Wall clock time and date at job start Tue Mar 31 2020 15:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31603 * 1 3 3 Si 1.86800 * 119.99751 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99758 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99762 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00007 * 3 2 1 7 7 C 1.38731 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00225 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00148 * 179.97438 * 9 7 2 11 11 N 1.32332 * 119.73604 * 359.72623 * 10 9 7 12 12 C 1.32660 * 121.63657 * 179.74950 * 11 10 9 13 13 C 1.48265 * 119.54667 * 180.24423 * 12 11 10 14 14 C 1.39400 * 120.12883 * 179.97438 * 13 12 11 15 15 C 1.37998 * 119.87181 * 179.74253 * 14 13 12 16 16 C 1.38334 * 120.12965 * 0.51805 * 15 14 13 17 17 C 1.38332 * 120.25083 * 359.76029 * 16 15 14 18 18 C 1.37995 * 120.13113 * 359.97438 * 17 16 15 19 19 C 1.39449 * 120.90498 * 0.52854 * 12 11 10 20 20 C 1.38289 * 119.37828 * 359.74074 * 19 12 11 21 21 C 1.39639 * 118.49531 * 359.97438 * 20 19 12 22 22 C 1.48242 * 120.47205 * 180.02562 * 21 20 19 23 23 N 1.34129 * 126.68947 * 179.66840 * 22 21 20 24 24 N 1.28978 * 107.25877 * 179.83825 * 23 22 21 25 25 N 1.28723 * 108.97242 * 0.42919 * 24 23 22 26 26 H 0.97000 * 125.32881 * 179.75682 * 25 24 23 27 27 N 1.28869 * 109.34023 * 359.72959 * 25 24 23 28 28 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.05888 * 0.02562 * 14 13 12 30 30 H 1.08007 * 119.93580 * 180.27982 * 15 14 13 31 31 H 1.07997 * 119.87077 * 179.74038 * 16 15 14 32 32 H 1.08005 * 119.93389 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.06685 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.30903 * 179.76604 * 19 12 11 35 35 H 1.08000 * 120.75370 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0098 -1.2014 0.0005 8 1 3.0898 -1.2014 0.0001 9 16 1.1288 -2.7274 0.0005 10 6 2.4785 -3.8599 0.0005 11 7 3.7200 -3.4016 -0.0050 12 6 4.7639 -4.2201 -0.0002 13 6 6.1351 -3.6562 -0.0012 14 6 7.2408 -4.5052 0.0042 15 6 8.5147 -3.9746 -0.0021 16 6 8.6958 -2.6032 -0.0031 17 6 7.6023 -1.7559 -0.0027 18 6 6.3237 -2.2750 -0.0019 19 6 4.5893 -5.6037 -0.0003 20 6 3.3088 -6.1258 0.0002 21 6 2.2285 -5.2410 0.0012 22 6 0.8373 -5.7531 0.0022 23 7 -0.2862 -5.0206 0.0094 24 7 -1.2795 -5.8434 0.0042 25 7 -0.8252 -7.0478 0.0032 26 1 -1.3677 -7.8519 0.0029 27 7 0.4631 -7.0180 0.0020 28 1 -0.4850 0.8400 -0.0004 29 1 7.1006 -5.5761 0.0088 30 1 9.3721 -4.6314 -0.0025 31 1 9.6946 -2.1925 -0.0038 32 1 7.7495 -0.6859 -0.0038 33 1 5.4707 -1.6125 -0.0020 34 1 5.4461 -6.2612 -0.0002 35 1 3.1479 -7.1938 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737697619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:13 Heat of formation + Delta-G solvation = 183.020622 kcal Electronic energy + Delta-G solvation = -23361.313687 eV Core-core repulsion = 19874.399337 eV Total energy + Delta-G solvation = -3486.914350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.95001 -39.71130 -38.27479 -34.18002 -33.46040 -32.66846 -32.02104 -31.54720 -30.60877 -28.86406 -25.81211 -24.62740 -24.40267 -23.23238 -22.29034 -21.56207 -20.77566 -18.93899 -18.02235 -17.06063 -16.67935 -16.17277 -15.94322 -15.56628 -14.94088 -14.51127 -14.19241 -13.80269 -13.74449 -13.60555 -13.25710 -12.94705 -12.61473 -12.49781 -12.23324 -11.56925 -11.27217 -11.16135 -11.07170 -10.99093 -10.91579 -10.83232 -10.73897 -10.62646 -10.10644 -9.76178 -9.20973 -9.06541 -8.76083 -8.70064 -8.53069 -7.94956 -6.71352 -6.45150 -4.12615 0.71023 1.48080 1.60103 1.84222 1.90619 2.61515 2.92747 3.06674 3.17787 3.23243 3.31796 3.93135 3.97126 4.20209 4.54153 4.60731 4.67967 4.95404 4.99895 5.10427 5.13079 5.26428 5.49067 5.54607 5.67144 5.74296 5.79614 5.86989 6.00363 6.03977 6.15425 6.23832 6.47443 6.59070 6.67705 6.70103 6.75498 6.88774 7.11376 7.18934 7.58149 8.41148 8.57560 8.64672 9.05794 10.60130 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.008428 B = 0.005859 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.353387 B = 4777.947374 C = 8089.454038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.076 3.924 3 Si 0.923 3.077 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.559 4.559 8 H 0.108 0.892 9 S 0.215 5.785 10 C 0.121 3.879 11 N -0.471 5.471 12 C 0.203 3.797 13 C -0.040 4.040 14 C -0.101 4.101 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.076 4.076 19 C -0.230 4.230 20 C -0.006 4.006 21 C -0.115 4.115 22 C 0.238 3.762 23 N -0.242 5.242 24 N -0.059 5.059 25 N -0.240 5.240 26 H 0.468 0.532 27 N -0.315 5.315 28 H 0.275 0.725 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 -11.896 0.006 14.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.134 4.134 3 Si 0.748 3.252 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.707 4.707 8 H 0.125 0.875 9 S 0.475 5.525 10 C -0.129 4.129 11 N -0.185 5.185 12 C 0.056 3.944 13 C -0.041 4.041 14 C -0.120 4.120 15 C -0.149 4.149 16 C -0.135 4.135 17 C -0.147 4.147 18 C -0.094 4.094 19 C -0.259 4.259 20 C -0.034 4.034 21 C -0.134 4.134 22 C -0.041 4.041 23 N -0.115 5.115 24 N -0.055 5.055 25 N -0.084 5.084 26 H 0.321 0.679 27 N -0.168 5.168 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.537 -10.672 0.009 12.515 hybrid contribution 1.800 -0.333 -0.010 1.830 sum 8.337 -11.005 -0.001 13.806 Atomic orbital electron populations 1.69978 1.06178 1.28482 1.45208 1.25156 0.95024 0.99810 0.93362 0.86076 0.79801 0.80602 0.78681 1.19944 1.20689 1.19009 1.23845 0.98197 0.91801 1.56854 0.87453 1.84506 0.98988 0.94454 1.74555 1.24406 0.97871 0.94968 0.95681 1.68259 0.97274 1.36880 1.16042 1.19887 0.91840 0.89874 0.92819 1.18641 0.90623 0.93470 1.01360 1.21234 0.91786 0.99632 0.99375 1.20981 0.96687 0.95232 1.01997 1.21199 0.98627 0.93700 1.00014 1.21167 0.92531 0.99906 1.01057 1.21557 0.97747 0.94918 0.95220 1.21453 0.97004 0.95124 1.12273 1.21129 0.91098 0.98989 0.92226 1.17518 0.86374 0.92935 1.16551 1.23427 0.95394 0.84714 1.00531 1.76352 0.95032 1.23259 1.16880 1.78964 1.23426 0.88042 1.15030 1.47660 1.03641 1.09879 1.47201 0.67889 1.74847 0.94853 1.22577 1.24499 0.91555 0.85579 0.86137 0.86397 0.85996 0.84171 0.85360 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.42 13.22 55.49 0.73 -23.69 16 2 C 0.08 2.07 5.49 -17.47 -0.10 1.98 16 3 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.56 -15.35 9.25 30.91 0.29 -15.07 16 8 H 0.11 2.92 6.54 -52.49 -0.34 2.58 16 9 S 0.22 5.55 18.69 -107.50 -2.01 3.54 16 10 C 0.12 2.77 6.99 -16.54 -0.12 2.65 16 11 N -0.47 -10.49 7.49 -8.34 -0.06 -10.55 16 12 C 0.20 3.79 6.73 -82.94 -0.56 3.23 16 13 C -0.04 -0.66 5.88 -104.91 -0.62 -1.28 16 14 C -0.10 -1.32 9.41 -39.24 -0.37 -1.69 16 15 C -0.13 -1.50 10.03 -39.63 -0.40 -1.90 16 16 C -0.12 -1.37 10.04 -39.51 -0.40 -1.77 16 17 C -0.13 -1.77 10.03 -39.64 -0.40 -2.17 16 18 C -0.08 -1.26 9.57 -39.24 -0.38 -1.64 16 19 C -0.23 -3.65 9.44 -39.11 -0.37 -4.02 16 20 C -0.01 -0.10 9.81 -39.04 -0.38 -0.48 16 21 C -0.12 -2.29 5.92 -104.47 -0.62 -2.91 16 22 C 0.24 4.55 7.84 -156.25 -1.23 3.33 16 23 N -0.24 -4.98 9.71 32.13 0.31 -4.66 16 24 N -0.06 -1.00 13.47 60.35 0.81 -0.19 16 25 N -0.24 -3.09 7.90 60.35 0.48 -2.61 16 26 H 0.47 3.36 8.96 -340.35 -3.05 0.31 16 27 N -0.31 -4.90 12.15 32.15 0.39 -4.51 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.13 1.35 6.16 -52.48 -0.32 1.02 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.14 2.66 7.53 -52.48 -0.40 2.26 16 34 H 0.13 1.56 6.16 -52.49 -0.32 1.24 16 35 H 0.13 1.79 7.95 -52.49 -0.42 1.37 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -32.36 325.72 -10.35 -42.71 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.26 Total: 0.94 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -5.63 Total: -21.72 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 2.66 Total: -46.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -2.01 Total: 3.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.36 -10.35 -42.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.733 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds