Wall clock time and date at job start Tue Mar 31 2020 14:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.97326 * 180.02562 * 4 3 2 6 6 O 1.42097 * 106.40516 * 23.51588 * 5 4 3 7 7 O 1.42098 * 106.40181 * 156.44005 * 5 4 3 8 8 N 1.65604 * 107.21801 * 269.97819 * 5 4 3 9 9 C 1.40574 * 120.00007 * 65.00035 * 8 5 4 10 10 C 1.40657 * 126.07443 * 314.68814 * 9 8 5 11 11 N 1.30929 * 108.40116 * 179.88010 * 10 9 8 12 12 N 1.40075 * 108.39799 * 0.38023 * 11 10 9 13 13 C 1.37310 * 126.07593 * 179.71973 * 12 11 10 14 14 H 1.08003 * 120.00095 * 180.02562 * 13 12 11 15 15 C 1.38986 * 120.00339 * 0.04479 * 13 12 11 16 16 N 1.31305 * 119.99429 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00258 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46834 * 90.00041 * 17 15 13 19 19 H 1.48498 * 109.46754 * 209.99999 * 17 15 13 20 20 H 1.48498 * 109.46808 * 330.00088 * 17 15 13 21 21 C 1.35634 * 126.07089 * 135.00238 * 9 8 5 22 22 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 23 23 C 1.38168 * 120.03012 * 0.02562 * 22 4 3 24 24 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 25 25 F 1.35102 * 120.02757 * 0.24616 * 24 2 1 26 26 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 27 27 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 28 28 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 29 29 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 30 30 H 0.96998 * 119.99461 * 245.00347 * 8 5 4 31 31 H 1.08002 * 125.79513 * 0.04016 * 10 9 8 32 32 H 0.97000 * 119.99286 * 179.97438 * 16 15 13 33 33 H 1.08003 * 126.25218 * 359.92445 * 21 9 8 34 34 H 1.08002 * 119.98387 * 179.97438 * 22 4 3 35 35 H 1.08001 * 120.02005 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 16 4.4606 2.7236 0.0001 6 8 3.5784 3.6952 0.5450 7 8 5.7438 2.4468 0.5443 8 7 4.7054 3.1491 -1.5815 9 6 3.6079 3.4550 -2.4049 10 6 2.4110 2.7219 -2.4960 11 7 1.6284 3.3141 -3.3626 12 7 2.2954 4.4394 -3.8638 13 6 1.8077 5.3184 -4.7991 14 1 2.4091 6.1573 -5.1171 15 6 0.5400 5.1290 -5.3364 16 7 -0.1911 4.1091 -4.9499 17 14 -0.1237 6.3253 -6.6084 18 1 0.2507 5.8602 -7.9681 19 1 -1.6030 6.3941 -6.4986 20 1 0.4536 7.6725 -6.3694 21 6 3.5175 4.5063 -3.2572 22 6 4.2732 0.0004 -0.0005 23 6 3.5842 -1.1973 -0.0005 24 6 2.1994 -1.1988 -0.0005 25 9 1.5247 -2.3693 -0.0061 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3633 0.8905 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 1.6585 2.1322 0.0004 30 1 5.6060 3.1871 -1.9396 31 1 2.1762 1.8244 -1.9429 32 1 -1.0760 3.9771 -5.3247 33 1 4.2734 5.2591 -3.4251 34 1 5.3532 0.0018 -0.0014 35 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729835590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:30 Heat of formation + Delta-G solvation = -31.468144 kcal Electronic energy + Delta-G solvation = -25179.320661 eV Core-core repulsion = 21220.043404 eV Total energy + Delta-G solvation = -3959.277256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.068 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.18196 -41.47001 -40.28457 -38.34895 -36.99896 -36.23949 -34.81519 -34.06585 -32.41705 -31.89480 -29.24504 -28.19058 -26.70648 -24.44359 -23.44398 -22.51792 -21.77080 -20.57082 -19.45927 -18.94251 -18.53938 -18.19090 -17.89285 -17.45332 -17.05383 -16.90403 -16.07109 -15.67491 -15.51061 -15.28272 -15.03049 -14.66252 -14.52585 -14.40613 -14.35173 -13.76648 -13.52616 -13.40483 -13.25547 -13.21808 -13.18903 -13.12478 -12.85664 -12.73673 -12.25313 -12.15754 -12.07553 -11.70017 -11.18221 -10.73946 -10.24251 -10.13143 -9.98508 -8.83972 -8.46786 -6.26247 -0.74045 -0.43568 0.01014 1.30014 1.42530 1.58744 1.74253 1.84100 2.11523 2.15239 2.29579 2.72331 2.84511 2.96270 3.09652 3.22501 3.58170 3.63188 3.98871 4.08092 4.25821 4.31959 4.55454 4.60427 4.63786 4.66430 4.68022 4.87339 4.88018 4.93911 5.03976 5.08609 5.24637 5.43706 5.63740 5.91738 6.10073 6.34505 6.75471 7.42485 7.61848 8.52195 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.004379 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.712101 B = 6393.152742 C = 7851.094697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.146 4.146 3 C -0.006 4.006 4 C -0.687 4.687 5 S 2.718 3.282 6 O -0.986 6.986 7 O -0.970 6.970 8 N -1.010 6.010 9 C -0.038 4.038 10 C -0.078 4.078 11 N -0.292 5.292 12 N -0.167 5.167 13 C -0.355 4.355 14 H 0.138 0.862 15 C 0.000 4.000 16 N -0.820 5.820 17 Si 1.014 2.986 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.249 1.249 21 C -0.064 4.064 22 C 0.004 3.996 23 C -0.163 4.163 24 C 0.144 3.856 25 F -0.128 7.128 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.427 0.573 31 H 0.175 0.825 32 H 0.277 0.723 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -8.052 6.433 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C -0.025 4.025 4 C -0.776 4.776 5 S 2.809 3.191 6 O -0.976 6.976 7 O -0.960 6.960 8 N -0.765 5.765 9 C -0.146 4.146 10 C -0.254 4.254 11 N -0.123 5.123 12 N 0.065 4.935 13 C -0.486 4.486 14 H 0.155 0.845 15 C -0.213 4.213 16 N -0.447 5.447 17 Si 0.834 3.166 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.172 1.172 21 C -0.216 4.216 22 C -0.015 4.015 23 C -0.182 4.182 24 C 0.125 3.875 25 F -0.107 7.107 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.266 0.734 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.198 0.802 34 H 0.193 0.807 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.897 -7.764 6.635 11.326 hybrid contribution 0.157 -0.370 -0.543 0.676 sum 5.054 -8.134 6.092 11.350 Atomic orbital electron populations 1.20837 0.88522 1.04103 1.04077 1.20222 0.98546 0.91690 1.04294 1.20773 0.92428 0.98690 0.90652 1.30831 1.06056 1.20791 1.19900 1.01002 0.72634 0.73671 0.71751 1.93548 1.67994 1.58967 1.77042 1.93549 1.39839 1.86133 1.76504 1.51991 1.12747 1.83703 1.28056 1.16695 0.91423 0.99873 1.06616 1.24323 0.94856 1.02562 1.03708 1.78110 1.20165 0.99295 1.14724 1.44849 1.08478 1.16128 1.24090 1.20586 1.02513 1.07425 1.18059 0.84488 1.26743 0.95831 0.98753 0.99927 1.70343 1.09934 1.26751 1.37710 0.84652 0.77424 0.77871 0.76687 1.18903 1.20146 1.17197 1.22335 0.92001 1.03070 1.04154 1.21093 1.01731 0.89313 0.89383 1.21566 0.91610 1.01152 1.03902 1.17944 0.90917 0.80635 0.98043 1.91516 1.80548 1.45513 1.93100 0.88857 0.90999 0.90234 0.84322 0.73444 0.80792 0.91287 0.80186 0.80659 0.80314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 9.84 71.23 0.70 -2.20 16 2 C -0.15 -4.00 5.89 -19.82 -0.12 -4.12 16 3 C -0.01 -0.19 6.00 22.26 0.13 -0.05 16 4 C -0.69 -19.81 5.23 22.27 0.12 -19.69 16 5 S 2.72 86.69 5.61 -56.49 -0.32 86.37 16 6 O -0.99 -39.35 17.00 -128.00 -2.18 -41.53 16 7 O -0.97 -30.41 17.28 -128.00 -2.21 -32.62 16 8 N -1.01 -32.45 5.93 -51.65 -0.31 -32.76 16 9 C -0.04 -1.59 6.41 37.73 0.24 -1.35 16 10 C -0.08 -3.60 10.71 85.42 0.91 -2.69 16 11 N -0.29 -15.98 10.40 -56.45 -0.59 -16.57 16 12 N -0.17 -8.79 3.74 -189.97 -0.71 -9.50 16 13 C -0.35 -18.10 10.25 84.01 0.86 -17.24 16 14 H 0.14 6.15 7.83 -2.91 -0.02 6.13 16 15 C 0.00 -0.01 5.50 84.95 0.47 0.45 16 16 N -0.82 -44.64 11.81 21.66 0.26 -44.38 16 17 Si 1.01 37.28 29.55 68.60 2.03 39.31 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.28 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 21 C -0.06 -2.86 11.50 83.35 0.96 -1.90 16 22 C 0.00 0.09 9.52 22.26 0.21 0.30 16 23 C -0.16 -3.34 10.03 22.31 0.22 -3.12 16 24 C 0.14 3.52 7.24 22.38 0.16 3.69 16 25 F -0.13 -3.02 16.48 44.97 0.74 -2.28 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 1.92 8.09 -2.38 -0.02 1.90 16 28 H 0.08 1.79 7.64 -2.39 -0.02 1.77 16 29 H 0.14 4.71 7.17 -2.91 -0.02 4.69 16 30 H 0.43 10.77 8.96 -96.75 -0.87 9.91 16 31 H 0.18 7.15 4.21 -2.91 -0.01 7.13 16 32 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.18 6.67 8.06 -2.91 -0.02 6.64 16 34 H 0.18 2.97 7.62 -2.91 -0.02 2.95 16 35 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -71.09 321.31 1.89 -69.20 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.30 Total: 32.68 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 4.87 Total: -47.92 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -1.35 Total: -103.21 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -4.39 Total: -74.15 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.74 Total: -2.28 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 86.69 SS G_CDS: -0.32 Total: 86.37 kcal Total: -71.09 1.89 -69.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729835590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.734 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds