Wall clock time and date at job start Tue Mar 31 2020 14:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48508 * 109.47222 * 270.00385 * 3 2 1 5 5 H 1.48502 * 109.47131 * 29.99970 * 3 2 1 6 6 H 1.48501 * 109.47086 * 150.00385 * 3 2 1 7 7 C 1.37879 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99688 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99858 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.49604 * 59.93100 * 9 7 2 11 11 C 1.53041 * 109.49593 * 179.97438 * 9 7 2 12 12 C 1.53034 * 109.54046 * 181.31842 * 11 9 7 13 13 C 1.53196 * 109.30764 * 298.63319 * 12 11 9 14 14 N 1.46930 * 108.77860 * 54.63657 * 13 12 11 15 15 C 1.34772 * 120.63441 * 126.36529 * 14 13 12 16 16 O 1.21791 * 120.00166 * 175.14400 * 15 14 13 17 17 C 1.41386 * 119.99670 * 355.41994 * 15 14 13 18 18 C 1.35749 * 119.99600 * 200.49046 * 17 15 14 19 19 C 1.41450 * 120.00361 * 27.99036 * 18 17 15 20 20 C 1.37086 * 125.46737 * 188.63245 * 19 18 17 21 21 C 1.37363 * 113.24011 * 179.86481 * 20 19 18 22 22 C 1.34056 * 115.10047 * 0.43203 * 21 20 19 23 23 Cl 1.73604 * 124.50389 * 179.76456 * 22 21 20 24 24 S 1.70604 * 110.99933 * 359.76053 * 22 21 20 25 25 C 1.46922 * 118.73372 * 306.64403 * 14 13 12 26 26 H 0.96994 * 120.00426 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.45973 * 61.29357 * 11 9 7 28 28 H 1.09002 * 109.45901 * 301.33411 * 11 9 7 29 29 H 1.08996 * 109.50216 * 178.68709 * 12 11 9 30 30 H 1.09000 * 109.49824 * 58.58045 * 12 11 9 31 31 H 1.08998 * 109.59052 * 294.84786 * 13 12 11 32 32 H 1.09002 * 109.69991 * 174.48998 * 13 12 11 33 33 H 1.08000 * 120.00521 * 20.48943 * 17 15 14 34 34 H 1.08001 * 119.99555 * 207.99236 * 18 17 15 35 35 H 1.08007 * 123.37740 * 0.02666 * 20 19 18 36 36 H 1.08000 * 122.44647 * 180.21632 * 21 20 19 37 37 H 1.08998 * 109.58553 * 173.14447 * 25 14 13 38 38 H 1.09006 * 109.58946 * 293.56562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8757 -0.6793 0.8881 11 6 4.0224 -2.6366 -0.0010 12 6 5.5524 -2.6378 0.0316 13 6 6.0863 -1.9359 -1.2211 14 7 5.4856 -0.5977 -1.3058 15 6 6.2620 0.4971 -1.4279 16 8 5.7512 1.5914 -1.5860 17 6 7.6697 0.3745 -1.3784 18 6 8.4352 1.4562 -1.0841 19 6 7.9117 2.4955 -0.2800 20 6 8.5152 3.7049 -0.0510 21 6 7.7830 4.5296 0.7679 22 6 6.6247 4.0150 1.2044 23 17 5.5147 4.8411 2.2530 24 16 6.3861 2.4405 0.5925 25 6 4.0226 -0.4753 -1.2485 26 1 -0.4850 0.8400 -0.0004 27 1 3.6780 -3.1439 -0.9022 28 1 3.6402 -3.1571 0.8771 29 1 5.9151 -3.6654 0.0552 30 1 5.8978 -2.1090 0.9200 31 1 5.8182 -2.5134 -2.1058 32 1 7.1708 -1.8463 -1.1580 33 1 8.1359 -0.5797 -1.5747 34 1 9.4440 1.5233 -1.4639 35 1 9.4693 3.9825 -0.4743 36 1 8.1179 5.5189 1.0429 37 1 3.7457 0.5778 -1.2010 38 1 3.5827 -0.9313 -2.1355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701288968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:01 Heat of formation + Delta-G solvation = 30.074681 kcal Electronic energy + Delta-G solvation = -23553.175629 eV Core-core repulsion = 20128.443788 eV Total energy + Delta-G solvation = -3424.731841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16356 -38.13463 -37.27093 -36.50669 -33.85389 -33.36213 -31.99278 -30.62336 -28.68656 -25.68171 -25.24588 -24.13136 -22.12196 -22.04322 -19.95682 -19.50815 -18.54724 -17.45912 -16.90436 -16.66546 -15.94795 -15.27827 -14.74785 -14.55543 -13.98498 -13.96537 -13.78873 -13.58508 -13.27167 -13.20936 -12.89152 -12.75643 -12.49125 -12.23391 -12.14394 -11.75547 -11.27869 -11.16215 -11.05677 -10.72156 -10.51540 -10.29700 -10.13278 -9.86426 -9.77081 -9.68522 -9.21260 -9.10871 -8.67582 -8.51377 -7.84269 -7.74296 -6.12099 -4.13879 0.00504 1.30900 1.75377 2.03401 2.30628 2.71535 3.36278 3.40856 3.45467 3.51622 3.53550 4.40278 4.77301 4.86592 5.08593 5.18975 5.20055 5.25743 5.30496 5.41932 5.47541 5.72574 5.78558 5.89456 5.94743 6.01775 6.06984 6.16147 6.23539 6.36623 6.38201 6.51495 6.63030 6.72533 6.83407 7.12440 7.40517 7.69318 7.80868 8.40683 8.49980 8.91030 9.49185 10.99700 Molecular weight = 325.06amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.006401 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.164450 B = 4373.105919 C = 6125.747615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.871 3.129 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.106 3.894 14 N -0.597 5.597 15 C 0.526 3.474 16 O -0.534 6.534 17 C -0.247 4.247 18 C 0.023 3.977 19 C -0.220 4.220 20 C -0.094 4.094 21 C -0.150 4.150 22 C -0.206 4.206 23 Cl -0.024 7.024 24 S 0.354 5.646 25 C 0.100 3.900 26 H 0.265 0.735 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.132 1.981 0.083 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.181 1.181 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.014 4.014 10 H 0.049 0.951 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.017 4.017 14 N -0.327 5.327 15 C 0.317 3.683 16 O -0.417 6.417 17 C -0.271 4.271 18 C 0.002 3.998 19 C -0.339 4.339 20 C -0.126 4.126 21 C -0.183 4.183 22 C -0.353 4.353 23 Cl 0.005 6.995 24 S 0.626 5.374 25 C -0.021 4.021 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.361 1.654 0.303 18.438 hybrid contribution 1.347 2.204 -0.221 2.592 sum 19.707 3.857 0.082 20.082 Atomic orbital electron populations 1.69879 1.06274 1.27132 1.49974 1.25034 0.94727 0.99014 0.94087 0.87118 0.80001 0.83636 0.79174 1.19755 1.22280 1.18085 1.20943 0.88170 0.94591 1.51672 0.90459 1.19409 0.96850 0.92236 0.92938 0.95107 1.21447 0.92002 0.98850 1.01596 1.21992 0.98585 0.99568 0.97337 1.21796 0.97467 0.83394 0.99002 1.48487 1.08613 1.06022 1.69601 1.17271 0.87665 0.84598 0.78777 1.90848 1.75858 1.25729 1.49300 1.22235 0.94260 0.99713 1.10871 1.20532 0.99486 0.89312 0.90481 1.22832 1.01584 1.00583 1.08919 1.20596 1.00922 0.91823 0.99277 1.19816 0.93940 1.02409 1.02118 1.25824 0.98255 1.05514 1.05672 1.98359 1.60277 1.77424 1.63459 1.84725 1.14301 1.06329 1.32059 1.22554 0.75739 1.02606 1.01187 0.92507 0.92496 0.92158 0.91560 0.91921 0.91408 0.90365 0.83945 0.83916 0.83468 0.84173 0.90180 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 3 Si 0.87 22.77 24.32 -169.99 -4.13 18.64 16 4 H -0.27 -7.25 6.92 56.52 0.39 -6.85 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 7 C -0.52 -14.05 9.15 -34.44 -0.31 -14.37 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.01 0.12 1.83 -91.87 -0.17 -0.05 16 10 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 11 C -0.10 -1.83 5.11 -26.69 -0.14 -1.96 16 12 C -0.14 -1.89 6.08 -26.61 -0.16 -2.05 16 13 C 0.11 1.40 6.33 -3.71 -0.02 1.38 16 14 N -0.60 -10.56 2.98 -176.52 -0.53 -11.09 16 15 C 0.53 9.27 5.91 -15.06 -0.09 9.19 16 16 O -0.53 -11.33 12.26 5.11 0.06 -11.27 16 17 C -0.25 -3.20 8.90 -39.28 -0.35 -3.55 16 18 C 0.02 0.27 9.73 -39.25 -0.38 -0.11 16 19 C -0.22 -3.11 5.55 -38.78 -0.22 -3.33 16 20 C -0.09 -1.14 10.25 -40.32 -0.41 -1.56 16 21 C -0.15 -1.99 10.08 -41.37 -0.42 -2.40 16 22 C -0.21 -3.27 6.82 29.26 0.20 -3.07 16 23 Cl -0.02 -0.37 29.27 -51.86 -1.52 -1.88 16 24 S 0.35 6.22 18.26 -107.50 -1.96 4.25 16 25 C 0.10 2.17 5.08 -3.94 -0.02 2.15 16 26 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.78 5.41 -51.93 -0.28 0.50 16 33 H 0.14 1.34 6.07 -52.49 -0.32 1.02 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.08 1.96 2.35 -51.93 -0.12 1.84 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -32.48 328.19 -9.44 -41.93 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.50 Total: -1.27 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.59 Total: -17.68 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.25 Total: -37.66 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.06 Total: -11.27 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.13 Total: 18.64 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -1.96 Total: 4.25 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.48 -9.44 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701288968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds