Wall clock time and date at job start Tue Mar 31 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00038 * 2 1 4 4 H 1.48501 * 109.47390 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47074 * 300.00262 * 3 2 1 6 6 H 1.48503 * 109.47314 * 60.00259 * 3 2 1 7 7 C 1.38796 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99759 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00059 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99817 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99564 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.21698 * 325.55692 * 14 13 11 16 16 C 1.52720 * 109.25088 * 206.11067 * 14 13 11 17 17 C 1.53323 * 108.39777 * 188.69593 * 16 14 13 18 18 C 1.52743 * 108.36565 * 69.90558 * 17 16 14 19 19 C 1.50632 * 110.57245 * 308.85563 * 18 17 16 20 20 C 1.38918 * 117.73203 * 197.62878 * 19 18 17 21 21 C 1.37911 * 120.56977 * 180.26527 * 20 19 18 22 22 C 1.38384 * 119.74821 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 120.12453 * 179.90304 * 22 21 20 24 24 C 1.38046 * 119.75130 * 359.76788 * 22 21 20 25 25 C 1.37675 * 122.56363 * 17.70214 * 19 18 17 26 26 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.47053 * 60.00336 * 10 9 7 28 28 H 1.09002 * 109.47373 * 300.00253 * 10 9 7 29 29 H 0.96995 * 120.00117 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.68186 * 68.96465 * 16 14 13 31 31 H 1.09006 * 109.71027 * 308.44116 * 16 14 13 32 32 H 1.09003 * 109.68890 * 310.19223 * 17 16 14 33 33 H 1.09000 * 109.69007 * 189.62595 * 17 16 14 34 34 H 1.09005 * 109.25467 * 188.56992 * 18 17 16 35 35 H 1.09002 * 109.25250 * 69.13681 * 18 17 16 36 36 H 1.08000 * 119.71567 * 0.23969 * 20 19 18 37 37 H 1.07997 * 120.12655 * 179.97438 * 21 20 19 38 38 H 1.07991 * 119.73741 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0019 15 1 1.4091 -7.7537 0.5792 16 6 3.3657 -8.6409 0.6333 17 6 2.9099 -10.0903 0.4270 18 6 3.0429 -10.4301 -1.0562 19 6 2.3642 -9.3844 -1.9018 20 6 2.0623 -9.7130 -3.2174 21 6 1.4460 -8.7981 -4.0451 22 6 1.1248 -7.5419 -3.5615 23 17 0.3512 -6.3818 -4.5956 24 6 1.4193 -7.2158 -2.2528 25 6 2.0417 -8.1360 -1.4192 26 1 -0.4850 0.8401 0.0004 27 1 3.1245 -3.7313 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.8010 -6.1835 -0.0004 30 1 3.4429 -8.4286 1.6996 31 1 4.3349 -8.4898 0.1579 32 1 1.8699 -10.1957 0.7359 33 1 3.5377 -10.7599 1.0148 34 1 2.5826 -11.3999 -1.2455 35 1 4.0993 -10.4765 -1.3210 36 1 2.3128 -10.6932 -3.5954 37 1 1.2150 -9.0609 -5.0668 38 1 1.1681 -6.2356 -1.8755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600803173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:10 Heat of formation + Delta-G solvation = -53.592943 kcal Electronic energy + Delta-G solvation = -22399.987408 eV Core-core repulsion = 18971.627467 eV Total energy + Delta-G solvation = -3428.359941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73503 -40.08578 -37.97268 -36.85274 -35.24978 -34.59796 -32.72582 -31.14030 -30.78946 -28.88910 -27.65858 -24.63562 -23.83365 -23.16260 -21.72725 -20.55507 -19.79964 -18.18260 -17.88579 -17.40461 -16.89647 -16.59666 -16.51675 -16.33305 -15.82207 -15.16607 -14.96762 -14.62603 -14.53425 -14.49171 -14.29030 -13.84780 -13.42124 -13.36128 -13.21521 -13.17485 -12.93100 -12.75460 -12.61612 -12.21452 -11.94036 -11.81200 -11.74683 -11.53297 -11.48448 -11.17169 -10.96973 -10.28834 -10.22931 -9.85433 -9.45852 -8.67523 -8.36148 -6.13907 0.13021 0.24799 1.17163 1.25562 1.39892 1.45502 1.55295 1.56862 2.21512 2.26272 2.63828 2.98167 3.30254 3.55491 3.66359 3.86562 3.94013 4.00572 4.07708 4.21169 4.24030 4.27652 4.45552 4.47869 4.54935 4.64865 4.77904 4.90980 4.96249 4.98199 5.11170 5.22232 5.28030 5.35807 5.39149 5.40518 5.47229 5.59568 5.88036 6.18448 6.46305 7.05304 7.20038 8.73285 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.003441 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.325227 B = 8136.212427 C = 9496.243718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.131 4.131 11 C 0.535 3.465 12 O -0.556 6.556 13 N -0.708 5.708 14 C 0.186 3.814 15 H 0.075 0.925 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.078 4.078 19 C -0.062 4.062 20 C -0.108 4.108 21 C -0.110 4.110 22 C -0.061 4.061 23 Cl -0.089 7.089 24 C -0.125 4.125 25 C -0.093 4.093 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.417 0.583 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.150 0.850 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.177 -25.446 -3.287 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.283 4.283 11 C 0.321 3.679 12 O -0.434 6.434 13 N -0.362 5.362 14 C 0.082 3.918 15 H 0.093 0.907 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.115 4.115 19 C -0.063 4.063 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.088 4.088 23 Cl -0.060 7.060 24 C -0.144 4.144 25 C -0.094 4.094 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.254 0.746 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.987 -25.584 -3.364 27.669 hybrid contribution 1.253 2.195 -0.347 2.551 sum 11.240 -23.388 -3.711 26.213 Atomic orbital electron populations 1.70191 1.07980 1.28529 1.48066 1.26120 0.95951 1.03300 0.93723 0.84914 0.78636 0.76350 0.78099 1.17996 1.20033 1.19770 1.23239 0.95328 0.92073 1.58797 0.89994 1.85579 1.10259 0.99109 1.97021 1.23388 1.03711 0.94543 1.06609 1.20056 0.86423 0.86683 0.74706 1.90704 1.17182 1.85901 1.49590 1.45903 1.10345 1.04553 1.75370 1.19852 0.99233 0.80956 0.91774 0.90719 1.21838 0.97660 0.94371 1.01617 1.21559 1.02470 0.95023 0.96230 1.20636 1.01392 0.96215 0.93234 1.20123 0.97195 0.93765 0.95167 1.21507 0.97996 1.00466 0.92621 1.21282 0.99047 0.90831 1.01730 1.21093 1.02808 0.92658 0.92221 1.98372 1.80181 1.60146 1.67325 1.21510 0.98784 1.01292 0.92768 1.20051 0.99427 0.93995 0.95970 0.92012 0.87003 0.87802 0.74551 0.89555 0.89140 0.92107 0.87878 0.88258 0.88119 0.81354 0.83243 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.80 13.22 21.65 0.29 -56.52 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.70 9.50 67.95 0.65 -31.06 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 10 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 11 C 0.53 19.91 6.36 87.66 0.56 20.47 16 12 O -0.56 -25.73 13.70 -3.02 -0.04 -25.77 16 13 N -0.71 -18.11 4.83 -446.63 -2.16 -20.26 16 14 C 0.19 4.24 2.59 44.13 0.11 4.35 16 15 H 0.07 2.12 7.54 -2.39 -0.02 2.10 16 16 C -0.12 -1.47 5.43 30.61 0.17 -1.30 16 17 C -0.11 -1.05 5.98 30.62 0.18 -0.87 16 18 C -0.08 -0.69 5.67 29.74 0.17 -0.52 16 19 C -0.06 -1.06 5.74 -19.86 -0.11 -1.18 16 20 C -0.11 -1.72 9.60 22.36 0.21 -1.50 16 21 C -0.11 -2.33 9.84 22.23 0.22 -2.11 16 22 C -0.06 -1.79 6.31 22.26 0.14 -1.65 16 23 Cl -0.09 -2.83 28.96 -2.72 -0.08 -2.91 16 24 C -0.12 -4.00 8.81 22.38 0.20 -3.81 16 25 C -0.09 -2.28 5.55 -19.86 -0.11 -2.39 16 26 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 28 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 29 H 0.42 7.71 8.60 -92.71 -0.80 6.92 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 0.87 8.10 -2.38 -0.02 0.85 16 32 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.54 8.12 -2.38 -0.02 0.52 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.17 1.34 8.05 -2.91 -0.02 1.32 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.11 4.44 4.49 -2.92 -0.01 4.43 16 Total: -1.00 -79.92 343.09 2.46 -77.46 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.30 Total: 16.34 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.29 Total: -25.19 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.87 Total: -76.78 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.08 Total: -2.91 kcal Total: -79.92 2.46 -77.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600803173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.872 kcal (2) G-P(sol) polarization free energy of solvation -79.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds