Wall clock time and date at job start Tue Mar 31 2020 13:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99883 * 2 1 4 4 H 1.08000 * 119.99655 * 202.03800 * 3 2 1 5 5 C 1.38808 * 120.00057 * 22.03864 * 3 2 1 6 6 N 1.31622 * 120.00332 * 11.27519 * 5 3 2 7 7 Si 1.86799 * 120.00062 * 191.27900 * 5 3 2 8 8 H 1.48504 * 109.46873 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47384 * 119.99760 * 7 5 3 10 10 H 1.48502 * 109.47080 * 240.00149 * 7 5 3 11 11 C 1.46500 * 120.00042 * 179.97438 * 2 1 3 12 12 N 1.46497 * 109.47088 * 270.00366 * 11 2 1 13 13 N 1.40028 * 126.26017 * 269.97225 * 12 11 2 14 14 N 1.23647 * 109.31807 * 180.02562 * 13 12 11 15 15 N 1.40028 * 109.31708 * 359.75115 * 14 13 12 16 16 C 1.40115 * 126.25587 * 180.27517 * 15 14 13 17 17 C 1.38871 * 120.05323 * 144.89645 * 16 15 14 18 18 C 1.38103 * 119.94258 * 179.81382 * 17 16 15 19 19 C 1.38390 * 120.05732 * 0.43455 * 18 17 16 20 20 Cl 1.73591 * 119.94426 * 179.77133 * 19 18 17 21 21 C 1.38398 * 120.11174 * 359.79406 * 19 18 17 22 22 C 1.38100 * 120.05547 * 0.02562 * 21 19 18 23 23 C 1.35050 * 126.26286 * 90.00166 * 12 11 2 24 24 S 1.71205 * 126.79563 * 359.97438 * 23 12 11 25 25 H 1.09001 * 109.47382 * 274.64575 * 1 2 3 26 26 H 1.09000 * 109.46920 * 34.64586 * 1 2 3 27 27 H 1.09001 * 109.47058 * 154.64332 * 1 2 3 28 28 H 0.96991 * 120.00314 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.47229 * 150.00622 * 11 2 1 30 30 H 1.09001 * 109.47249 * 30.00328 * 11 2 1 31 31 H 1.08005 * 120.02823 * 0.02562 * 17 16 15 32 32 H 1.07998 * 119.96803 * 180.20893 * 18 17 16 33 33 H 1.07994 * 119.96953 * 179.97438 * 21 19 18 34 34 H 1.08004 * 120.02761 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1705 1.2201 -0.3510 5 6 1.5317 2.3441 0.4511 6 7 0.3784 2.2721 1.0813 7 14 2.3368 4.0050 0.1636 8 1 3.6186 3.8149 -0.5617 9 1 1.4318 4.8605 -0.6454 10 1 2.6004 4.6601 1.4701 11 6 2.1975 -1.2687 0.0006 12 7 2.4416 -1.6910 1.3820 13 7 3.5577 -1.3657 2.1625 14 7 3.4429 -1.8871 3.2778 15 7 2.2381 -2.5985 3.3347 16 6 1.7522 -3.3186 4.4340 17 6 0.3881 -3.3584 4.6915 18 6 -0.0886 -4.0721 5.7734 19 6 0.7924 -4.7399 6.6059 20 17 0.1904 -5.6313 7.9684 21 6 2.1527 -4.6980 6.3542 22 6 2.6342 -3.9888 5.2715 23 6 1.6317 -2.4658 2.1353 24 16 0.1300 -3.1404 1.6654 25 1 -0.3634 0.0832 1.0243 26 1 -0.3633 0.8454 -0.5842 27 1 -0.3633 -0.9287 -0.4401 28 1 -0.0536 3.0815 1.3961 29 1 3.1500 -1.1386 -0.5132 30 1 1.6085 -2.0286 -0.5130 31 1 -0.2996 -2.8344 4.0442 32 1 -1.1496 -4.1061 5.9721 33 1 2.8382 -5.2197 7.0055 34 1 3.6957 -3.9567 5.0752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725772648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:32 Heat of formation + Delta-G solvation = 168.615588 kcal Electronic energy + Delta-G solvation = -22426.308246 eV Core-core repulsion = 18936.336398 eV Total energy + Delta-G solvation = -3489.971848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 325.046 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.15764 -40.55971 -38.22360 -37.65307 -36.03106 -35.47727 -33.21627 -32.33357 -31.01416 -28.55425 -28.06294 -25.94052 -25.49384 -23.91348 -23.61834 -22.73673 -20.14225 -19.19256 -18.43827 -18.19354 -18.04747 -17.62468 -16.75057 -16.41860 -15.69003 -15.65777 -15.44018 -14.87521 -14.73027 -14.62979 -14.38161 -14.08739 -13.55530 -13.42505 -13.34042 -13.16262 -12.80704 -12.78117 -12.69458 -12.64479 -12.44209 -12.24754 -12.05708 -11.91960 -11.79812 -10.95620 -10.26186 -9.82360 -9.44764 -8.96612 -8.78873 -8.15363 -5.67202 -0.71084 -0.36477 -0.00722 0.12793 0.25974 0.96168 1.06002 1.32985 1.44147 1.48492 1.54709 2.31020 2.31992 2.85952 3.10867 3.27533 3.37455 3.69224 3.73456 3.94945 4.20850 4.24009 4.35856 4.43171 4.60977 4.78640 4.85283 4.93218 5.03772 5.15012 5.16923 5.24358 5.46242 5.55718 5.58256 5.94983 6.37799 6.75637 7.37197 7.78727 8.83717 Molecular weight = 325.05amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.003286 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.672430 B = 8518.563933 C = 8630.844900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.545 5.545 3 C -0.288 4.288 4 H 0.097 0.903 5 C -0.031 4.031 6 N -0.913 5.913 7 Si 0.981 3.019 8 H -0.255 1.255 9 H -0.284 1.284 10 H -0.294 1.294 11 C 0.329 3.671 12 N -0.380 5.380 13 N 0.013 4.987 14 N -0.001 5.001 15 N -0.363 5.363 16 C 0.116 3.884 17 C -0.090 4.090 18 C -0.091 4.091 19 C -0.025 4.025 20 Cl -0.051 7.051 21 C -0.088 4.088 22 C -0.087 4.087 23 C 0.448 3.552 24 S -0.589 6.589 25 H 0.007 0.993 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.259 0.741 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -12.982 9.198 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.259 5.259 3 C -0.418 4.418 4 H 0.114 0.886 5 C -0.231 4.231 6 N -0.555 5.555 7 Si 0.807 3.193 8 H -0.179 1.179 9 H -0.210 1.210 10 H -0.221 1.221 11 C 0.123 3.877 12 N -0.192 5.192 13 N 0.019 4.981 14 N 0.006 4.994 15 N -0.159 5.159 16 C 0.025 3.975 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.053 4.053 20 Cl -0.022 7.022 21 C -0.107 4.107 22 C -0.108 4.108 23 C 0.085 3.915 24 S -0.462 6.462 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.512 -12.663 9.167 16.271 hybrid contribution -0.021 1.295 0.142 1.303 sum 4.491 -11.368 9.309 15.364 Atomic orbital electron populations 1.20859 0.80737 0.97504 0.98430 1.45422 1.03848 1.02197 1.74393 1.19915 0.99375 0.84975 1.37577 0.88554 1.26111 0.97539 1.03008 0.96450 1.70280 1.18185 1.28926 1.38083 0.85015 0.78686 0.78357 0.77248 1.17860 1.20981 1.22053 1.23310 0.99383 0.87704 0.77272 1.56456 1.11092 1.36255 1.15406 1.79705 1.09316 1.11637 0.97469 1.79826 1.00892 1.04513 1.14163 1.48224 1.15197 1.41390 1.11104 1.17834 0.94049 0.97812 0.87793 1.21413 0.93491 0.99218 0.97138 1.21070 1.01453 0.96022 0.92495 1.21170 0.94209 0.98120 0.91822 1.98388 1.88142 1.73453 1.42179 1.21167 0.93797 0.98677 0.97054 1.21086 1.00422 0.95200 0.94100 1.25211 0.94721 0.87730 0.83862 1.93068 1.05969 1.63169 1.83976 0.97454 0.94544 0.93731 0.93175 0.85823 0.86095 0.84424 0.82171 0.80621 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.02 9.01 127.77 1.15 9.17 16 2 N -0.54 -24.77 3.17 -738.77 -2.34 -27.11 16 3 C -0.29 -13.99 9.68 84.03 0.81 -13.17 16 4 H 0.10 4.40 7.84 -2.91 -0.02 4.38 16 5 C -0.03 -1.59 5.13 84.86 0.44 -1.16 16 6 N -0.91 -50.29 10.56 21.65 0.23 -50.06 16 7 Si 0.98 41.03 29.57 68.60 2.03 43.05 16 8 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 C 0.33 12.20 6.82 170.96 1.17 13.36 16 12 N -0.38 -14.71 3.86 -359.84 -1.39 -16.10 16 13 N 0.01 0.48 13.55 37.02 0.50 0.98 16 14 N 0.00 -0.05 13.31 37.02 0.49 0.44 16 15 N -0.36 -12.77 3.73 -189.43 -0.71 -13.48 16 16 C 0.12 3.44 6.35 38.12 0.24 3.68 16 17 C -0.09 -2.62 8.77 22.39 0.20 -2.43 16 18 C -0.09 -2.03 9.82 22.27 0.22 -1.81 16 19 C -0.03 -0.49 6.32 22.34 0.14 -0.35 16 20 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 21 C -0.09 -1.51 9.82 22.28 0.22 -1.30 16 22 C -0.09 -1.91 9.77 22.39 0.22 -1.69 16 23 C 0.45 17.54 7.82 178.88 1.40 18.94 16 24 S -0.59 -24.20 27.49 -56.49 -1.55 -25.75 16 25 H 0.01 0.38 7.40 -2.39 -0.02 0.36 16 26 H 0.04 1.82 7.19 -2.39 -0.02 1.81 16 27 H 0.04 1.91 7.84 -2.39 -0.02 1.89 16 28 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.12 3.94 8.03 -2.39 -0.02 3.92 16 30 H 0.12 4.15 7.44 -2.39 -0.02 4.14 16 31 H 0.14 4.77 6.09 -2.91 -0.02 4.75 16 32 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -60.45 329.15 4.53 -55.92 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.15 Total: 9.76 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.20 Total: 23.25 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.21 Total: -105.33 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -24.20 SS G_CDS: -1.55 Total: -25.75 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -60.45 4.53 -55.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.534 kcal (2) G-P(sol) polarization free energy of solvation -60.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds