Wall clock time and date at job start Tue Mar 31 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47390 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47074 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.47314 * 60.00259 * 3 2 1 7 7 C 1.38796 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99759 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00059 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99817 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99564 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.21698 * 325.55692 * 14 13 11 16 16 C 1.52720 * 109.25088 * 206.11067 * 14 13 11 17 17 C 1.53323 * 108.39777 * 188.69593 * 16 14 13 18 18 C 1.52743 * 108.36565 * 69.90558 * 17 16 14 19 19 C 1.50632 * 110.57245 * 308.85563 * 18 17 16 20 20 C 1.38918 * 117.73203 * 197.62878 * 19 18 17 21 21 C 1.37911 * 120.56977 * 180.26527 * 20 19 18 22 22 C 1.38384 * 119.74821 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.12453 * 179.90304 * 22 21 20 24 24 C 1.38046 * 119.75130 * 359.76788 * 22 21 20 25 25 C 1.37675 * 122.56363 * 17.70214 * 19 18 17 26 26 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47053 * 60.00336 * 10 9 7 28 28 H 1.09002 * 109.47373 * 300.00253 * 10 9 7 29 29 H 0.96995 * 120.00117 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.68186 * 68.96465 * 16 14 13 31 31 H 1.09006 * 109.71027 * 308.44116 * 16 14 13 32 32 H 1.09003 * 109.68890 * 310.19223 * 17 16 14 33 33 H 1.09000 * 109.69007 * 189.62595 * 17 16 14 34 34 H 1.09005 * 109.25467 * 188.56992 * 18 17 16 35 35 H 1.09002 * 109.25250 * 69.13681 * 18 17 16 36 36 H 1.08000 * 119.71567 * 0.23969 * 20 19 18 37 37 H 1.07997 * 120.12655 * 179.97438 * 21 20 19 38 38 H 1.07991 * 119.73741 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0019 15 1 1.4091 -7.7537 0.5792 16 6 3.3657 -8.6409 0.6333 17 6 2.9099 -10.0903 0.4270 18 6 3.0429 -10.4301 -1.0562 19 6 2.3642 -9.3844 -1.9018 20 6 2.0623 -9.7130 -3.2174 21 6 1.4460 -8.7981 -4.0451 22 6 1.1248 -7.5419 -3.5615 23 17 0.3512 -6.3818 -4.5956 24 6 1.4193 -7.2158 -2.2528 25 6 2.0417 -8.1360 -1.4192 26 1 -0.4850 0.8401 0.0004 27 1 3.1245 -3.7313 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 3.4429 -8.4286 1.6996 31 1 4.3349 -8.4898 0.1579 32 1 1.8699 -10.1957 0.7359 33 1 3.5377 -10.7599 1.0148 34 1 2.5826 -11.3999 -1.2455 35 1 4.0993 -10.4765 -1.3210 36 1 2.3128 -10.6932 -3.5954 37 1 1.2150 -9.0609 -5.0668 38 1 1.1681 -6.2356 -1.8755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600803173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:10 Heat of formation + Delta-G solvation = -32.546718 kcal Electronic energy + Delta-G solvation = -22399.074775 eV Core-core repulsion = 18971.627467 eV Total energy + Delta-G solvation = -3427.447308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72580 -38.84210 -36.98356 -35.85060 -34.22317 -32.42654 -31.61498 -30.32865 -29.49303 -27.85539 -25.48412 -23.79419 -23.04392 -22.22609 -20.38531 -19.75326 -17.85807 -17.15505 -16.43506 -16.31443 -15.68989 -15.53040 -15.06354 -14.80184 -14.29301 -14.15734 -13.98206 -13.58905 -13.37041 -13.19876 -12.99635 -12.76022 -12.50597 -12.35556 -12.04020 -11.82029 -11.38453 -11.06917 -11.06230 -11.01765 -10.93169 -10.85815 -10.72184 -10.70811 -9.80576 -9.49453 -9.09420 -9.04611 -8.87058 -8.54528 -8.23713 -6.49774 -6.21603 -3.92027 1.04516 1.19261 2.22441 2.97603 2.99711 3.21885 3.27710 3.32008 3.49600 3.72623 4.20220 4.34809 4.40325 4.62264 4.70009 4.77969 4.88725 5.05130 5.10196 5.13874 5.25328 5.27920 5.34332 5.47363 5.54644 5.59044 5.66706 5.75534 5.83183 5.83801 5.87392 5.97981 6.12307 6.19010 6.25395 6.38368 6.59080 6.75385 7.59985 7.63556 8.35556 8.52159 9.24033 10.85830 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.003441 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.325227 B = 8136.212427 C = 9496.243718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.532 3.468 12 O -0.512 6.512 13 N -0.733 5.733 14 C 0.187 3.813 15 H 0.102 0.898 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.080 4.080 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.040 4.040 23 Cl -0.066 7.066 24 C -0.093 4.093 25 C -0.081 4.081 26 H 0.268 0.732 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.400 0.600 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 -22.779 -3.398 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.306 4.306 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.386 5.386 14 C 0.082 3.918 15 H 0.120 0.880 16 C -0.163 4.163 17 C -0.155 4.155 18 C -0.117 4.117 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.067 4.067 23 Cl -0.037 7.037 24 C -0.111 4.111 25 C -0.083 4.083 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.235 0.765 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.541 -22.878 -3.479 24.048 hybrid contribution 2.274 1.552 -0.305 2.770 sum 8.815 -21.326 -3.785 23.385 Atomic orbital electron populations 1.70025 1.05939 1.27345 1.46913 1.24984 0.95014 0.99012 0.94529 0.86127 0.79601 0.81927 0.77905 1.19615 1.20566 1.20564 1.22905 0.94938 0.91649 1.58875 0.90886 1.85404 1.04653 0.96296 1.96711 1.23559 1.06770 0.95228 1.05036 1.20394 0.86663 0.86426 0.74650 1.90716 1.15220 1.85472 1.47224 1.46158 1.10113 1.04806 1.77561 1.19667 0.98760 0.81450 0.91888 0.88032 1.21811 0.98468 0.94548 1.01433 1.21521 1.02445 0.95744 0.95766 1.20501 1.00405 0.96771 0.94036 1.19670 0.98722 0.94328 0.94425 1.21015 0.99979 0.99434 0.93205 1.20978 0.99521 0.91963 1.00433 1.20912 1.01434 0.91706 0.92601 1.98392 1.79581 1.58930 1.66833 1.21661 0.96197 1.01823 0.91463 1.19954 0.99005 0.93146 0.96174 0.92237 0.89099 0.89167 0.76542 0.90372 0.90896 0.91063 0.90736 0.90487 0.90382 0.85416 0.85192 0.83299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.16 -3.08 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.54 6.36 -10.98 -0.07 9.47 16 12 O -0.51 -11.06 13.70 5.56 0.08 -10.98 16 13 N -0.73 -9.48 4.83 -55.10 -0.27 -9.75 16 14 C 0.19 2.19 2.59 -69.26 -0.18 2.01 16 15 H 0.10 1.38 7.54 -51.93 -0.39 0.99 16 16 C -0.12 -0.98 5.43 -26.71 -0.15 -1.12 16 17 C -0.12 -0.78 5.98 -26.70 -0.16 -0.94 16 18 C -0.08 -0.56 5.67 -28.05 -0.16 -0.71 16 19 C -0.07 -0.72 5.74 -104.61 -0.60 -1.32 16 20 C -0.12 -1.15 9.60 -39.45 -0.38 -1.53 16 21 C -0.11 -1.25 9.84 -39.65 -0.39 -1.64 16 22 C -0.04 -0.57 6.31 -39.60 -0.25 -0.82 16 23 Cl -0.07 -0.99 28.96 -51.86 -1.50 -2.49 16 24 C -0.09 -1.43 8.81 -39.41 -0.35 -1.78 16 25 C -0.08 -1.02 5.55 -104.61 -0.58 -1.60 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.13 0.88 8.05 -52.49 -0.42 0.46 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 2.75 4.49 -52.49 -0.24 2.52 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -33.78 343.09 -10.61 -44.39 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.74 Total: 2.16 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.84 Total: -15.75 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.47 Total: -35.17 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.78 -10.61 -44.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600803173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.840 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds