Wall clock time and date at job start Tue Mar 31 2020 13:45:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.34823 * 125.64078 * 2 1
4 4 C 1.40785 * 107.07094 * 179.78232 * 3 2 1
5 5 C 1.36254 * 106.72584 * 0.35197 * 4 3 2
6 6 C 1.47096 * 125.96181 * 179.91207 * 5 4 3
7 7 N 1.30492 * 125.48696 * 179.97438 * 6 5 4
8 8 C 1.31328 * 116.96933 * 180.21938 * 7 6 5
9 9 C 1.50701 * 122.06537 * 179.75325 * 8 7 6
10 10 S 1.81393 * 109.47513 * 269.72494 * 9 8 7
11 11 O 1.42108 * 109.46971 * 296.38373 * 10 9 8
12 12 C 1.81399 * 103.00232 * 179.97438 * 10 9 8
13 13 C 1.53006 * 109.47004 * 179.97438 * 12 10 9
14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 10
15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12
16 16 C 1.37874 * 120.00270 * 180.02562 * 14 13 12
17 17 N 1.31522 * 119.99834 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00496 * 180.02562 * 16 14 13
19 19 H 1.48494 * 109.47325 * 59.99531 * 18 16 14
20 20 H 1.48496 * 109.47425 * 179.97438 * 18 16 14
21 21 H 1.48505 * 109.47183 * 299.99726 * 18 16 14
22 22 C 1.33692 * 115.87582 * 359.49438 * 8 7 6
23 23 S 1.76175 * 125.48537 * 359.68981 * 6 5 4
24 24 O 1.34269 * 125.63424 * 179.97438 * 2 1 3
25 25 H 1.09001 * 109.47473 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.46938 * 299.97943 * 1 2 3
27 27 H 1.09000 * 109.46983 * 59.97625 * 1 2 3
28 28 H 1.08002 * 126.45899 * 0.02562 * 3 2 1
29 29 H 1.07998 * 126.63080 * 180.24971 * 4 3 2
30 30 H 1.09001 * 109.47518 * 149.71845 * 9 8 7
31 31 H 1.09010 * 109.46708 * 29.72394 * 9 8 7
32 32 H 1.09000 * 109.47234 * 59.99874 * 12 10 9
33 33 H 1.09001 * 109.47232 * 299.99385 * 12 10 9
34 34 H 1.08993 * 109.46955 * 300.00150 * 13 12 10
35 35 H 1.09000 * 109.47050 * 59.99979 * 13 12 10
36 36 H 0.96992 * 120.00032 * 180.02562 * 17 16 14
37 37 H 1.08006 * 125.86286 * 180.26354 * 22 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2926 1.0957 0.0000
4 6 3.6272 0.6473 0.0051
5 6 3.5833 -0.7145 0.0000
6 6 4.7456 -1.6162 0.0008
7 7 4.6928 -2.9200 -0.0037
8 6 5.8382 -3.5625 0.0023
9 6 5.9112 -5.0677 0.0036
10 16 5.9402 -5.6703 1.7143
11 8 7.1194 -5.2087 2.3591
12 6 6.0268 -7.4708 1.5113
13 6 6.0596 -8.1382 2.8877
14 6 6.1308 -9.6340 2.7191
15 1 6.1503 -10.0655 1.7292
16 6 6.1701 -10.4518 3.8284
17 7 6.1458 -9.9264 5.0339
18 14 6.2591 -12.3059 3.6194
19 1 7.4900 -12.6608 2.8684
20 1 6.2908 -12.9537 4.9553
21 1 5.0679 -12.7772 2.8684
22 6 6.9355 -2.7988 0.0019
23 16 6.4329 -1.1096 0.0008
24 8 2.2893 -1.0913 0.0005
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3633 0.5135 0.8902
27 1 -0.3633 0.5142 -0.8898
28 1 1.9607 2.1234 0.0004
29 1 4.5140 1.2637 0.0103
30 1 6.8177 -5.3880 -0.5099
31 1 5.0398 -5.4741 -0.5101
32 1 6.9303 -7.7313 0.9600
33 1 5.1523 -7.8168 0.9602
34 1 6.9341 -7.7922 3.4385
35 1 5.1563 -7.8778 3.4394
36 1 6.1738 -10.5017 5.8143
37 1 7.9549 -3.1558 0.0023
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000593208810.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:20
Heat of formation + Delta-G solvation = -10.512506 kcal
Electronic energy + Delta-G solvation = -21155.111953 eV
Core-core repulsion = 17730.663826 eV
Total energy + Delta-G solvation = -3424.448127 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 325.059 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-43.58638 -40.80268 -36.80240 -35.74645 -34.29344 -34.07002 -32.89410 -32.26453
-29.15789 -28.32600 -27.33262 -24.87191 -23.22145 -22.94545 -21.58978 -20.44363
-19.28680 -18.80845 -18.34394 -17.84674 -17.37630 -16.64898 -16.52749 -16.21852
-15.81869 -15.66005 -15.24088 -14.85471 -14.52701 -14.40370 -14.30809 -13.89734
-13.87192 -13.82718 -13.68637 -13.49967 -13.07819 -12.80503 -12.72222 -12.66607
-12.50873 -12.02384 -11.96718 -11.57192 -11.31095 -11.02038 -10.92500 -10.70487
-10.60290 -10.14367 -9.21588 -8.87556 -8.22287 -6.36015 -0.89910 -0.10530
0.28969 0.45610 0.83526 1.39025 1.42629 1.48420 1.50836 1.74577
1.95842 1.96812 2.39391 2.65661 2.91558 3.09655 3.61664 3.85112
3.94915 3.95785 4.13019 4.26642 4.36759 4.45920 4.53320 4.61940
4.71340 4.77885 4.80110 4.88996 4.99548 5.04074 5.18980 5.40262
5.48656 5.54668 5.75181 6.04362 6.15524 6.49970 6.78639 7.33361
8.88729
Molecular weight = 325.06amu
Principal moments of inertia in cm(-1)
A = 0.019568 B = 0.002399 C = 0.002216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1430.540590 B =11669.725627 C =12629.530633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.007 3.993
3 C -0.216 4.216
4 C -0.149 4.149
5 C 0.007 3.993
6 C 0.116 3.884
7 N -0.471 5.471
8 C 0.079 3.921
9 C -0.370 4.370
10 S 1.266 4.734
11 O -0.905 6.905
12 C -0.415 4.415
13 C 0.036 3.964
14 C -0.542 4.542
15 H 0.067 0.933
16 C -0.004 4.004
17 N -0.934 5.934
18 Si 0.970 3.030
19 H -0.272 1.272
20 H -0.283 1.283
21 H -0.258 1.258
22 C -0.261 4.261
23 S 0.197 5.803
24 O -0.176 6.176
25 H 0.076 0.924
26 H 0.109 0.891
27 H 0.111 0.889
28 H 0.187 0.813
29 H 0.176 0.824
30 H 0.110 0.890
31 H 0.161 0.839
32 H 0.067 0.933
33 H 0.140 0.860
34 H -0.023 1.023
35 H 0.021 0.979
36 H 0.266 0.734
37 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.876 25.633 -14.756 31.513
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.046 4.046
3 C -0.235 4.235
4 C -0.172 4.172
5 C -0.046 4.046
6 C -0.158 4.158
7 N -0.187 5.187
8 C -0.054 4.054
9 C -0.509 4.509
10 S 1.468 4.532
11 O -0.900 6.900
12 C -0.553 4.553
13 C -0.002 4.002
14 C -0.581 4.581
15 H 0.085 0.915
16 C -0.202 4.202
17 N -0.574 5.574
18 Si 0.794 3.206
19 H -0.197 1.197
20 H -0.208 1.208
21 H -0.183 1.183
22 C -0.402 4.402
23 S 0.453 5.547
24 O -0.073 6.073
25 H 0.095 0.905
26 H 0.127 0.873
27 H 0.129 0.871
28 H 0.204 0.796
29 H 0.193 0.807
30 H 0.129 0.871
31 H 0.179 0.821
32 H 0.086 0.914
33 H 0.158 0.842
34 H -0.005 1.005
35 H 0.039 0.961
36 H 0.074 0.926
37 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -10.881 26.509 -13.747 31.782
hybrid contribution 2.533 -2.666 -0.750 3.753
sum -8.348 23.844 -14.497 29.127
Atomic orbital electron populations
1.20627 0.81994 1.05050 1.05783 1.23646 0.95846 0.83498 1.01603
1.21869 0.91103 1.01059 1.09447 1.22195 1.00518 0.91334 1.03163
1.18976 0.80575 0.91470 1.13579 1.24567 0.95359 0.91115 1.04724
1.66552 1.29317 1.06179 1.16608 1.19241 0.86726 0.96274 1.03161
1.26275 1.10243 0.93838 1.20540 1.70331 1.10986 0.86033 0.85812
1.92969 1.54469 1.76829 1.65758 1.27506 1.07387 1.16262 1.04159
1.18641 0.95625 0.95387 0.90550 1.21618 1.50978 0.92287 0.93223
0.91512 1.26080 0.94602 1.04657 0.94840 1.70101 1.51197 1.37509
0.98573 0.85423 0.79293 0.78407 0.77467 1.19670 1.20807 1.18268
1.27203 1.04852 0.96280 1.11908 1.84364 0.97456 1.04955 1.67914
1.84139 1.15609 1.36268 1.71256 0.90488 0.87266 0.87108 0.79554
0.80706 0.87147 0.82098 0.91377 0.84197 1.00466 0.96086 0.92559
0.79468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.56 10.41 71.24 0.74 0.18 16
2 C 0.01 0.11 7.31 24.90 0.18 0.29 16
3 C -0.22 -2.82 10.78 22.11 0.24 -2.59 16
4 C -0.15 -2.44 10.64 22.43 0.24 -2.21 16
5 C 0.01 0.16 7.24 24.13 0.17 0.33 16
6 C 0.12 2.97 7.50 87.22 0.65 3.63 16
7 N -0.47 -13.81 10.57 -178.36 -1.89 -15.70 16
8 C 0.08 2.27 5.95 41.60 0.25 2.51 16
9 C -0.37 -9.85 6.31 71.24 0.45 -9.40 16
10 S 1.27 43.85 13.14 -56.49 -0.74 43.11 16
11 O -0.90 -42.43 18.14 -148.98 -2.70 -45.14 16
12 C -0.41 -16.55 5.86 71.98 0.42 -16.13 16
13 C 0.04 1.96 4.98 29.85 0.15 2.11 16
14 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16
15 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16
16 C 0.00 -0.22 5.46 84.65 0.46 0.24 16
17 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16
18 Si 0.97 44.62 29.54 68.60 2.03 46.65 16
19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16
22 C -0.26 -6.80 11.07 66.79 0.74 -6.06 16
23 S 0.20 4.06 23.19 -56.49 -1.31 2.75 16
24 O -0.18 -4.20 10.68 -6.90 -0.07 -4.27 16
25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
26 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16
27 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16
28 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16
29 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16
30 H 0.11 2.74 8.11 -2.39 -0.02 2.72 16
31 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16
32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16
33 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16
34 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16
35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16
36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16
37 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16
Total: -1.00 -83.81 355.96 1.61 -82.20
By element:
Atomic # 1 Polarization: 5.26 SS G_CDS: 1.08 Total: 6.35 kcal
Atomic # 6 Polarization: -63.04 SS G_CDS: 4.93 Total: -58.10 kcal
Atomic # 7 Polarization: -71.94 SS G_CDS: -1.60 Total: -73.54 kcal
Atomic # 8 Polarization: -46.63 SS G_CDS: -2.78 Total: -49.41 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Atomic # 16 Polarization: 47.91 SS G_CDS: -2.05 Total: 45.86 kcal
Total: -83.81 1.61 -82.20 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593208810.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal
(2) G-P(sol) polarization free energy of solvation -83.809 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds