Wall clock time and date at job start Tue Mar 31 2020 14:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.97326 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40516 * 23.51588 * 5 4 3 7 7 O 1.42098 * 106.40181 * 156.44005 * 5 4 3 8 8 N 1.65604 * 107.21801 * 269.97819 * 5 4 3 9 9 C 1.40574 * 120.00007 * 65.00035 * 8 5 4 10 10 C 1.40657 * 126.07443 * 314.68814 * 9 8 5 11 11 N 1.30929 * 108.40116 * 179.88010 * 10 9 8 12 12 N 1.40075 * 108.39799 * 0.38023 * 11 10 9 13 13 C 1.37310 * 126.07593 * 179.71973 * 12 11 10 14 14 H 1.08003 * 120.00095 * 180.02562 * 13 12 11 15 15 C 1.38986 * 120.00339 * 0.04479 * 13 12 11 16 16 N 1.31305 * 119.99429 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00258 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46834 * 90.00041 * 17 15 13 19 19 H 1.48498 * 109.46754 * 209.99999 * 17 15 13 20 20 H 1.48498 * 109.46808 * 330.00088 * 17 15 13 21 21 C 1.35634 * 126.07089 * 135.00238 * 9 8 5 22 22 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 23 23 C 1.38168 * 120.03012 * 0.02562 * 22 4 3 24 24 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 25 25 F 1.35102 * 120.02757 * 0.24616 * 24 2 1 26 26 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 27 27 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 28 28 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 29 29 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 30 30 H 0.96998 * 119.99461 * 245.00347 * 8 5 4 31 31 H 1.08002 * 125.79513 * 0.04016 * 10 9 8 32 32 H 0.97000 * 119.99286 * 179.97438 * 16 15 13 33 33 H 1.08003 * 126.25218 * 359.92445 * 21 9 8 34 34 H 1.08002 * 119.98387 * 179.97438 * 22 4 3 35 35 H 1.08001 * 120.02005 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 16 4.4606 2.7236 0.0001 6 8 3.5784 3.6952 0.5450 7 8 5.7438 2.4468 0.5443 8 7 4.7054 3.1491 -1.5815 9 6 3.6079 3.4550 -2.4049 10 6 2.4110 2.7219 -2.4960 11 7 1.6284 3.3141 -3.3626 12 7 2.2954 4.4394 -3.8638 13 6 1.8077 5.3184 -4.7991 14 1 2.4091 6.1573 -5.1171 15 6 0.5400 5.1290 -5.3364 16 7 -0.1911 4.1091 -4.9499 17 14 -0.1237 6.3253 -6.6084 18 1 0.2507 5.8602 -7.9681 19 1 -1.6030 6.3941 -6.4986 20 1 0.4536 7.6725 -6.3694 21 6 3.5175 4.5063 -3.2572 22 6 4.2732 0.0004 -0.0005 23 6 3.5842 -1.1973 -0.0005 24 6 2.1994 -1.1988 -0.0005 25 9 1.5247 -2.3693 -0.0061 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3633 0.8905 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 1.6585 2.1322 0.0004 30 1 5.6060 3.1871 -1.9396 31 1 2.1762 1.8244 -1.9429 32 1 -1.0760 3.9771 -5.3247 33 1 4.2734 5.2591 -3.4251 34 1 5.3532 0.0018 -0.0014 35 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729835590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:30 Heat of formation + Delta-G solvation = -9.199394 kcal Electronic energy + Delta-G solvation = -25178.355015 eV Core-core repulsion = 21220.043404 eV Total energy + Delta-G solvation = -3958.311611 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.15450 -39.70844 -39.17738 -36.94537 -35.57225 -34.61157 -33.10750 -33.02122 -31.09732 -30.28042 -27.49188 -27.15767 -24.90544 -23.33657 -22.29096 -20.81010 -20.11446 -19.08860 -17.92109 -17.81564 -17.15455 -16.92194 -16.69850 -15.91306 -15.69527 -15.45325 -14.62302 -14.52776 -14.04365 -13.66576 -13.56817 -13.51203 -13.40509 -13.23603 -13.04286 -12.34637 -12.18386 -12.08192 -11.93333 -11.76055 -11.75701 -11.63408 -11.27509 -11.20150 -10.99422 -10.84425 -10.58800 -10.20811 -9.43589 -9.16439 -8.94628 -8.90627 -8.26926 -7.09479 -6.66659 -4.37510 0.48420 0.78767 1.06342 2.89596 3.00146 3.05380 3.07738 3.36211 3.48899 3.77119 3.90637 4.00559 4.08747 4.37486 4.59585 4.61691 4.73769 4.92286 5.05074 5.18902 5.32261 5.58101 5.60334 5.72681 5.90393 5.91536 5.97463 6.06608 6.10707 6.23476 6.28819 6.67261 6.69668 7.03161 7.17710 7.48034 7.73190 8.04570 8.54637 9.22384 9.45263 10.29422 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.004379 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.712101 B = 6393.152742 C = 7851.094697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.016 3.984 4 C -0.680 4.680 5 S 2.701 3.299 6 O -0.947 6.947 7 O -0.971 6.971 8 N -1.017 6.017 9 C -0.051 4.051 10 C -0.072 4.072 11 N -0.245 5.245 12 N -0.139 5.139 13 C -0.322 4.322 14 H 0.119 0.881 15 C 0.047 3.953 16 N -0.771 5.771 17 Si 0.936 3.064 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.263 1.263 21 C -0.056 4.056 22 C 0.003 3.997 23 C -0.176 4.176 24 C 0.148 3.852 25 F -0.132 7.132 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.411 0.589 31 H 0.156 0.844 32 H 0.276 0.724 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -7.273 6.466 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.140 4.140 3 C -0.003 4.003 4 C -0.766 4.766 5 S 2.790 3.210 6 O -0.937 6.937 7 O -0.962 6.962 8 N -0.771 5.771 9 C -0.159 4.159 10 C -0.249 4.249 11 N -0.075 5.075 12 N 0.093 4.907 13 C -0.454 4.454 14 H 0.137 0.863 15 C -0.170 4.170 16 N -0.397 5.397 17 Si 0.759 3.241 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.187 1.187 21 C -0.208 4.208 22 C -0.016 4.016 23 C -0.195 4.195 24 C 0.129 3.871 25 F -0.110 7.110 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.174 0.826 30 H 0.247 0.753 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.394 -7.018 6.668 10.258 hybrid contribution 0.493 -0.461 -0.703 0.975 sum 3.887 -7.479 5.965 10.326 Atomic orbital electron populations 1.20793 0.89248 1.04409 1.02979 1.20071 0.97764 0.91653 1.04491 1.20867 0.92017 0.98736 0.88697 1.31119 1.06342 1.20883 1.18247 1.01742 0.73140 0.73751 0.72412 1.93589 1.67063 1.56759 1.76302 1.93553 1.39837 1.86036 1.76729 1.52105 1.12935 1.83675 1.28423 1.16683 0.90988 1.00965 1.07227 1.23900 0.94537 1.02040 1.04413 1.78207 1.18205 0.98048 1.13084 1.44596 1.07428 1.15714 1.22953 1.19951 1.01454 1.06567 1.17452 0.86306 1.25645 0.95970 0.97191 0.98185 1.70192 1.09395 1.24402 1.35731 0.85801 0.78537 0.79961 0.79751 1.19559 1.20036 1.18686 1.21648 0.92232 1.02302 1.04644 1.20717 1.00370 0.90045 0.90467 1.21174 0.92186 0.99975 1.06192 1.17802 0.90195 0.80908 0.98234 1.91504 1.80464 1.45882 1.93182 0.90633 0.89706 0.90974 0.82561 0.75347 0.82685 0.91359 0.83166 0.83375 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.84 36.00 0.35 -1.09 16 2 C -0.14 -1.94 5.89 -104.56 -0.62 -2.56 16 3 C 0.02 0.25 6.00 -39.59 -0.24 0.01 16 4 C -0.68 -10.22 5.23 -39.58 -0.21 -10.43 16 5 S 2.70 44.44 5.61 -107.50 -0.60 43.83 16 6 O -0.95 -18.78 17.00 -57.17 -0.97 -19.76 16 7 O -0.97 -16.24 17.28 -57.17 -0.99 -17.22 16 8 N -1.02 -17.01 5.93 32.32 0.19 -16.82 16 9 C -0.05 -1.07 6.41 -83.86 -0.54 -1.61 16 10 C -0.07 -1.65 10.71 -17.02 -0.18 -1.84 16 11 N -0.24 -6.49 10.40 30.81 0.32 -6.17 16 12 N -0.14 -3.60 3.74 -11.40 -0.04 -3.65 16 13 C -0.32 -8.10 10.25 -14.82 -0.15 -8.25 16 14 H 0.12 2.68 7.83 -52.48 -0.41 2.27 16 15 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 16 N -0.77 -20.29 11.81 55.50 0.66 -19.63 16 17 Si 0.94 18.12 29.55 -169.99 -5.02 13.10 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.06 -1.27 11.50 -16.36 -0.19 -1.45 16 22 C 0.00 0.04 9.52 -39.60 -0.38 -0.34 16 23 C -0.18 -2.10 10.03 -39.52 -0.40 -2.50 16 24 C 0.15 1.97 7.24 -39.42 -0.29 1.68 16 25 F -0.13 -1.70 16.48 2.25 0.04 -1.67 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 28 H 0.07 0.83 7.64 -51.93 -0.40 0.43 16 29 H 0.16 2.52 7.17 -52.49 -0.38 2.14 16 30 H 0.41 5.60 8.96 -34.47 -0.31 5.29 16 31 H 0.16 3.12 4.21 -52.49 -0.22 2.90 16 32 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 34 H 0.15 1.55 7.62 -52.49 -0.40 1.15 16 35 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -32.32 321.31 -7.44 -39.76 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -2.94 Total: 10.68 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.92 Total: -27.30 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 1.13 Total: -46.27 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.96 Total: -36.98 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 16 Polarization: 44.44 SS G_CDS: -0.60 Total: 43.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.32 -7.44 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729835590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.558 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds