.95846 0.83498 1.01603 1.21869 0.91103 1.01059 1.09447 1.22195 1.00518 0.91334 1.03163 1.18976 0.80575 0.91470 1.13579 1.24567 0.95359 0.91115 1.04724 1.66552 1.29317 1.06179 1.16608 1.19241 0.86726 0.96274 1.03161 1.26275 1.10243 0.93838 1.20540 1.70331 1.10986 0.86033 0.85812 1.92969 1.54469 1.76829 1.65758 1.27506 1.07387 1.16262 1.04159 1.18641 0.95625 0.95387 0.90550 1.21618 1.50978 0.92287 0.93223 0.91512 1.26080 0.94602 1.04657 0.94840 1.70101 1.51197 1.37509 0.98573 0.85423 0.79293 0.78407 0.77467 1.19670 1.20807 1.18268 1.27203 1.04852 0.96280 1.11908 1.84364 0.97456 1.04955 1.67914 1.84139 1.15609 1.36268 1.71256 0.90488 0.87266 0.87108 0.79554 0.80706 0.87147 0.82098 0.91377 0.84197 1.00466 0.96086 0.92559 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.41 71.24 0.74 0.18 16 2 C 0.01 0.11 7.31 24.90 0.18 0.29 16 3 C -0.22 -2.82 10.78 22.11 0.24 -2.59 16 4 C -0.15 -2.44 10.64 22.43 0.24 -2.21 16 5 C 0.01 0.16 7.24 24.13 0.17 0.33 16 6 C 0.12 2.97 7.50 87.22 0.65 3.63 16 7 N -0.47 -13.81 10.57 -178.36 -1.89 -15.70 16 8 C 0.08 2.27 5.95 41.60 0.25 2.51 16 9 C -0.37 -9.85 6.31 71.24 0.45 -9.40 16 10 S 1.27 43.85 13.14 -56.49 -0.74 43.11 16 11 O -0.90 -42.43 18.14 -148.98 -2.70 -45.14 16 12 C -0.41 -16.55 5.86 71.98 0.42 -16.13 16 13 C 0.04 1.96 4.98 29.85 0.15 2.11 16 14 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 15 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 16 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 17 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 18 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 C -0.26 -6.80 11.07 66.79 0.74 -6.06 16 23 S 0.20 4.06 23.19 -56.49 -1.31 2.75 16 24 O -0.18 -4.20 10.68 -6.90 -0.07 -4.27 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 29 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.11 2.74 8.11 -2.39 -0.02 2.72 16 31 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 34 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -83.81 355.96 1.61 -82.20 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.08 Total: 6.35 kcal Atomic # 6 Polarization: -63.04 SS G_CDS: 4.93 Total: -58.10 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.60 Total: -73.54 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -2.78 Total: -49.41 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 47.91 SS G_CDS: -2.05 Total: 45.86 kcal Total: -83.81 1.61 -82.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593208810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal (2) G-P(sol) polarization free energy of solvation -83.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds